2024-09-29 10:37:08, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001402410 3107 bp mRNA linear PLN 02-APR-2024 DEFINITION Oryza sativa Japonica Group homeobox-leucine zipper protein ROC4-like (LOC4336705), mRNA. ACCESSION NM_001402410 VERSION NM_001402410.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3107) AUTHORS Wang,Z., Tian,X., Zhao,Q., Liu,Z., Li,X., Ren,Y., Tang,J., Fang,J., Xu,Q. and Bu,Q. TITLE The E3 Ligase DROUGHT HYPERSENSITIVE Negatively Regulates Cuticular Wax Biosynthesis by Promoting the Degradation of Transcription Factor ROC4 in Rice JOURNAL Plant Cell 30 (1), 228-244 (2018) PUBMED 29237723 REMARK GeneRIF: These results suggest a mechanism whereby DHS negatively regulates wax biosynthesis by promoting the degradation of ROC4.[DHS] REFERENCE 2 (bases 1 to 3107) AUTHORS Wei,J., Choi,H., Jin,P., Wu,Y., Yoon,J., Lee,Y.S., Quan,T. and An,G. TITLE GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7 JOURNAL Plant Sci 252, 133-143 (2016) PUBMED 27717449 REMARK GeneRIF: Roc4 is an LD-preferential flowering enhancer that functions downstream of phytochromes and OsGI, but upstream of Ghd7. REFERENCE 3 (bases 1 to 3107) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI304187.1, AB101647.1, AU092453.1, AK112099.1 and CI389626.1. ##Evidence-Data-START## Transcript exon combination :: AB101647.1 [ECO:0000332] RNAseq introns :: partial sample support SAMN04338665 [ECO:0000350] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-397 CI304187.1 1-397 398-1738 AB101647.1 264-1604 1739-1959 AU092453.1 96-316 1960-3068 AK112099.1 1942-3050 3069-3107 CI389626.1 427-465 FEATURES Location/Qualifiers source 1..3107 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="4" /map="4" gene 1..3107 /gene="LOC4336705" /gene_synonym="GL2-4; Roc4" /note="homeobox-leucine zipper protein ROC4-like" /db_xref="GeneID:4336705" exon 1..203 /gene="LOC4336705" /gene_synonym="GL2-4; Roc4" /inference="alignment:Splign:2.1.0" CDS 135..2576 /gene="LOC4336705" /gene_synonym="GL2-4; Roc4" /note="GL2-type homeodomain protein; HD-ZIP protein ROC4; Homeodomain transcription factor ROC4; LOC_Os04g48070; OSJNBb0032E06.7; Protein RICE OUTERMOST CELL-SPECIFIC 4; GLABRA 2-like homeobox protein 4" /codon_start=1 /product="homeobox-leucine zipper protein ROC4" /protein_id="NP_001389339.1" /db_xref="GeneID:4336705" /translation="
