2024-09-29 10:18:39, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001402992 1628 bp mRNA linear PLN 08-APR-2024 DEFINITION Oryza sativa Japonica Group homeobox protein knotted-1-like 12 (LOC4342320), mRNA. ACCESSION NM_001402992 XM_015790631 VERSION NM_001402992.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1628) AUTHORS Cui,X., Zhang,Z., Wang,Y., Wu,J., Han,X., Gu,X. and Lu,T. TITLE TWI1 regulates cell-to-cell movement of OSH15 to control leaf cell fate JOURNAL New Phytol 221 (1), 326-340 (2019) PUBMED 30151833 REMARK GeneRIF: OSH15 cell-to-cell movement is regulated by TWI1. REFERENCE 2 (bases 1 to 1628) AUTHORS Yoon,J., Cho,L.H., Antt,H.W., Koh,H.J. and An,G. TITLE KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes JOURNAL Plant Physiol 174 (1), 312-325 (2017) PUBMED 28351912 REMARK GeneRIF: Data show that homeobox protein OSH15 (OSH15) messenger RNAs were abundant in the abscission zone (AZ) during spikelet development. REFERENCE 3 (bases 1 to 1628) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] REFERENCE 4 (bases 1 to 1628) AUTHORS Ito,Y., Eiguchi,M. and Kurata,N. TITLE Expression of novel homeobox genes in early embryogenesis in rice JOURNAL Biochim Biophys Acta 1444 (3), 445-450 (1999) PUBMED 10095070 REFERENCE 5 (bases 1 to 1628) AUTHORS Sato,Y., Sentoku,N., Nagato,Y. and Matsuoka,M. TITLE Isolation and characterization of a rice homebox gene, OSH15 JOURNAL Plant Mol Biol 38 (6), 983-998 (1998) PUBMED 9869405 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI775917.1, FJ940208.1, CI279055.1 and AB007623.1. On Mar 24, 2022 this sequence version replaced XM_015790631.2. ##Evidence-Data-START## Transcript exon combination :: AB007623.1, AB016071.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-386 CI775917.1 1-386 387-732 FJ940208.1 302-647 733-1186 CI279055.1 1-454 1187-1628 AB007623.1 1185-1626 FEATURES Location/Qualifiers source 1..1628 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="7" /map="7" gene 1..1628 /gene="LOC4342320" /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2" /note="homeobox protein knotted-1-like 12" /db_xref="GeneID:4342320" exon 1..529 /gene="LOC4342320" /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2" /inference="alignment:Splign:2.1.0" misc_feature 134..136 /gene="LOC4342320" /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2" /note="upstream in-frame stop codon" CDS 191..1258 /gene="LOC4342320" /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2" /note="KNOX class 1 homeodomain protein; KNOX class homeodomain protein; OSJNBa0088O14.22; Homeobox protein HOS3; Homeobox protein OSH15; Homeobox protein knotted-1-like 3; LOC_Os07g03770" /codon_start=1 /product="homeobox protein knotted-1-like 12" /protein_id="NP_001389921.1" /db_xref="GeneID:4342320" /translation="
MDQSFGNLGGGGGAGGSGKAAASSFLQLPLSTAAAATAYYGTPLALHQAAAAAGPSQYHGHGHPHHGGGHHHSKHGGAGGGEISAAEAESIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERLTATAAKLDARPPGRHDARDPELDQFMEAYCNMLAKYREELTRPIDEAMEFLKRVESQLDTIAGGAHGGGAGSARLLLADGKSECVGSSEDDMDPSGRENEPPEIDPRAEDKELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSEDMPFVMMEGFHPQNAAALYMDGPFMADGMYRLGS"
misc_feature 344..436 /gene="LOC4342320" /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2" /note="propagated from UniProtKB/Swiss-Prot (O80416.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 458..577 /gene="LOC4342320" /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2" /note="KNOX1 domain; Region: KNOX1; pfam03790" /db_xref="CDD:461051" misc_feature 605..745 /gene="LOC4342320" /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2" /note="KNOX2 domain; Region: KNOX2; pfam03791" /db_xref="CDD:427506" misc_feature 809..889 /gene="LOC4342320" /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2" /note="propagated from UniProtKB/Swiss-Prot (O80416.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 896..961 /gene="LOC4342320" /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2" /note="ELK domain; Region: ELK; pfam03789" /db_xref="CDD:427504" misc_feature 1019..1135 /gene="LOC4342320" /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 530..640 /gene="LOC4342320" /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2" /inference="alignment:Splign:2.1.0" exon 641..797 /gene="LOC4342320" /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2" /inference="alignment:Splign:2.1.0" exon 798..1051 /gene="LOC4342320" /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2" /inference="alignment:Splign:2.1.0" exon 1052..1628 /gene="LOC4342320" /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2" /inference="alignment:Splign:2.1.0" ORIGIN
gtagtatacacctccacctttcccttccattaatacctccaccccccactcctctcccccatctcccctccctctcgccattggagctagacagctcgagctccaggaggaagaagagagagagcctagctgctagggtttccatcggatttggttttttattttctttttgtttcttgtgtgtgttttgatggatcagagctttgggaatcttggaggaggaggaggagcaggggggagcggcaaggcggcggcgtcgtcgttcctgcagctgccgctgtccacggcggcggcggccaccgcgtactacggcacgccgctcgccttgcaccaggcggcggccgcggctggcccgtcgcagtaccacggtcacggtcacccccaccacggcggcggccaccaccacagcaagcacggcggcgccggtggtggggagatctcggcggcggaggccgagtccatcaaggccaagatcatggcgcacccccagtactccgccctcctcgcagcctacctcgactgccagaaagtcggagcgccgccggaggtgctggagaggctgaccgccacggcggcaaagctggacgcccgccctcccggccgccacgacgcgcgcgacccggagctcgaccagttcatggaggcgtactgcaacatgctggccaagtacagggaggagctgacgcggccgatcgacgaggccatggagttcctcaagagggtggagtcgcagctcgacaccatcgccggcggcgcccatggcggcggcgccggctcggcgcgcctcctcctcgccgatggtaaatctgaatgtgttggttcttctgaggatgacatggacccaagtggccgcgaaaacgagccgcctgagatcgacccgcgcgctgaggataaggagctcaagtttcagcttctgaagaagtacagtggctacttgagcagcctaaggcaagaattttccaagaaaaagaagaaaggaaagctgcctaaggaggccaggcagaagctgcttcactggtgggagctgcactacaagtggccttacccctcagagacggagaagattgcgcttgcggaatcgacaggactagatcagaagcagatcaacaactggttcatcaaccagaggaaacggcactggaagccatcggaggacatgccgttcgtcatgatggaaggttttcacccacagaatgctgctgcattgtacatggatggcccgttcatggcagatggaatgtaccgcctcggttcgtgaacctcgatctcgatcatcggcgtgtttgatgagagatccaatgccaagataaattgatcatggaatgtattcagcatgcgttgcaatgcatggacattgttatggaatttttggtttatttacctttcaccgtggattgacaaggtctcgatcatgttagtgttgatggcttatagttctccagtaatgttgttgtttttcctttcgatggcttgtaaaagtttaggtgtatcggaatttcgatcaacttgctcgtacgctggtaattaatttggtgatggtctatatgttgtatggttgtgcgtttcagattggtgttcaaagttgcctatctgaaacaattatatatatttatattgcttctcatttt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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