2024-09-29 10:31:36, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001402407 1703 bp mRNA linear PLN 17-FEB-2024 DEFINITION Oryza sativa Japonica Group chaperone protein dnaJ A6-like (LOC4336584), transcript variant 1, mRNA. ACCESSION NM_001402407 XM_015780265 VERSION NM_001402407.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1703) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI569435.1, AK061922.1 and CF276800.1. On Mar 14, 2022 this sequence version replaced XM_015780265.2. ##Evidence-Data-START## Transcript exon combination :: AK101956.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-208 CI569435.1 2-209 209-1403 AK061922.1 25-1219 1404-1703 CF276800.1 1-300 c FEATURES Location/Qualifiers source 1..1703 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="4" /map="4" gene 1..1703 /gene="LOC4336584" /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8" /note="chaperone protein dnaJ A6-like" /db_xref="GeneID:4336584" exon 1..91 /gene="LOC4336584" /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8" /inference="alignment:Splign:2.1.0" exon 92..271 /gene="LOC4336584" /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8" /inference="alignment:Splign:2.1.0" misc_feature 113..115 /gene="LOC4336584" /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8" /note="upstream in-frame stop codon" CDS 125..1375 /gene="LOC4336584" /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8" /note="DnaJ family heat shock protein; LOC_Os04g46390; OSJNBb0034G17.1; dnaJ protein homolog 2" /codon_start=1 /product="chaperone protein dnaJ A6" /protein_id="NP_001389336.1" /db_xref="GeneID:4336584" /translation="
MFGRVPRSNNTKYYEVLGVPKTASKDELKKAYRKAAIKNHPDKGGDPEKFKELSQAYEVLTDPEKRDIYDQYGEDALKDGMGGGSDFHNPFDIFEQFFGGGAFGGSSSRVRRQRRGEDVAHTLKVSLEDVYNGSMKKLSLSRNILCPKCKGKGTKSEAPATCYGCHGVGMRNIMRQIGLGMIQHMQTVCPECRGSGEIISDRDKCTNCRASKVIQEKKVLEVHIEKGMQHGQKIVFQGEADEAPDTVTGDIVFILQVKVHPRFKRKYDDLFIERTISLTEALCGFQFILTHLDSRQLLIKANPGEIIKPGQHKAINDEGMPHHGRPFMKGRLFVEFNVEFPESGVLSRDQCRALEMILPPKPGHQLSDMDLDQCEETTMHDVNIEEEMRRKQYQRKQEAYDEDEEEDAPRVQCAQQ"
misc_feature 149..1372 /gene="LOC4336584" /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8" /note="DnaJ_C chaperone protein; Provisional; Region: PTZ00037" /db_xref="CDD:240236" misc_feature 560..583 /gene="LOC4336584" /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8" /note="propagated from UniProtKB/Swiss-Prot (Q0JB88.1); Region: CXXCXGXG motif 1. /evidence=ECO:0000305" misc_feature 608..631 /gene="LOC4336584" /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8" /note="propagated from UniProtKB/Swiss-Prot (Q0JB88.1); Region: CXXCXGXG motif 2. /evidence=ECO:0000305" misc_feature 689..712 /gene="LOC4336584" /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8" /note="propagated from UniProtKB/Swiss-Prot (Q0JB88.1); Region: CXXCXGXG motif 3. /evidence=ECO:0000305" misc_feature 1262..1372 /gene="LOC4336584" /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8" /note="propagated from UniProtKB/Swiss-Prot (Q0JB88.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 272..437 /gene="LOC4336584" /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8" /inference="alignment:Splign:2.1.0" exon 438..576 /gene="LOC4336584" /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8" /inference="alignment:Splign:2.1.0" exon 577..710 /gene="LOC4336584" /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8" /inference="alignment:Splign:2.1.0" exon 711..853 /gene="LOC4336584" /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8" /inference="alignment:Splign:2.1.0" exon 854..1052 /gene="LOC4336584" /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8" /inference="alignment:Splign:2.1.0" exon 1053..1691 /gene="LOC4336584" /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8" /inference="alignment:Splign:2.1.0" ORIGIN
ctctctcggtcgcgtggcttgagcggtggtgacaccgctcgcctccgtccgcctcgcctccaccgagaggttctctctgccgccgattcagatttacagggagattatcttgtgatctgtaaacatgtttgggcgtgtaccgaggagtaacaacaccaagtactatgaggttcttggagttcctaaaactgcaagcaaggatgagctaaagaaggcataccggaaggctgccataaaaaaccatcctgacaagggaggggatccagaaaagtttaaagaattatcacaagcgtatgaggttctcactgatcctgagaagagagacatatatgaccaatatggggaggatgctcttaaggatggaatgggaggaggcagtgacttccataatccatttgacatatttgagcagtttttcgggggtggtgcctttggggggagtagctcaagagtacgcagacagagacgtggtgaagatgtggcgcatactttgaaggtgtctttagaagatgtgtataatggatctatgaagaaactatcattatcacgaaatattctgtgcccaaagtgcaaaggaaaagggaccaaatctgaggctccagcaacatgctatggttgtcatggtgtaggaatgaggaatataatgcgacagataggactaggcatgattcaacatatgcagactgtctgtcctgaatgcagaggatcaggtgagatcataagtgacagggataaatgcacaaactgcagagctagcaaagttattcaggagaaaaaggtgcttgaggttcatattgagaagggaatgcaacatggccaaaaaattgtattccaaggtgaagctgatgaagctcctgatacagtgacaggagatatagtatttatcttgcaagttaaggtacatccaagatttaagaggaaatatgatgacctgttcattgagcgcacaatctctttaactgaggcattgtgtgggttccaattcatcctcactcatctggacagtaggcagctcctaatcaaggcaaatcctggcgaaattattaaacctggtcaacacaaggccataaatgatgagggaatgccacaccatggccggcctttcatgaagggccgtctctttgtggaattcaatgttgagttccctgaatctggtgtactctcccgtgaccaatgccgggcacttgagatgatcctaccacctaaacctgggcaccaattatcagatatggacctggatcaatgtgaggaaactaccatgcatgatgtgaacatagaagaggagatgaggcgcaagcagtatcaaaggaagcaggaagcgtacgacgaagatgaggaggaggatgctccaagagtacagtgtgctcaacagtaagaagtgtcactttctggcgcaagtgatgatactccatgtaaactaagtagtttttggtgagactgttcattttagtgtattttgtactagttaaattaaatagtgaatgtctaagttgtgtcgtttgatatataagcttgtgctaacaacataaggctttcttggccttcataagatatactcctacctaggagaaagtggtggatgagcattcgtttctgtttttattggtaatgaacatatttacatgttgtattgactgaaaatggtatgctgaagggtcttcgatgcgtctctgtttgggatgctgagtacaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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