MQFPFSGAGPGVFTSSPALSLALADAVAGRNSGGGGKMVTAAHGGVGGGGGGGRAKARDALEVENEMSRSGSDHLDVVSCGDAGGGGGDDDDDEDAEHGNPPKRKKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMKMQLERHENSLLKQENDKLRSENLSIREATSNAVCVGCGGPAMLGEVSLEEHHLRVENARLKDELSRVCALAAKFLGKSISVMAPPQMHQPHPVPGSSLELAVGGIGSMPSATMPISTITDFAGAMSSSMGTVITPMKSEAEPSAMAGIDKSLFLELAMSAMDELVKMAQMGDPLWIPGASVPSSPAKESLNFEEYLNTFPPCIGVKPEGYVSEASRESGIVIIDDGAALVETLMDERRWSDMFSCMIAKASTTEEISTGVAGSRNGALLLVSDEHSVMQAELQVLSPLVPIREVKFLRFSKQLADGVWAVVDVSADELMRDQGITSASSTANMNCRRLPSGCVLQDTPNGFVKVTWVEHTEYDEASVHPLYRPLLRSGLALGAGRWIATLQRQCECLALLMSSIALPENDSSAIHPEGKRSMLKLARRMTDNFCAGVSTSSTREWSKLVGLTGNIGEDVHVMARKSVDEPGTPPGVVLSAATSVWMPVMPERLFNFLHNKGLRAEWDILSNGGPMQEVTSIAKGQQNGNTVCLLKASPTKDKQNSMLILQETCADASGSMVVYAPVDIPAMHLVMSGGDSSCVALLPSGFAILPAGPSIGADHKMGGSLLTVAFQILANSQPSAKLTVESVETVSNLISCTIKKIKTALHCDV"
misc_feature 318..470 /gene="LOC4336705" /gene_synonym="GL2-4; Roc4" /note="propagated from UniProtKB/Swiss-Prot (Q7Y0V9.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 447..614 /gene="LOC4336705" /gene_synonym="GL2-4; Roc4" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 1062..1799 /gene="LOC4336705" /gene_synonym="GL2-4; Roc4" /note="C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins; Region: START_ArGLABRA2_like; cd08875" /db_xref="CDD:176884" misc_feature order(1146..1151,1194..1196,1257..1259,1263..1265, 1299..1301,1311..1313,1323..1325,1332..1337,1350..1355, 1455..1457,1461..1472,1479..1481,1488..1490,1494..1496, 1500..1502,1548..1550,1617..1619,1623..1634,1638..1640, 1674..1676,1680..1682,1686..1688,1692..1694,1698..1700, 1704..1706,1722..1724,1728..1736,1740..1748,1755..1760, 1767..1769) /gene="LOC4336705" /gene_synonym="GL2-4; Roc4" /note="putative lipid binding site [chemical binding]; other site" /db_xref="CDD:176884" exon 204..496 /gene="LOC4336705" /gene_synonym="GL2-4; Roc4" /inference="alignment:Splign:2.1.0" exon 497..614 /gene="LOC4336705" /gene_synonym="GL2-4; Roc4" /inference="alignment:Splign:2.1.0" exon 615..1322 /gene="LOC4336705" /gene_synonym="GL2-4; Roc4" /inference="alignment:Splign:2.1.0" exon 1323..1445 /gene="LOC4336705" /gene_synonym="GL2-4; Roc4" /inference="alignment:Splign:2.1.0" exon 1446..1673 /gene="LOC4336705" /gene_synonym="GL2-4; Roc4" /inference="alignment:Splign:2.1.0" exon 1674..1851 /gene="LOC4336705" /gene_synonym="GL2-4; Roc4" /inference="alignment:Splign:2.1.0" exon 1852..2225 /gene="LOC4336705" /gene_synonym="GL2-4; Roc4" /inference="alignment:Splign:2.1.0" exon 2226..3107 /gene="LOC4336705" /gene_synonym="GL2-4; Roc4" /inference="alignment:Splign:2.1.0" ORIGIN
acgcactgctgctgctgctcgctctcgctttgcttcccctaatcttctcccgggccaggggggaagaggggcggaattcgggcacgagctttggagttggagatcacttcggcgacggcgtggtccccgccggcatgcagttcccgttctccggcgctggcccgggcgtcttcacgtcatcgccggcgctctccctcgcgctggcggacgcggtggcaggccggaacagcggcggcggtgggaagatggttaccgcggcccatggcggcgtcggcggaggaggaggaggaggacgcgcgaaggcgagggacgcgttggaggtggagaacgagatgagccggtccgggagcgaccacctcgacgtcgtctcttgcggcgacgcgggcggcggcggcggcgacgacgacgatgacgaggacgccgagcacggcaacccgcccaagcgcaagaagcggtaccaccgccacacgccgcagcagatccaagagctggaagcgatgttcaaggaatgcccccacccagacgagaagcagcgcgccgagctgagcaagcggctcggcctcgaaccccggcaggtcaagttctggttccagaatcggcgaacgcagatgaagatgcaactggagcgacacgagaactcgctgctgaagcaggagaacgataagctgcggtccgagaacctgtcaatccgggaggccacgagcaacgcggtgtgcgttggctgcggcggcccggcgatgctcggggaggtgtccctggaggagcaccaccttcgcgtcgagaacgcgaggctcaaggacgagctcagccgagtgtgcgcgctcgccgccaagttccttggcaagtccatctctgtcatggcgccaccgcagatgcatcagcctcatcctgtgccaggctcgtcgctggagcttgcggttgggggtatcggttcgatgccatcagccacgatgcccatctcgacgatcactgattttgctggcgccatgtccagttcaatgggcacggtgatcacgcccatgaagtctgaggctgaaccatcggcaatggctggcattgacaagtccttgttcttggagctagcaatgagtgcaatggatgagctagtcaagatggctcagatgggggatccgctatggattccaggtgcctccgtaccttcctcgccggcaaaggagagtctaaacttcgaggagtacctaaacaccttcccaccttgcatcggggtgaagcctgaagggtatgtatcagaggcatctagagaatctggcattgtcatcattgacgatggcgccgcgcttgtggagaccctcatggatgagcgacggtggtccgatatgttctcatgcatgattgccaaggcatcaaccactgaggagatttctactggtgttgctgggagtagaaatggtgcattgcttcttgtgagtgatgaacattctgttatgcaggcagagctacaggtgctttctcctcttgtgcctattagagaggtgaagtttctcaggttctccaaacagctggctgatggtgtatgggctgtagtggacgtttcggctgatgaattgatgagggatcagggcattacttctgcatcctcgactgcaaacatgaactgccgaaggctgccttctggttgtgtgctgcaggacactccaaatgggtttgttaaggtcacatgggttgaacatacagaatatgatgaggcatctgtgcacccgctctaccggcctcttctccggtctggtcttgcccttggtgcagggcgatggatcgcgacattacagcggcagtgcgaatgcttggcccttctcatgtcttctattgcattgccagagaacgactcatcagctatccatcctgaaggtaaacggagcatgttgaagttggcaaggaggatgacggacaacttctgtgcaggggtgagcacatcatctacccgtgaatggagcaaactggttggattgacaggcaacattggggaggatgtgcatgtaatggcgcggaagagtgtggatgaacctggaacgccgccaggtgtggtgcttagtgctgctacatctgtgtggatgcctgtgatgcctgaacggctcttcaacttcttgcacaacaaggggctgcgtgctgaatgggatatcctcagcaatggtggccctatgcaggaggtgacaagcattgccaaggggcaacagaatggcaataccgtatgtctactgaaggctagtcccaccaaagacaagcagaacagcatgctgatcctacaggagacgtgtgcagacgcatccggttcaatggttgtgtatgctcctgtagacatcccagcaatgcaccttgtcatgagtggtggggattcgtcatgcgtcgcccttcttccatcaggttttgccatcctgcctgctgggcctagcatcggcgcagatcacaagatgggcggttcattgctcaccgttgcattccagatacttgccaacagccagcccagtgctaagctcacggtggagtcagtcgagaccgtgagcaaccttatctcctgcaccatcaagaagatcaagacggcgctgcattgcgacgtgtgaacccaacaaggggggacttttggcctagtgggagcggctgtggcgatgagcctgagtcaagaacgaaccgcgacataggaagggacctttgctaggtggcaaggaccggacggggcaggtccttagcacagagcaatggtggtggttcgggtattgactcagcctctcccgcctccgttctctcctgtgactggtgcatgttgaagtgaacctgcattttggacgccatgtagcaggccatctttctttctttttcctttttctttttctttttctttttttagggagaagggagtcatctgtgttttttgttggctggctcagggtgttggtgtttctggtttctagcttttgttacagggagatgtgatacattttgtagaagctccgaattgtcgtgctggtatgtgaggttctgatcataggtctgtgtttgatagtctcgagctatcaacgcctggcaaatgcaaaccttgttatgctaaaatatgttttagatcaatctgattctgaaagctgtttacatgtccc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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