2024-09-29 10:34:28, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001402434 2958 bp mRNA linear PLN 12-JUN-2024 DEFINITION Oryza sativa Japonica Group homeobox-leucine zipper protein ROC2-like (LOC4337074), transcript variant 3, mRNA. ACCESSION NM_001402434 XM_015780854 VERSION NM_001402434.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2958) AUTHORS Jantasuriyarat,C., Gowda,M., Haller,K., Hatfield,J., Lu,G., Stahlberg,E., Zhou,B., Li,H., Kim,H., Yu,Y., Dean,R.A., Wing,R.A., Soderlund,C. and Wang,G.L. TITLE Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction JOURNAL Plant Physiol 138 (1), 105-115 (2005) PUBMED 15888683 REFERENCE 2 (bases 1 to 2958) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI741430.1, AB101645.1, CB683722.1, AK065819.1 and CI036511.1. On Mar 14, 2022 this sequence version replaced XM_015780854.2. ##Evidence-Data-START## RNAseq introns :: mixed sample support SAMD00008650, SAMD00020319 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-166 CI741430.1 8-173 167-815 AB101645.1 418-1066 816-1316 CB683722.1 136-636 1317-1512 AB101645.1 1568-1763 1513-2568 AK065819.1 1061-2116 2569-2958 CI036511.1 134-523 FEATURES Location/Qualifiers source 1..2958 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="4" /map="4" gene 1..2958 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /note="homeobox-leucine zipper protein ROC2-like" /db_xref="GeneID:4337074" exon 1..92 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /inference="alignment:Splign:2.1.0" CDS 15..2360 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /note="isoform 2 is encoded by transcript variant 3; GLABRA 2-like homeobox protein 2; HD-ZIP protein ROC2; Homeodomain transcription factor ROC2; LOC_Os04g53540; OSJNBb0060E08.16; Protein RICE OUTERMOST CELL-SPECIFIC 2; GL2-type homeodomain protein; homeobox-leucine zipper protein ROC2" /codon_start=1 /product="homeobox-leucine zipper protein ROC2 isoform 2" /protein_id="NP_001389363.1" /db_xref="GeneID:4337074" /translation="
MERREIFQVADLAHILRGKPVDHLQQPNLLDNHQFQQAFQHQQQQHHLLDQIPATTAESGDNMIRSRASDPLGGDEFESKSGSENVDGVSVDDQDPNQRPRKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENSQLRSDNEKLRAENMRYKEALSSASCPNCGGPAALGEMSFDEHHLRIENARLREEIDRISAIAAKYVGKPMVPFPVLSNPMAAAASRAPLDLPVAPYGVPGDMFGGGGAGELLRGVQSEVDKPMIVELAVAAMEELVRMAQLDEPLWSVAPPLDATAAAMETLSEEEYARMFPRGLGPKQYGLRSEASRDSAVVIMTHANLVEILMDANQYAAVFSNIVSRAITLEVLSTGVAGNYNGALQVMSVEFQVPSPLVPTRESYFVRYCKQNADGTWAVVDVSLDSLRPSPVLKCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCERLASVMASNIPTSDIGVITSSEGRKSMLKLAERMVVSFCGGVTASVAHQWTTLSGSGAEDVRVMTRKSVDDPGRPPGIVLNAATSFWLPVPPKRVFDFLRDESSRSEWDILSNGGIVQEMAHIANGRDQGNCVSLLRVNSSNSNQSNMLILQESCTDASGSYVIYAPVDVVAMNVVLNGGDPDYVALLPSGFAILPDGPAHDGGDGDGGVGVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAVSGESNPQ"
misc_feature 318..488 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature <462..578 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /note="Cell division protein ZapB, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning]; Region: ZapB; COG3074" /db_xref="CDD:442308" misc_feature 873..1562 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /note="C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins; Region: START_ArGLABRA2_like; cd08875" /db_xref="CDD:176884" misc_feature order(957..962,1008..1010,1071..1073,1077..1079, 1110..1112,1122..1124,1134..1136,1143..1148,1161..1166, 1245..1247,1251..1262,1269..1271,1278..1280,1284..1286, 1290..1292,1338..1340,1380..1382,1386..1397,1401..1403, 1437..1439,1443..1445,1449..1451,1455..1457,1461..1463, 1467..1469,1485..1487,1491..1499,1503..1511,1518..1523, 1530..1532) /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /note="putative lipid binding site [chemical binding]; other site" /db_xref="CDD:176884" exon 93..367 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /inference="alignment:Splign:2.1.0" exon 368..485 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /inference="alignment:Splign:2.1.0" exon 