LOCUS       NM_001402408            1665 bp    mRNA    linear   PLN 15-JUL-2024
DEFINITION  Oryza sativa Japonica Group chaperone protein dnaJ A6-like
            (LOC4336584), transcript variant 2, mRNA.
ACCESSION   NM_001402408 XM_015780266
VERSION     NM_001402408.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1665)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AU181957.1, AK061922.1 and CF276800.1.
            
            On Mar 14, 2022 this sequence version replaced XM_015780266.2.
            
            ##Evidence-Data-START##
            CDS exon combination :: EU325987.1, AK061922.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMD00497392, SAMD00497393 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-467               AU181957.1         1-467
            468-1365            AK061922.1         322-1219
            1366-1665           CF276800.1         1-300               c
FEATURES             Location/Qualifiers
     source          1..1665
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
                     /map="4"
     gene            1..1665
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /note="chaperone protein dnaJ A6-like"
                     /db_xref="GeneID:4336584"
     exon            1..61
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /inference="alignment:Splign:2.1.0"
     exon            62..233
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    75..77
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /note="upstream in-frame stop codon"
     CDS             87..1337
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /note="DnaJ family heat shock protein; LOC_Os04g46390;
                     OSJNBb0034G17.1; dnaJ protein homolog 2"
                     /codon_start=1
                     /product="chaperone protein dnaJ A6"
                     /protein_id="NP_001389337.1"
                     /db_xref="GeneID:4336584"
                     /translation="

MFGRVPRSNNTKYYEVLGVPKTASKDELKKAYRKAAIKNHPDKGGDPEKFKELSQAYEVLTDPEKRDIYDQYGEDALKDGMGGGSDFHNPFDIFEQFFGGGAFGGSSSRVRRQRRGEDVAHTLKVSLEDVYNGSMKKLSLSRNILCPKCKGKGTKSEAPATCYGCHGVGMRNIMRQIGLGMIQHMQTVCPECRGSGEIISDRDKCTNCRASKVIQEKKVLEVHIEKGMQHGQKIVFQGEADEAPDTVTGDIVFILQVKVHPRFKRKYDDLFIERTISLTEALCGFQFILTHLDSRQLLIKANPGEIIKPGQHKAINDEGMPHHGRPFMKGRLFVEFNVEFPESGVLSRDQCRALEMILPPKPGHQLSDMDLDQCEETTMHDVNIEEEMRRKQYQRKQEAYDEDEEEDAPRVQCAQQ"

     misc_feature    111..1334
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /note="DnaJ_C chaperone protein; Provisional; Region:
                     PTZ00037"
                     /db_xref="CDD:240236"
     misc_feature    522..545
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0JB88.1);
                     Region: CXXCXGXG motif 1. /evidence=ECO:0000305"
     misc_feature    570..593
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0JB88.1);
                     Region: CXXCXGXG motif 2. /evidence=ECO:0000305"
     misc_feature    651..674
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0JB88.1);
                     Region: CXXCXGXG motif 3. /evidence=ECO:0000305"
     misc_feature    1224..1334
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0JB88.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            234..399
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /inference="alignment:Splign:2.1.0"
     exon            400..538
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /inference="alignment:Splign:2.1.0"
     exon            539..672
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /inference="alignment:Splign:2.1.0"
     exon            673..815
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /inference="alignment:Splign:2.1.0"
     exon            816..1014
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /inference="alignment:Splign:2.1.0"
     exon            1015..1653
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gacaccgctcgcctccgtccgcctcgcctccaccgagaggttctctctgccgccgattcagggagattatcttgtgatctgtaaacatgtttgggcgtgtaccgaggagtaacaacaccaagtactatgaggttcttggagttcctaaaactgcaagcaaggatgagctaaagaaggcataccggaaggctgccataaaaaaccatcctgacaagggaggggatccagaaaagtttaaagaattatcacaagcgtatgaggttctcactgatcctgagaagagagacatatatgaccaatatggggaggatgctcttaaggatggaatgggaggaggcagtgacttccataatccatttgacatatttgagcagtttttcgggggtggtgcctttggggggagtagctcaagagtacgcagacagagacgtggtgaagatgtggcgcatactttgaaggtgtctttagaagatgtgtataatggatctatgaagaaactatcattatcacgaaatattctgtgcccaaagtgcaaaggaaaagggaccaaatctgaggctccagcaacatgctatggttgtcatggtgtaggaatgaggaatataatgcgacagataggactaggcatgattcaacatatgcagactgtctgtcctgaatgcagaggatcaggtgagatcataagtgacagggataaatgcacaaactgcagagctagcaaagttattcaggagaaaaaggtgcttgaggttcatattgagaagggaatgcaacatggccaaaaaattgtattccaaggtgaagctgatgaagctcctgatacagtgacaggagatatagtatttatcttgcaagttaaggtacatccaagatttaagaggaaatatgatgacctgttcattgagcgcacaatctctttaactgaggcattgtgtgggttccaattcatcctcactcatctggacagtaggcagctcctaatcaaggcaaatcctggcgaaattattaaacctggtcaacacaaggccataaatgatgagggaatgccacaccatggccggcctttcatgaagggccgtctctttgtggaattcaatgttgagttccctgaatctggtgtactctcccgtgaccaatgccgggcacttgagatgatcctaccacctaaacctgggcaccaattatcagatatggacctggatcaatgtgaggaaactaccatgcatgatgtgaacatagaagaggagatgaggcgcaagcagtatcaaaggaagcaggaagcgtacgacgaagatgaggaggaggatgctccaagagtacagtgtgctcaacagtaagaagtgtcactttctggcgcaagtgatgatactccatgtaaactaagtagtttttggtgagactgttcattttagtgtattttgtactagttaaattaaatagtgaatgtctaagttgtgtcgtttgatatataagcttgtgctaacaacataaggctttcttggccttcataagatatactcctacctaggagaaagtggtggatgagcattcgtttctgtttttattggtaatgaacatatttacatgttgtattgactgaaaatggtatgctgaagggtcttcgatgcgtctctgtttgggatgctgagtacaaaaaaaaaaaaa

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