2024-09-29 10:38:19, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001406341 2348 bp mRNA linear PLN 08-APR-2024 DEFINITION Oryza sativa Japonica Group WUSCHEL-related homeobox 8-like (LOC4327441), mRNA. ACCESSION NM_001406341 XM_015770969 VERSION NM_001406341.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2348) AUTHORS Minh-Thu,P.T., Kim,J.S., Chae,S., Jun,K.M., Lee,G.S., Kim,D.E., Cheong,J.J., Song,S.I., Nahm,B.H. and Kim,Y.K. TITLE A WUSCHEL Homeobox Transcription Factor, OsWOX13, Enhances Drought Tolerance and Triggers Early Flowering in Rice JOURNAL Mol Cells 41 (8), 781-798 (2018) PUBMED 30078233 REFERENCE 2 (bases 1 to 2348) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI740584.1, AK102788.1, AK068585.1, CI125118.1 and CI560755.1. On May 13, 2022 this sequence version replaced XM_015770969.2. ##Evidence-Data-START## Transcript exon combination :: AK068585.1, AK059910.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-345 CI740584.1 4-348 346-787 AK102788.1 358-799 788-1641 AK068585.1 83-936 1642-1950 CI125118.1 1-309 1951-2348 CI560755.1 1-398 FEATURES Location/Qualifiers source 1..2348 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="1" /map="1" gene 1..2348 /gene="LOC4327441" /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8" /note="WUSCHEL-related homeobox 8-like" /db_xref="GeneID:4327441" exon 1..944 /gene="LOC4327441" /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8" /inference="alignment:Splign:2.1.0" misc_feature 473..475 /gene="LOC4327441" /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8" /note="upstream in-frame stop codon" CDS 743..1546 /gene="LOC4327441" /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8" /note="P0454H12.31; putative HB2 homeodomain protein; LOC_Os01g60270; Protein WOX13" /codon_start=1 /product="WUSCHEL-related homeobox 8" /protein_id="NP_001393270.1" /db_xref="GeneID:4327441" /translation="
MEWDKAKASSGEAVDDRGGGEGGLGYVKVMTDEQMEVLRKQISIYATICEQLVEMHRALTAQQDSIAGMRLGNLYCDPLMVPGGHKITARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQAALPNNNAESEAEADEESPTDKKPKSDRPLHQNIAMRDHNSERISEMHHFDTEHEQIRRMMYASNDSSSRSSGSLGQMSFYDNVMSNPRIDHFLGKVESPGSFPHMRSGESFDMY"
misc_feature 1010..1192 /gene="LOC4327441" /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 1184..1327 /gene="LOC4327441" /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8" /note="propagated from UniProtKB/Swiss-Prot (Q5QMM3.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 945..1463 /gene="LOC4327441" /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8" /inference="alignment:Splign:2.1.0" exon 1464..2348 /gene="LOC4327441" /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8" /inference="alignment:Splign:2.1.0" ORIGIN
tgctcctacaaagacactgccacattccttctccttcctcctgcatactgtctctctctctctctctatctgatcagctgttccgcttcctcctcttcttctctcccccaaccccgtagccctcccacccatcgagccaggcggcggcgcgacggccggtggctaaggcggcggccggtgccaaaatctcgagcaatcgcgtcgcgccgtctggccggcttgcgacatcgctcgcccgagagcgtcgtcgtcttcgagcttgtgccgcgcggcgccgtcgccgcgtggtccgagggccccgtgccaccgcgtgcagagggcagaggcccatcgcctcctcctcgagccaccgcgctgccgtgtgccgtcccccttgtcgtcctcgagcccctgcgtcgccgccggccgccggggctcctcctcctcgtcctcctcgtcatcgacgccccaatcggcaccgcctcctggtcgttaaaaccatcctcgggcctttcgccaattggaaggcgccatcttttccgcattctttccatccggattccggccgctgttgctgtctggcggaatatctgtttcgccagattttcttgcgtttcgatttctttttattattttcctgagagagagagagagagagagagagagagagagagagagagagagagagagagggttccttccatttcgctgctgcgccaaagaacacaactttcccaattccttttcgcctccctgtagaggcatggagtgggacaaggccaaggcgtcctccggcgaggcggtggacgacaggggcggaggggaaggagggctcgggtacgtgaaggtgatgacggacgagcagatggaggtgctccggaagcagatctccatctacgccaccatctgcgagcagctcgtcgagatgcaccgcgccctcaccgcgcagcaggactccattgcaggaatgaggcttggtaatctgtactgtgatcctctaatggttcccggaggtcacaagatcacagcaaggcagcgatggacaccaaccccaatgcagttgcagattcttgagaacatctttgaccaaggcaatggaacaccaagcaagcaaaagataaaggacataacagcagagctctcacagcatggccagatctcagagacaaatgtctataactggttccagaacaggcgggcacgatcgaaacggaagcaagctgctttaccaaataataatgcagaatctgaagctgaagcggatgaggagtccccaactgacaaaaaacccaaatcagataggccgcttcaccagaacatagccatgagagatcacaatagcgaaaggatctcggagatgcaccactttgacacggagcatgagcaaatccgtcgtatgatgtatgcatccaatgacagtagctcgcgatcgtcaggcagtttgggccagatgtccttctacgacaatgttatgtcaaatccaagaatcgatcatttccttggtaaggtggagagccccgggagcttcccccacatgcgatccggtgaaagctttgatatgtattgatgacgcggcaattctggattctggttactaggttcgttgcattagacaccatactgttttcccctgtaaaaagtgaagctggtaacttgccgttcattttgcttactgaaattgcgaagtttgccttacgtccacacgttggttatcatggtcttgtcgacattctacggagaatagctagttctagtgtaaacctgttctgttgctgaattagctgcaagaagccgataaatagcactctgcacacttaggtgttaggtgattgtgtggatatttcttgatggtgagtttgtaacgatcttctttcactttgtcctgaaggctgaatcgatcagcgctacaaatgagttagtagttttaaaggttgctcttgtccatggtaaagcttttggtctgataaagtctcatgatcgcgttgccatctgccagaaaattggagtttcttcgattgtgaagatcattgagttggagattagacaatgcttgttgatgatactatgggcatgttggcaagtggcatggtttgccagattttgactaaaccaaatgttgcttcttgactatgtacaatcctctatagcttcaatgagcagttttccctatgttgtcctcataggatttgccttacactatagtttgaaaggactatgatctactagctatacaaattctcggaatgcatcgtatcgtttagatgggcaaatggaatcatgaaaccggtactgtattcattagcctttgaaccattgtatttatttaggttcattagccttctgttatgtattgagcttagatattttgc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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