LOCUS       NM_001406315            3031 bp    mRNA    linear   PLN 01-MAY-2025
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX29-like (LOC4327348), mRNA.
ACCESSION   NM_001406315 XM_015769204
VERSION     NM_001406315.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3031)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AB374207.1 and CI232984.1.
            
            On May 13, 2022 this sequence version replaced XM_015769204.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB374207.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00497392,
                                           SAMD00497393 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2548              AB374207.1         1-2548
            2549-3031           CI232984.1         18-500
FEATURES             Location/Qualifiers
     source          1..3031
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="1"
                     /map="1"
     gene            1..3031
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /note="homeobox-leucine zipper protein HOX29-like"
                     /db_xref="GeneID:4327348"
     exon            1..753
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    197..199
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /note="upstream in-frame stop codon"
     CDS             230..2836
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /note="putative homeobox leucine-zipper protein;
                     homeodomain leucine zipper protein 29; class III
                     homeodomain-leucine zipper protein; HD-ZIP protein HOX29;
                     Homeodomain transcription factor HOX29; LOC_Os01g10320"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX29"
                     /protein_id="NP_001393244.1"
                     /db_xref="GeneID:4327348"
                     /translation="

MVASAAAMDASKYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECPALANVDPKQIKVWFQNRRCREKQRKESSRLQALNRKLTAMNKLLMEENDRLQKQVSQLVYDHGRHGVAAAGMMRRVPAFPPQAAAAAGHQLATATDTSCESVVTSGHHHQQQQHNVVQPPPRDASPAGLMSIAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPAKVAEILKDRPLWLRDCRSMDVVNVLPAGANGTIELLYMQLYAPTTLAPARDFWLLRYTSILDDGSLVVCERSLSSKQGGPSMPLVQPFIRGEMLPSGFLIRPSDVGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKISMAALRYLRQVAHEDTRSVITGWGRQPAALRALSQKLTRGFNEALNGLADDGWSVIESDGVDDVCISVNSSKVIGCNATFSSGLPIVSTGVLCAKASMLLQDVSPPSLLQFLREHRSQWADSNLDAFFASTMKPNFCNLPMSRLGGFSGQVILPLAHTFEPEEFLEVIKLGNASNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFSDDSPLLPSGFRIIPIDSPLDTSSPNCTLDLASTLEAATPRSRISGVNGGGGGCAAAAASSSSKAVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQLSPVTPEAATLPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCCSLKAMPVFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGGVCVSSVGRAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL"

     misc_feature    263..439
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    <419..538
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /note="Basic leucine zipper (bZIP) domain of bZIP
                     transcription factors: a DNA-binding and dimerization
                     domain; Region: bZIP; cd14686"
                     /db_xref="CDD:269834"
     misc_feature    order(437..439,446..451,458..463,467..472,479..484,
                     488..493,500..505,509..514,521..526,530..535)
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269834"
     misc_feature    677..742
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5QMZ9.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    746..1390
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /note="C-terminal lipid-binding START domain of the
                     Arabidopsis homeobox protein GLABRA 2 and related
                     proteins; Region: START_ArGLABRA2_like; cd08875"
                     /db_xref="CDD:176884"
     misc_feature    order(830..835,857..859,902..904,908..910,941..943,
                     953..955,965..967,974..979,980..985,1052..1054,1058..1069,
                     1076..1078,1085..1087,1091..1093,1097..1099,1145..1147,
                     1208..1210,1214..1225,1229..1231,1265..1267,1271..1273,
                     1277..1279,1283..1285,1289..1291,1295..1297,1319..1321,
                     1325..1333,1337..1345,1352..1357,1364..1366)
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /note="putative lipid binding site [chemical binding];
                     other site"
                     /db_xref="CDD:176884"
     misc_feature    2390..2830
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /note="MEKHLA domain; Region: MEKHLA; pfam08670"
                     /db_xref="CDD:462555"
     exon            754..844
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /inference="alignment:Splign:2.1.0"
     exon            845..940
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1054
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /inference="alignment:Splign:2.1.0"
     exon            1055..1138
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /inference="alignment:Splign:2.1.0"
     exon            1139..1294
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /inference="alignment:Splign:2.1.0"
     exon            1295..1369
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /inference="alignment:Splign:2.1.0"
     exon            1370..1476
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /inference="alignment:Splign:2.1.0"
     exon            1477..1663
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /inference="alignment:Splign:2.1.0"
     exon            1664..1849
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /inference="alignment:Splign:2.1.0"
     exon            1850..1927
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /inference="alignment:Splign:2.1.0"
     exon            1928..2062
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /inference="alignment:Splign:2.1.0"
     exon            2063..2424
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /inference="alignment:Splign:2.1.0"
     exon            2425..2536
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /inference="alignment:Splign:2.1.0"
     exon            2537..2686
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /inference="alignment:Splign:2.1.0"
     exon            2687..3031
                     /gene="LOC4327348"
                     /gene_synonym="B1015E06.7; hox29; OSHB5; OsHox29"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

