2024-09-29 10:34:23, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001402524 1442 bp mRNA linear PLN 08-APR-2024 DEFINITION Oryza sativa Japonica Group fructose-bisphosphate aldolase 1, cytoplasmic-like (FBA1), mRNA. ACCESSION NM_001402524 XM_015783766 VERSION NM_001402524.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1442) AUTHORS Zhang,F., Zhang,P., Zhang,Y., Wang,S., Qu,L., Liu,X. and Luo,J. TITLE Identification of a peroxisomal-targeted aldolase involved in chlorophyll biosynthesis and sugar metabolism in rice JOURNAL Plant Sci 250, 205-215 (2016) PUBMED 27457997 REMARK GeneRIF: OsAld-Y participates in Chl accumulation, chloroplast development and plant growth by influencing the photosynthetic rate of leaves and the sugar metabolism of rice. REFERENCE 2 (bases 1 to 1442) AUTHORS Jantasuriyarat,C., Gowda,M., Haller,K., Hatfield,J., Lu,G., Stahlberg,E., Zhou,B., Li,H., Kim,H., Yu,Y., Dean,R.A., Wing,R.A., Soderlund,C. and Wang,G.L. TITLE Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction JOURNAL Plant Physiol 138 (1), 105-115 (2005) PUBMED 15888683 REFERENCE 3 (bases 1 to 1442) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] REFERENCE 4 (bases 1 to 1442) AUTHORS Hidaka,S., Kadowaki,K., Tsutsumi,K. and Ishikawa,K. TITLE Nucleotide sequence of the rice cytoplasmic aldolase cDNA JOURNAL Nucleic Acids Res 18 (13), 3991 (1990) PUBMED 2374721 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CB654894.1, CB654895.1 and CI440940.1. On Mar 17, 2022 this sequence version replaced XM_015783766.1. ##Evidence-Data-START## Transcript exon combination :: CB654894.1, GQ848038.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-781 CB654894.1 1-781 782-1089 CB654895.1 397-704 c 1090-1442 CI440940.1 71-423 FEATURES Location/Qualifiers source 1..1442 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="5" /map="5" gene 1..1442 /gene="FBA1" /gene_synonym="cALD; FBA" /note="fructose-bisphosphate aldolase 1, cytoplasmic-like" /db_xref="GeneID:4338737" exon 1..213 /gene="FBA1" /gene_synonym="cALD; FBA" /inference="alignment:Splign:2.1.0" misc_feature 153..155 /gene="FBA1" /gene_synonym="cALD; FBA" /note="upstream in-frame stop codon" CDS 186..1262 /gene="FBA1" /gene_synonym="cALD; FBA" /EC_number="4.1.2.13" /note="fructose 1,6-bisphosphate aldolase; Gravity-specific protein GSC 233; LOC_Os05g33380; OSJNBa0035J16.18; OSJNBb0006J12.6; fructose-bisphosphate aldolase cytoplasmic isozyme; cytoplasmic aldolase" /codon_start=1 /product="fructose-bisphosphate aldolase 1, cytoplasmic" /protein_id="NP_001389453.1" /db_xref="GeneID:4338737" /translation="
MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLFCTPGALQYLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGTIEVAGTEKETTTQGHDDLGKRCAKYYEAGARFAKWRAVLKIGPNEPSQLAIDLNAQGLARYAIICQENGLVPIVEPEILVDGPHDIDRCAYVSEVVLAACYKALNEHHVLLEGTLLKPNMVTPGSDAKKVSPEVIAEYTVRTLQRTVPAAVPAIVFLSGGQSEEEATLNLNAMNKLSTKKPWSLSFSFGRALQQSTLKAWSGKAENIEKARAAFLTRCKANSEATLGTYKGDAVLGEGASESLHVKDYKY"
misc_feature 186..1259 /gene="FBA1" /gene_synonym="cALD; FBA" /note="fructose-bisphosphate aldolase; Region: PLN02455" /db_xref="CDD:178074" misc_feature order(273..281,288..290,492..494,609..611,615..617, 732..734,858..860,978..986,1068..1070,1074..1079) /gene="FBA1" /gene_synonym="cALD; FBA" /note="active site" /db_xref="CDD:188635" misc_feature order(501..503,654..656,663..668,675..677,687..689, 696..698,780..782,792..794,801..803,822..827,831..833, 843..845,939..944,948..950) /gene="FBA1" /gene_synonym="cALD; FBA" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:188635" misc_feature 858..860 /gene="FBA1" /gene_synonym="cALD; FBA" /note="catalytic residue [active]" /db_xref="CDD:188635" misc_feature 1257..1259 /gene="FBA1" /gene_synonym="cALD; FBA" /note="Necessary for preference for fructose 1,6-bisphosphate over fructose 1-phosphate. /evidence=ECO:0000250|UniProtKB:P00883; propagated from UniProtKB/Swiss-Prot (P17784.2); other site" exon 214..1442 /gene="FBA1" /gene_synonym="cALD; FBA" /inference="alignment:Splign:2.1.0" ORIGIN
ccctcctacaaggcggccggacgcccacagatcggatcgggtcatcaactcatcatcgccccccttcaaaaggccacccccctccccctcccttctcgcctcattccccacagccgccgcctccttcctctcctcgatctccctattcgtcgtagcctcctccctcgttcgctccgcccgcaaccatgtcggcctactgcggcaagtacaaggacgagctcatcaagaacgctgcctacattggcactcctggcaagggtatccttgctgcggatgagtccactggcaccattggcaagcgcttcgccagcatcaacgtcgagaacgttgaggagaaccgccgctccctccgcgagctcctcttctgcacccctggcgccctccagtacctcagcggcgtgatcctcttcgaggagaccctgtaccagaagaccaaggatggcaagcccttcgtcgatgtcctcaaggagggtggtgtcctcccgggcatcaaggtggacaagggcacaatcgaggttgccggcaccgagaaggagaccaccacccagggccatgatgaccttggcaagagatgcgccaagtactacgaggctggtgcccgcttcgccaagtggcgcgccgtcctcaagatcggccccaacgagccgtcgcagctcgccattgatctgaatgcgcagggcctcgctcgctacgccatcatctgccaggagaacgggctggtgccgatcgtcgagcccgagatccttgttgatggccctcacgacatcgaccgctgcgcctacgtctcggaggtggtcctcgctgcgtgctacaaggccctcaacgagcaccatgtcctcctcgagggtaccctcctcaagcccaacatggtcaccccaggctctgacgccaagaaggtgtctcccgaggtcatcgctgagtacaccgtccgcaccctccagaggaccgtccccgctgccgtgcccgccatcgtcttcctgtccggtgggcagagcgaggaggaggcgaccctgaacctcaacgccatgaacaagctcagcaccaagaagccgtggtcgctgtccttctccttcggccgtgccctccagcagagcacgctcaaggcctggtccggcaaggcggagaacattgagaaggccagggcggccttccttaccaggtgcaaggccaactccgaggctaccctcggtacatacaagggtgacgctgtcctcggcgagggcgcctccgagagccttcacgtcaaggactacaagtactgatttgccttgggaggtgctggctaccattggaacattctgcggctgttgcttaatgtggttttgatatctagagggcaatctatggttatctaaaatgtcttgtcgtaataattctggaacctttttgtgtaacacattaccaaatatcaattgcctggattgaaatatcgtttttatcag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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