2024-09-29 10:32:28, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001409086 1553 bp mRNA linear PLN 10-JUL-2022 DEFINITION Oryza sativa Japonica Group WUSCHEL-related homeobox 5 (LOC4327390), mRNA. ACCESSION NM_001409086 XM_015788740 VERSION NM_001409086.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AP014957.1, CI256108.1 and CI251669.1. On Jul 8, 2022 this sequence version replaced XM_015788740.2. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: CI256108.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMN07270525 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-802 AP014957.1 36059129-36059930 c 803-873 CI256108.1 1-71 874-1070 CI251669.1 1-197 1071-1553 CI256108.1 269-751 FEATURES Location/Qualifiers source 1..1553 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="1" /map="1" gene 1..1553 /gene="LOC4327390" /gene_synonym="OsWOX5; WOX5" /note="WUSCHEL-related homeobox 5" /db_xref="GeneID:4327390" exon 1..847 /gene="LOC4327390" /gene_synonym="OsWOX5; WOX5" /inference="alignment:Splign:2.1.0" misc_feature 76..78 /gene="LOC4327390" /gene_synonym="OsWOX5; WOX5" /note="upstream in-frame stop codon" CDS 364..1305 /gene="LOC4327390" /gene_synonym="OsWOX5; WOX5" /note="P0408C03.23; putative WOX2 protein; LOC_Os01g62310; Protein WOX2" /codon_start=1 /product="wUSCHEL-related homeobox 5" /protein_id="NP_001396015.1" /db_xref="GeneID:4327390" /translation="
METTTTTLGGGGGGRAGGFSDPPSPLSPPLSPASAAAAALANARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQKQQSFDYFSKLFRRPPPLPVLHRPLARPFPLAMAPTAMPPPPPPPATTTTAACNAGGVMFRTPSFMPVATNNASYYPQQQTPLLYPGMEVCPHDKSTAQPPATTTMYLQAPPSSAHLAAAAGRGAAEAEGHGRRGGGAGGRETLQLFPLQPTFVLPDHKPLRAGSACAAVSPTTPSASASFSWESESSDSPSSEAPPFYDFFGVHSGGR"
misc_feature 364..459 /gene="LOC4327390" /gene_synonym="OsWOX5; WOX5" /note="propagated from UniProtKB/Swiss-Prot (Q8LR86.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 493..657 /gene="LOC4327390" /gene_synonym="OsWOX5; WOX5" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 1033..1104 /gene="LOC4327390" /gene_synonym="OsWOX5; WOX5" /note="propagated from UniProtKB/Swiss-Prot (Q8LR86.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 1174..1302 /gene="LOC4327390" /gene_synonym="OsWOX5; WOX5" /note="propagated from UniProtKB/Swiss-Prot (Q8LR86.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 848..1549 /gene="LOC4327390" /gene_synonym="OsWOX5; WOX5" /inference="alignment:Splign:2.1.0" ORIGIN
tacgcccttgatccatcgattggagtaccgacgacgatgcatgcacgcatggatggatcacgccactcgccgtggtgatctacgcggcgcacggcacaggggcggcacgcgactcctcccgtcctcacgaaaacgtcgaaacgtacgctccccttgaccgcaacgcgacacgatccccacgctagctacgcctccccctgccgcccgcgcgcgcgcacacgcgctacggcccacccatcgcccacctcctcacactcccatgcacgcttaaaaaccacgcacccgcggccgctcgcaggcagcaaacgcatcacaaacgcgagcgggcgagccgagcgagcgcgaccaaagtcagagcaagccatggagacgacgacgacgacgttgggcggcggcggcggcgggcgggcgggaggcttctccgatccgccgtctccgctctcgccgccgctgtcgccggcctcggcggcggcggcggcgctggcgaacgcgcggtggacgccgaccaaggagcagatcgcggtgctggaggggctgtaccggcaggggctgcgcacgccgaccgccgagcagatacagcagatcacggcgaggctccgggagcacggccacattgagggcaagaacgtgttctactggttccagaaccacaaggcccggcagcggcagaagcagaagcagcagagcttcgactacttcagcaagctgttccgccgcccgccgccgctgcccgtgctccacaggccactcgcgcggcccttccctctcgccatggcgccgacggcgatgccaccgccgccgccgccgccggcgacgacgacgacggccgcatgcaacgccggtggtgtgatgttcaggacgccaagcttcatgccggtcgcgacaaataacgccagctactacccgcagcagcagacgccgttgctgtacccagggatggaagtgtgtccgcacgacaagtccacggcgcagccaccggccaccaccaccatgtacctgcaggcaccgccgagcagcgcacacctcgcggcggcggctggccgcggcgcggcggaagcggaaggccatggccgccgcggcggcggcgccggtgggcgcgagaccctccagctgttccccctgcagcccaccttcgtgctgccggatcacaagccgctccgcgccgggagcgcctgcgccgccgtgtccccgacgacgccgtccgcgtccgcgtcgttctcgtgggagtcggagagctcggacagccccagcagcgaggcgcctccgttctacgacttcttcggcgtccattctggaggccgctgagcgtgaaggtgagagtgagtgagcgtagagtggagtggagtggagtggaagttgatatcttcatgagtggacgaacccgtcgtgctttttgaaacttatctgcattgttgcatcgatcattgcatggtttaattggttaagggattggaaggtgtactgcttcatcaacttgaagtgtttcattggaatggaatgatgcatgttttgaggcggctgtgctctcacaatttgttcgtgctctcaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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