2024-09-29 10:19:06, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001409046 2030 bp mRNA linear PLN 07-JUL-2022 DEFINITION Oryza sativa Japonica Group shaggy-related protein kinase alpha (LOC4327108), transcript variant 1, mRNA. ACCESSION NM_001409046 XM_015755417 VERSION NM_001409046.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2030) AUTHORS Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T, Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y, Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M, Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K, Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N, Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki T, Yoshino M, Hayashizaki Y and Yasunishi A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI696974.1, AU082508.1, CB683361.1, CB673465.1, CB673466.1 and CI105739.1. On Jul 7, 2022 this sequence version replaced XM_015755417.2. ##Evidence-Data-START## Transcript exon combination :: AK068737.1, AB059621.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-212 CI696974.1 2-213 213-424 AU082508.1 153-364 425-948 CB683361.1 235-758 949-1073 CB673465.1 463-587 1074-1533 CB673466.1 296-755 c 1534-2030 CI105739.1 53-549 FEATURES Location/Qualifiers source 1..2030 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="1" /map="1" gene 1..2030 /gene="LOC4327108" /gene_synonym="OSKgamma" /note="shaggy-related protein kinase alpha" /db_xref="GeneID:4327108" exon 1..209 /gene="LOC4327108" /gene_synonym="OSKgamma" /inference="alignment:Splign:2.1.0" exon 210..395 /gene="LOC4327108" /gene_synonym="OSKgamma" /inference="alignment:Splign:2.1.0" misc_feature 279..281 /gene="LOC4327108" /gene_synonym="OSKgamma" /note="upstream in-frame stop codon" CDS 285..1511 /gene="LOC4327108" /gene_synonym="OSKgamma" /note="Os01g0252100; P0434D08.32-1; putative protein kinase; shaggy-related protein kinase gamma" /codon_start=1 /product="shaggy-related protein kinase alpha" /protein_id="NP_001395975.1" /db_xref="GeneID:4327108" /translation="
MGSVGVAPSGLKNSSSTSMGAEKLPDQMHDLKIRDDKEVEATIINGKGTETGHIIVTTTGGRNGQPKQTVSYMAERIVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVALKHCFFSTTEKDELYLNLVLEYVPETVHRVVKHYNKMNQRMPLIYVKLYMYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAELMLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRLPPEAVDLVSRLLQYSPNLRCTAVEALVHPFFDELRDPNARLPNGRFLPPLFNFKPHELKGIPSDIMAKLIPEHVKKQCSYAGV"
misc_feature 483..1361 /gene="LOC4327108" /gene_synonym="OSKgamma" /note="The catalytic domain of the Serine/Threonine Kinase, Glycogen Synthase Kinase 3; Region: STKc_GSK3; cd14137" /db_xref="CDD:271039" misc_feature order(516..530,540..542,579..581,585..587,618..620, 660..662,723..734,741..743,747..752,873..875,879..881, 885..890,894..896,930..932,939..941,972..974,978..989, 993..995,1107..1109) /gene="LOC4327108" /gene_synonym="OSKgamma" /note="active site" /db_xref="CDD:271039" misc_feature order(516..527,540..542,579..581,585..587,660..662, 723..734,741..743,879..881,885..890,894..896,930..932) /gene="LOC4327108" /gene_synonym="OSKgamma" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:271039" misc_feature order(528..533,966..992,1014..1019,1110..1124,1128..1133, 1143..1145,1203..1214) /gene="LOC4327108" /gene_synonym="OSKgamma" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:271039" misc_feature order(618..620,747..749,873..875,879..881,939..941, 972..974,978..989,993..995,1107..1109) /gene="LOC4327108" /gene_synonym="OSKgamma" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:271039" misc_feature order(927..959,963..995) /gene="LOC4327108" /gene_synonym="OSKgamma" /note="activation loop (A-loop); other site" /db_xref="CDD:271039" misc_feature order(1014..1016,1119..1124,1128..1133,1140..1145, 1203..1220) /gene="LOC4327108" /gene_synonym="OSKgamma" /note="axin binding site [polypeptide binding]; other site" /db_xref="CDD:271039" exon 396..488 /gene="LOC4327108" /gene_synonym="OSKgamma" /inference="alignment:Splign:2.1.0" exon 489..548 /gene="LOC4327108" /gene_synonym="OSKgamma" /inference="alignment:Splign:2.1.0" exon 549..821 /gene="LOC4327108" /gene_synonym="OSKgamma" /inference="alignment:Splign:2.1.0" exon 822..896 /gene="LOC4327108" /gene_synonym="OSKgamma" /inference="alignment:Splign:2.1.0" exon 897..953 /gene="LOC4327108" /gene_synonym="OSKgamma" /inference="alignment:Splign:2.1.0" exon 954..1094 /gene="LOC4327108" /gene_synonym="OSKgamma" /inference="alignment:Splign:2.1.0" exon 1095..1145 /gene="LOC4327108" /gene_synonym="OSKgamma" /inference="alignment:Splign:2.1.0" exon 1146..1241 /gene="LOC4327108" /gene_synonym="OSKgamma" /inference="alignment:Splign:2.1.0" exon 1242..1325 /gene="LOC4327108" /gene_synonym="OSKgamma" /inference="alignment:Splign:2.1.0" exon 1326..1428 /gene="LOC4327108" /gene_synonym="OSKgamma" /inference="alignment:Splign:2.1.0" exon 1429..2030 /gene="LOC4327108" /gene_synonym="OSKgamma" /inference="alignment:Splign:2.1.0" ORIGIN
aatcatttcggtttcggagagagagagagaggatttttttttccttcggcttatgtagtattgcgctgcgtcccgacaagcaaaagcaagaggaggaggccgcggctagcgagcgagcgagagagaggggagaagaagaggtgggacagccgggagatccatccctgtggagaggagggagggaggaaggaggcgttggaggaggagaggttgaccgatagatccattgcggagttgagtgttgatgcaaagctgattcgccatcgtttagctttttataagagatgggttcagtaggggttgcgccgtctgggttaaagaacagcagtagcaccagcatgggtgctgagaagttgcctgatcagatgcatgatctgaagataagggacgataaggaagttgaagcgactattattaacggcaagggaacagaaaccggccacataattgtcacaactactggtggcagaaatggtcagccgaaacagacagttagctacatggctgagcgtattgtagggcaaggttcatttgggattgtcttccaggcaaaatgtctggagacaggtgagacagttgctatcaagaaggttcttcaggataagcgctacaagaaccgtgagcttcagaccatgcgccttcttgaccacccaaatgttgtagctctgaagcactgtttcttctctacaactgagaaggatgaactgtatctaaacttggttcttgagtatgtgcctgaaactgttcatcgtgttgtgaagcattacaacaagatgaaccagcgtatgccacttatctatgtgaagctgtatatgtaccagatttgtagggcattagcttacatccataatagcatcggagtttgccacagagatatcaagccacagaatcttctggtaaacccacatacccatcaactcaagctatgtgactttgggagtgcaaaagttctggtcaagggagaaccgaacatatcgtacatttgctcccgatactatagggctccggagctcatatttggtgccaccgaatacactacagctattgacatctggtctgctggatgtgttcttgctgaacttatgttagggcagcctctgtttcctggtgaaagtggtgtagaccaacttgtggaaatcatcaaggtccttggaacacctacaagggaggaaattaaatgcatgaatccaaactataccgagttcaagtttccacagattaaagcacacccatggcacaaggtattccataaaaggttgcctccagaagctgttgatcttgtctctaggctgctccagtactcacccaacctaagatgcactgctgtggaagcacttgttcacccattctttgatgagcttcgagaccctaatgctcgccttccgaatggccgctttttgcctcctctcttcaacttcaagcctcatgaactgaaaggaatcccatcagatattatggcgaaattgatcccagaacatgtgaagaagcaatgctcctatgcaggagtatgagacagcttccgcacgacccccctggaaatttccatgacaagtgcccatttcctcccccctggacgacgatggatcgtcagcatatgcgtgcatgatggttggtgaagatgtgaagttacgttgttgttgtatgaccaccttgttgaccagtgtagttgagtagcagtatgttgcgatggcgaaactttgacatgtaaccggtgcacccacaccatccctcccctactaaccctcacccacctgagaattgagaattcccatagctgatgatctgtaatatgttctagagcagtttaagaatgtatttattatggtgtagttgatccatatgttgggatcctcctcgtcgattttcttggttctttgtgccctagactgctacctggtttttagactgttctgaaaatgctgctagtaccttctatctactgtacttgtttgctccttggtgctattgctccagcctcagctatgaggatgctctggcatatgaacgtatggacaagttcgtcgatgacc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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