2024-09-29 10:24:41, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001402899 1537 bp mRNA linear PLN 08-APR-2024 DEFINITION Oryza sativa Japonica Group homeobox protein knotted-1-like 11 (LOC4341661), transcript variant 2, mRNA. ACCESSION NM_001402899 XM_015788904 VERSION NM_001402899.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1537) AUTHORS Jantasuriyarat,C., Gowda,M., Haller,K., Hatfield,J., Lu,G., Stahlberg,E., Zhou,B., Li,H., Kim,H., Yu,Y., Dean,R.A., Wing,R.A., Soderlund,C. and Wang,G.L. TITLE Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction JOURNAL Plant Physiol 138 (1), 105-115 (2005) PUBMED 15888683 REFERENCE 2 (bases 1 to 1537) AUTHORS Ito,Y., Hirochika,H. and Kurata,N. TITLE Organ-specific alternative transcripts of KNOX family class 2 homeobox genes of rice JOURNAL Gene 288 (1-2), 41-47 (2002) PUBMED 12034492 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI596601.1, AB061818.1, CB676086.1 and CI417929.1. On Mar 23, 2022 this sequence version replaced XM_015788904.2. ##Evidence-Data-START## Transcript exon combination :: AK289177.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN05863939, SAMN05863941 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-175 CI596601.1 2-176 176-933 AB061818.1 181-938 934-1393 CB676086.1 100-559 c 1394-1537 CI417929.1 286-429 FEATURES Location/Qualifiers source 1..1537 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="6" /map="6" gene 1..1537 /gene="LOC4341661" /gene_synonym="HOS59; OJ1226_A12.18" /note="homeobox protein knotted-1-like 11" /db_xref="GeneID:4341661" exon 1..400 /gene="LOC4341661" /gene_synonym="HOS59; OJ1226_A12.18" /inference="alignment:Splign:2.1.0" CDS 50..985 /gene="LOC4341661" /gene_synonym="HOS59; OJ1226_A12.18" /note="isoform 2 is encoded by transcript variant 2; KNOX family class 2 homeodomain protein; OSJNBa0062J02.2; Homeobox protein HOS59; LOC_Os06g43860" /codon_start=1 /product="homeobox protein knotted-1-like 11 isoform 2" /protein_id="NP_001389828.1" /db_xref="GeneID:4341661" /translation="
MAFHYQDHALAMDAAAAAAETGGHHHPGFVGAGGVVGGGGGGGWEREKAAIAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAATAAAAAAAAGGAPSGGEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREGSGATMSDDEDNQVDSESNMFDGNDGSDGMGFGPLMLTEGERSLVERVRQELKHELKQGYREKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPASSSSDKSKRKR"
misc_feature 191..298 /gene="LOC4341661" /gene_synonym="HOS59; OJ1226_A12.18" /note="KNOX1 domain; Region: KNOX1; pfam03790" /db_xref="CDD:461051" misc_feature 383..520 /gene="LOC4341661" /gene_synonym="HOS59; OJ1226_A12.18" /note="KNOX2 domain; Region: KNOX2; pfam03791" /db_xref="CDD:427506" misc_feature 521..589 /gene="LOC4341661" /gene_synonym="HOS59; OJ1226_A12.18" /note="propagated from UniProtKB/Swiss-Prot (Q94LW4.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 689..754 /gene="LOC4341661" /gene_synonym="HOS59; OJ1226_A12.18" /note="ELK domain; Region: ELK; pfam03789" /db_xref="CDD:427504" misc_feature order(758..772,776..778,836..838,854..856,893..895, 899..904,911..916,920..928,932..937) /gene="LOC4341661" /gene_synonym="HOS59; OJ1226_A12.18" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(764..766,773..775,902..904,911..916,923..925) /gene="LOC4341661" /gene_synonym="HOS59; OJ1226_A12.18" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 812..928 /gene="LOC4341661" /gene_synonym="HOS59; OJ1226_A12.18" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 401..521 /gene="LOC4341661" /gene_synonym="HOS59; OJ1226_A12.18" /inference="alignment:Splign:2.1.0" exon 522..712 /gene="LOC4341661" /gene_synonym="HOS59; OJ1226_A12.18" /inference="alignment:Splign:2.1.0" exon 713..844 /gene="LOC4341661" /gene_synonym="HOS59; OJ1226_A12.18" /inference="alignment:Splign:2.1.0" exon 845..981 /gene="LOC4341661" /gene_synonym="HOS59; OJ1226_A12.18" /inference="alignment:Splign:2.1.0" exon 982..1514 /gene="LOC4341661" /gene_synonym="HOS59; OJ1226_A12.18" /inference="alignment:Splign:2.1.0" ORIGIN
gtcttcctcctccacctcgcgcgctgcagcagcagcagcggtgcgcgtgatggcgttccactaccaggaccacgcgctggcgatggacgccgcggctgcggcggcggagacgggcggccaccaccaccctgggttcgtcggggcgggaggagttgtggggggaggaggaggaggagggtgggagcgggagaaggccgccatcgcggcgcacccgctgtacgagcggctgctggaggcgcacgtcgcgtgcctccgcgtcgccacccccgtcgaccagctgccccgcatcgacgcgcagattgcggcgcgccccccgccgctggccgccgccacggccgcagcggcggccgcggcggccggaggggcgccgtccggcggcgaggagctcgacctcttcatgacccattatgtattgctcctttgttcgttcaaggaacaactacagcaacatgtgcgtgttcatgcaatggaagcagtaatggcttgctgggaacttgaacaaactttacagagccttacaggggcatctcctcgtgaaggttctggagcaactatgtctgatgacgaagacaatcaggttgatagtgagagcaacatgtttgatggaaatgatggatcagatggtatgggctttggccccttaatgctgacggagggcgagagatcattagttgagcgtgtacggcaagagctgaaacatgagcttaaacaggggtacagagaaaagcttgtggacattagggaagagatactccgaaagcgaagagctggaaaactcccaggagatacagcgtctactttgaaagcatggtggcaggctcactctaaatggccatacccaactgaggaggacaaggctcgcttggtgcaggaaacagggttgcaactaaaacagatcaataattggtttatcaaccaacgtaaacggaactggcacagcaatcctgcttcatcctcatcagacaaaagcaagagaaaaaggtgatggcaaggccgagcaatcttggtagaacgtggttggagaagaagtatatatatgtaaataatgcatccattgtgaagaatgccagtatatttattgctcccaagatggcgattcggacagaagcttcctggggctaatttatacgaaagaaattatgtcatgttataattttagtcatgtgaagctatagtgcgtatatatagtgacttaccagagagtagtttttatgtttgctgttggctagtgtgcatttgtagttgggacgtgctggctgtctctctacagctcggtacaaccatgtatttataacgtgttgtgaagcatatgttgtaaaatcgtggaatgggagtgttctgcgatccccatatgttgttgtaatgttgtatattgatgaccatgctgcaacggcagcatgtttgtaactcgttatatcctcaggctcttgtgttgttacaaattacagaactatattgtctttaacgagcatctcctgttgaattaataatagccagacagtcagatttttgttaaaaaaaaaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]