2024-09-29 10:30:03, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001403120 711 bp mRNA linear PLN 01-JAN-2023 DEFINITION Oryza sativa Japonica Group uncharacterized LOC4343647 (LOC4343647), transcript variant 1, mRNA. ACCESSION NM_001403120 XM_015790154 VERSION NM_001403120.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 711) AUTHORS Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E, Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang GL. TITLE Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction JOURNAL Plant Physiol 138 (1), 105-115 (2005) PUBMED 15888683 REFERENCE 2 (bases 1 to 711) AUTHORS Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T, Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y, Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M, Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K, Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N, Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki T, Yoshino M, Hayashizaki Y and Yasunishi A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK062660.1 and CI031150.1. On Mar 28, 2022 this sequence version replaced XM_015790154.2. ##Evidence-Data-START## Transcript exon combination :: AK062660.1, CI031150.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03003175, SAMN04338663 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-190 AK062660.1 1-190 191-711 CI031150.1 1-521 FEATURES Location/Qualifiers source 1..711 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="7" /map="7" gene 1..711 /gene="LOC4343647" /gene_synonym="OJ1019_E02.7" /note="uncharacterized LOC4343647" /db_xref="GeneID:4343647" exon 1..308 /gene="LOC4343647" /gene_synonym="OJ1019_E02.7" /inference="alignment:Splign:2.1.0" CDS 32..535 /gene="LOC4343647" /gene_synonym="OJ1019_E02.7" /note="isoform 1 is encoded by transcript variant 1; Os07g0568900" /codon_start=1 /product="uncharacterized LOC4343647 isoform 1" /protein_id="NP_001390049.1" /db_xref="GeneID:4343647" /translation="
MHLRFVPFPAIAVGGASLRFLADNTRAVGGSGRRRCSDVVAFSSSEKGPGPGSGEEREPRAEEALRRLAELDSQLEGLSEPRERPPAPPLPPDPYMDRDMITGRGSKDELPEFSPTYVTFSTLALVILTIFTNVVFNLYIKPSVDGVDQPVRIERVPMVNPADQQFK"
exon 309..711 /gene="LOC4343647" /gene_synonym="OJ1019_E02.7" /inference="alignment:Splign:2.1.0" ORIGIN
atccacatcgcggctgtgcgcggcggcgaggatgcatctccgcttcgtcccgttcccggcgatcgccgtcggcggagcgagcttgagattcctcgccgataacacacgtgcagtgggcggaagcgggaggaggcggtgctccgacgtggtcgccttctcgtcgtcggagaaggggccggggccggggtcgggggaggagcgcgagccgcgggctgaggaggcgctgcggcggctggcggagctcgactcgcagctggaggggctttccgagcccagggaacggccgccggcgccgcctcttccaccggacccttacatggaccgagatatgataactgggcggggatcaaaagatgaacttcctgaattttctccaacgtatgtaacattctcaacacttgcacttgttatcctcacgatattcaccaacgttgtgttcaatctttacatcaaaccttccgtggacggcgtcgatcagcctgtaagaattgagagggtgcctatggttaatccagcagaccagcaattcaagtagcttctagactaggcatataaatttgttatagcaagaagtgatatgatatgctagtaaaatagatcatgattcatgtgtattcaaccatatcttctttttgtatttagcacccatacgttctaaatgaatcattttgttggctctgggaattcaataatagtaggacgttttgcaca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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