acatgtgccaaatgtgcattcgccggcgacgtcgcagccgggaactttcctttttcccgcaatttattagcgcgcgcgcgccgcgccaccgccgtcctcgcgtttaaaggcgacgagacgacgaacaacacgaagctctccttccccccctcacctcgatgtcgccatcgagctctacgccttctcggctatagcctagcttgcttgcattgagctcgatcgatctggcatggtggcgtcggcggcggcgatggacgcgagcaagtacgtgaggtacacgccggagcaggtggaggcgctggagaggctgtactacgagtgtcccaagccgagctcgctgcggcggcagcagctggtgcgggagtgcccggcgctggcgaacgtggacccgaagcagatcaaggtgtggttccagaaccgccggtgccgggagaagcagcgcaaggagtcgtcgcggctgcaggcgctcaaccgcaagctcaccgccatgaacaagctcctcatggaggagaacgaccgcctccagaagcaggtctcccagctcgtctacgaccacggccgccacggcgtcgccgccgccgggatgatgcggcgagttcctgccttccctcctcaggccgccgccgccgccggccaccagctcgccaccgccaccgacaccagctgcgagtcggtcgtcaccagcggccatcatcatcagcagcagcagcacaacgtcgtccagccgccgccgcgcgacgcaagcccagctgggctgatgtcgatcgcggaggagacattgacggagtttctgtccaaggccaccggaaccgccgtcgagtggctccaaatgcctgggatgaagcctggtccggattccattggaatcatcgccatctcgcatggctgcgccggcgtcgccgcgcgagcttgcggcctcgtcggcatggagcccgctaaggttgccgaaatactcaaggatcggccgctgtggctgcgcgattgccggtccatggatgtggtgaacgtgctccctgctggcgccaacggcaccatcgagctgctctacatgcagctctatgctccgacgacgctggcgccggctcgcgacttctggctgctgcggtacacctccattctcgacgatggaagcttagtggtgtgtgagagatcactcagtagcaagcaaggaggcccaagcatgccacttgtccagccttttatcagaggtgagatgcttcccagtgggttcttgatccggcctagcgatgttggaggcagcgtgatacacatcgttgatcatatggacctcgagccttggagcgtgcctgaagttgtacgacctttgtatgaatcttctgccatggttgcgcagaagatctcgatggcggctttgcgctacctgaggcaggttgcacacgaagatacacgttctgtgatcacaggatggggaaggcagcctgcggctttgcgtgctctgagccaaaagctcaccagaggattcaatgaagctctcaatgggcttgccgatgatggatggtccgtgatcgagagcgatggcgtcgacgatgtttgcatctctgtcaattcatccaaagtgatcggttgcaatgcaacattcagcagtggactccctattgtcagtaccggtgttctttgtgccaaggcatccatgctgttgcaggatgtctctcctccatcactactgcaatttttgcgcgaacaccggtcacagtgggccgacagcaatttagacgcattcttcgcctccacgatgaaaccaaacttctgcaatttacccatgtcccgtcttggaggattcagtggtcaggtcatacttcctttagcacacacgtttgaacctgaagagttcctggaagttatcaagctaggaaacgccagcaactaccaagatacactggtgcaccgtgatctgttcctcttgcagatgtacaatggagtagaggagagcagtgcaggaacatgttcagagctcatctttgcgcccatcgacgcatcgttcagtgatgattccccactgctgccttccggtttccgcatcatcccaatcgattctcctctcgacacgtcgagcccgaactgcacgttggatctcgcgtccacgctcgaagccgcgacgccacggagcaggatcagcggcgtcaatggcggcggcggcggctgtgctgctgctgcggcgagctctagctccaaggcggtgatgacgatcgcgttccagttcgcgttcgacggccacctgcaggacagcgtggccgccatggcgcggcagtacatgcgcaacatcatctcgtcggtgcagaggatcgccgtggcgctctcgtcctcccgcctcgtccctcccggcgccggcgccgccgccgcgcagctctcaccggtgactccggaggcggcgacgctgcccagatggatttgccagagctacagatttcattttggagatgaactcatcaaatctgtagatgcaaacagcagcaatgaatcgattctgaaagcagtttggcatcatccgagtgccatactctgctgctctctcaaggcgatgccagtgttcacatttgcaaaccagtctggcctcgacatgctcgaaacaactctggtggcgctccaagacatgacgctggagaaagttttcgacgatcaagggaggaagaacctgtgcacagagctccccaacatcatggagcaggggatggcgtgcatggagggaggggtgtgcgtgtcgagcgttgggagggcggcgtcgtacgagaaggcggtggcgtggaaggtggtcgacggcgacggcggcggcgcccactgcatctgcttcatgttcatcaactggaccttcctttgatttcatttcattatacaccccaatgcaaaacggatatataatattacaactagtgcaatttacgtacgtaatctcatgaaacagcgtgtacaaatgttttggattttgagaaccgcggtgctagtttttgtacggatcgatagtggatacattctctgttcggagtagggataaaaatggcttcttctttttttt

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