2024-09-29 10:23:59, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001406185 1540 bp mRNA linear PLN 08-APR-2024 DEFINITION Oryza sativa Japonica Group fructose-bisphosphate aldolase 3, cytoplasmic-like (LOC4325027), mRNA. ACCESSION NM_001406185 XM_015758323 VERSION NM_001406185.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1540) AUTHORS Jantasuriyarat,C., Gowda,M., Haller,K., Hatfield,J., Lu,G., Stahlberg,E., Zhou,B., Li,H., Kim,H., Yu,Y., Dean,R.A., Wing,R.A., Soderlund,C. and Wang,G.L. TITLE Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction JOURNAL Plant Physiol 138 (1), 105-115 (2005) PUBMED 15888683 REFERENCE 2 (bases 1 to 1540) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CF277335.1, CB657388.1, C99285.1 and CI245249.1. On May 10, 2022 this sequence version replaced XM_015758323.2. ##Evidence-Data-START## Transcript exon combination :: EF122473.1, GQ848028.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMN03003175 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-408 CF277335.1 7-414 409-901 CB657388.1 325-817 902-990 C99285.1 251-339 991-1540 CI245249.1 1-550 FEATURES Location/Qualifiers source 1..1540 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="1" /map="1" gene 1..1540 /gene="LOC4325027" /gene_synonym="AldC-1; aldolase; FBA3" /note="fructose-bisphosphate aldolase 3, cytoplasmic-like" /db_xref="GeneID:4325027" exon 1..157 /gene="LOC4325027" /gene_synonym="AldC-1; aldolase; FBA3" /inference="alignment:Splign:2.1.0" misc_feature 28..30 /gene="LOC4325027" /gene_synonym="AldC-1; aldolase; FBA3" /note="upstream in-frame stop codon" CDS 130..1206 /gene="LOC4325027" /gene_synonym="AldC-1; aldolase; FBA3" /EC_number="4.1.2.13" /note="putative fructose-bisphosphate aldolase isoenzyme C-1; B1417F08.1-2; LOC_Os01g67860; B1417F08.1-1; Aldolase C-1" /codon_start=1 /product="fructose-bisphosphate aldolase 3, cytoplasmic" /protein_id="NP_001393114.1" /db_xref="GeneID:4325027" /translation="
MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLFTTPGALQHLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGTVEVAGTNKETTTQGHDDLGKRCAKYYEAGARFAKWRAVLKIGPNEPSQLSIDLNAQGLARYAIICQENGLVPIVEPEILVDGSHDIERCAYVTEKVLAACYKALNEHHVLLEGSLLKPNMVTPGSESKKVSPQLIAEYTVRALQRTVPAAVPAIVFLSGGQSEEEATVNLNAMNKLSTKKPWALSFSFGRALQQSTLKAWGGKTENVVKAQKAFITRCKANSEATLGTYQGDAVLGEGASESLHVKDYKY"
misc_feature 130..1203 /gene="LOC4325027" /gene_synonym="AldC-1; aldolase; FBA3" /note="fructose-bisphosphate aldolase; Region: PLN02455" /db_xref="CDD:178074" misc_feature order(217..225,232..234,436..438,553..555,559..561, 676..678,802..804,922..930,1012..1014,1018..1023) /gene="LOC4325027" /gene_synonym="AldC-1; aldolase; FBA3" /note="active site" /db_xref="CDD:188635" misc_feature order(445..447,598..600,607..612,619..621,631..633, 640..642,724..726,736..738,745..747,766..771,775..777, 787..789,883..888,892..894) /gene="LOC4325027" /gene_synonym="AldC-1; aldolase; FBA3" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:188635" misc_feature 802..804 /gene="LOC4325027" /gene_synonym="AldC-1; aldolase; FBA3" /note="catalytic residue [active]" /db_xref="CDD:188635" misc_feature 1201..1203 /gene="LOC4325027" /gene_synonym="AldC-1; aldolase; FBA3" /note="Necessary for preference for fructose 1,6-bisphosphate over fructose 1-phosphate. /evidence=ECO:0000250|UniProtKB:P00883; propagated from UniProtKB/Swiss-Prot (Q5N725.1); other site" exon 158..1517 /gene="LOC4325027" /gene_synonym="AldC-1; aldolase; FBA3" /inference="alignment:Splign:2.1.0" ORIGIN
gcgtccaagactggactctcctctttataacccgtctcccttctcatctttttctccacagtcgcctcctcccctgccaaaccagtctcccccaaatctcctttgcgtcctctcgattcctcagcgaccatgtcggcctactgcggcaagtacaaggacgagctcatcaagaatgctgcctacattggcactcctggcaagggtatccttgctgcagatgagtccactggcaccattggcaagcgctttgccagcatcaatgtcgagaacgttgaggagaaccgccgctctctccgcgagctgctcttcaccacccctggtgccctccagcacctaagtggtgtgatcctcttcgaggagaccctgtaccagaagaccaaggacggcaagcccttcgtcgatgtcctcaaggagggtggtgtcctccctggcatcaaggttgacaagggtaccgttgaggttgccggcaccaacaaagagaccaccacccagggccacgatgatcttggcaagcgttgcgccaagtactacgaggccggtgcccgcttcgccaagtggcgtgctgtcctcaagattggccccaacgagccatcgcagctttccattgacctgaatgctcagggtcttgctcgctatgccatcatctgccaggagaacgggctggtgccgattgtcgagcctgagatccttgtcgatggctctcatgacattgagcgctgtgcctatgtcaccgagaaggtcctcgctgcctgctacaaggccctcaacgaacaccatgtcctcctggagggttccctcctgaagcccaacatggtcaccccaggatctgaatccaagaaggtttcccctcagctcatcgccgagtacaccgtccgcgccctccagaggactgtccctgctgccgtgcctgccattgtcttcctctctggtggacagagcgaggaggaggcgaccgtgaacctcaacgccatgaacaagctcagcaccaagaagccgtgggctctgtccttctccttcggccgtgctctccagcagagcacgctcaaggcctggggcggcaagacggagaacgtggtgaaggcgcagaaggccttcatcaccaggtgcaaggccaactctgaggctacccttggtacataccagggtgatgctgtgctcggcgagggtgcctctgagagccttcacgtcaaggactacaagtactgatctgcttctggtggtggctgaagatccgattggacatcctccgtatgcatatttagggttctgagtgtggtttggctatcaagcgtccaatcttacgggtatcaaaaacttttgtcgcaataatctgaacctgtgctttttaataattaatacctgtcatcggtagtagttttttggtattcctgtaatcaaatgctgcgtatggtaaattggagcagcggctttaattccatgctatctttttattgttattttctgctgtactcctatgttaattaaaccttttacctatatggcgttttgctgtgtctaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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