486..674 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /inference="alignment:Splign:2.1.0" exon 675..1133 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /inference="alignment:Splign:2.1.0" exon 1134..1235 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /inference="alignment:Splign:2.1.0" exon 1236..1436 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /inference="alignment:Splign:2.1.0" exon 1437..1611 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /inference="alignment:Splign:2.1.0" exon 1612..1883 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /inference="alignment:Splign:2.1.0" exon 1884..1979 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /inference="alignment:Splign:2.1.0" exon 1980..2406 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /inference="alignment:Splign:2.1.0" exon 2407..2953 /gene="LOC4337074" /gene_synonym="GL2-2; Roc2" /inference="alignment:Splign:2.1.0" ORIGIN
agatagataggactatggagaggagggagattttccaagttgctgatcttgcacacatattgagagggaaacctgtagatcatcttcaacagccaaacttgctggataatcaccagttccagcaagcgttccagcatcagcagcagcagcatcatctccttgaccagatcccggcgacgacggcggagagcggcgacaacatgatccgcagccgtgcgtccgaccctctcggcggcgacgagttcgagagcaagtccggcagcgagaacgtcgacggcgtctccgtcgacgaccaggaccccaaccagcggccgcgcaagaagcgctaccaccgccacacccagcatcagatccaggagatggaagcattcttcaaggaatgtccacacccagatgataagcagcgcaaggagctgagccgggagctcggcctggagcctctccaagtgaagttctggttccagaacaagcgcacccaaatgaagaaccagcatgagaggcacgagaactcgcagctgcggtcggataacgagaagctccgggccgagaacatgcggtacaaggaggccctgagcagcgcctcctgccccaactgcggcggccccgccgccctcggcgagatgtccttcgacgagcaccacctccgcatcgagaacgcccgcctccgcgaagagatcgataggatatcggcgatcgcggcgaagtacgtggggaagccaatggtgccgttcccggtgctgtcgaacccgatggcggcggcggcgtcgcgggcgccgctggacctccccgtggcgccgtacggcgtgccgggcgacatgttcggcggcggtggcgccggggagctgctgcgcggggtgcagtcggaggtcgacaagccgatgatcgtggagctcgccgtggcggcgatggaggagctggtccgcatggcgcagctggacgagccgctctggagcgtcgcgccgccgctcgacgccacggcggcggcgatggagacgctcagcgaggaggagtacgcgcgcatgttcccccgagggctcggccccaagcagtacgggctcaggtcggaggcgtcccgcgacagcgccgtcgtcatcatgacgcacgccaacctcgtcgagatcctcatggacgcgaatcagtacgcggcagtgttctcgaacatcgtgtcgagggccatcacgctggaggtgctgtccaccggcgtcgcggggaactacaacggtgcattgcaagtgatgtcagtggagtttcaggtgccatcgccactggtgccaacgagagagagctacttcgtgagatactgcaagcagaacgcagacgggacatgggccgtcgtcgacgtctcgctggacagcctccgccctagccccgtcctcaaatgtcgccgccgtccgtcaggctgcctcatccaagaaatgcccaatggctactccaaggtgacgtgggtggagcatgtggaggtggacgacaggtcggtgcacaacatctacaagctgctggtgaactccgggctggcgttcggcgcgcggcggtgggtcggcacgctggaccgccagtgcgagcgcctcgccagcgtcatggccagcaacatccccaccagcgacatcggcgtgattacgagctcggaggggaggaagagcatgctgaagctggcggagaggatggtggtgagcttctgcggcggcgtgacggcgtcggtggcgcatcagtggacgacgctgtccggcagcggcgccgaggacgtccgcgtcatgacgaggaagagcgtcgacgaccccgggaggccccccggcatcgtcctcaacgccgccacctccttctggctccccgtccctcccaagcgcgtcttcgacttcctccgcgacgaatcctctcgcagtgagtgggacatcctctccaatggcggtatcgttcaagaaatggcccacatcgccaatggccgggatcagggcaactgcgtctcacttcttcgcgtcaacagctcgaactcgaaccagagcaacatgctgatcctgcaggagagctgcacggacgcgtcggggtcgtacgtcatctacgcgccggtggacgtggttgcgatgaacgtcgtgctaaacggcggcgacccggactacgtcgcgctgctgccatcgggcttcgccatcctgcccgatgggccggcgcacgacggtggcgacggcgacggcggcgtcggcgtcggctccggcgggtcgctgctgacggtggcgttccagatactggtggactccgtcccgacggcgaagctctcgctggggtcggtggcgacggtgaacagcctcatcgcctgcacggtggagcgcatcaaggcggccgtctccggcgagagcaatccgcagtagcttcgtccttgaatcaaacaaaagcttcttgtgctttcaatttcaggagcagcaaaattttggagctttcatcagtgggaagtcaagaacgcacctcagactgtccttgccatgtggtgcccatatatagtttggattatttttcgctagtttttccgcaaattcgggaaatttcaaaaaaaatgtgtcaccactacgcaagggcggttggttcgggtattgacttcctcttcatgttcgcctctcggatgctgctaccttatgaatttagggttcttctggagtacaaaaaaaaccccttaatttgatctgtaatttctgttgttcagacttcccagtacctagctagctagtaggagttgcagaatagagatctgtgtccctgtcttatacttttagttctcttcagtgtttgatcagtgctgtttcaatccaaaattgtgtgtgctgtgcttgttattagttcttccttgctgcttcaatgaaggcgatgttaatttcagtttccagcagttgcagagttgtgtaagatgacttgcatttcattgccttcaacagtattctatcagaactgtcgcatatcccccaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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