2024-09-29 10:21:26, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001402404 1237 bp mRNA linear PLN 02-JUN-2024 DEFINITION Oryza sativa Japonica Group homeobox-leucine zipper protein HOX22 (LOC4336542), mRNA. ACCESSION NM_001402404 XM_015778647 VERSION NM_001402404.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1237) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] REFERENCE 2 (bases 1 to 1237) AUTHORS Cooper,B., Clarke,J.D., Budworth,P., Kreps,J., Hutchison,D., Park,S., Guimil,S., Dunn,M., Luginbuhl,P., Ellero,C., Goff,S.A. and Glazebrook,J. TITLE A network of rice genes associated with stress response and seed development JOURNAL Proc Natl Acad Sci U S A 100 (8), 4945-4950 (2003) PUBMED 12684538 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI636321.1, AK109177.1 and AU057928.1. On Mar 13, 2022 this sequence version replaced XM_015778647.2. ##Evidence-Data-START## Transcript exon combination :: AK109177.1, AY224440.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-404 CI636321.1 1-404 405-929 AK109177.1 167-691 930-1237 AU057928.1 35-342 FEATURES Location/Qualifiers source 1..1237 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="4" /map="4" gene 1..1237 /gene="LOC4336542" /gene_synonym="Hox22; OsHox22; OsJ_014981" /note="homeobox-leucine zipper protein HOX22" /db_xref="GeneID:4336542" exon 1..493 /gene="LOC4336542" /gene_synonym="Hox22; OsHox22; OsJ_014981" /inference="alignment:Splign:2.1.0" CDS 8..838 /gene="LOC4336542" /gene_synonym="Hox22; OsHox22; OsJ_014981" /note="homeodomain leucine zipper protein-like protein; HD-ZIP protein HOX22; Homeodomain transcription factor HOX22; LOC_Os04g45810; OSJNBb0103I08.6" /codon_start=1 /product="homeobox-leucine zipper protein HOX22" /protein_id="NP_001389333.1" /db_xref="GeneID:4336542" /translation="
MNGRTQLASWARIAMDRGDHHHLQQQHQFLMPPPAPVVPPQLCMPAMMADEQYMDLGGGGAAAAPGRGGAGERKRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLREREERSGNGGAATTAASSSSCNGSGSEEVDDDDDKRNAAAGCLDLEPPESCVLGGATCATPADVSVESDQCDDQLDYDEGLFPESFCATPELWEPWPLVEWNAVA"
misc_feature 224..388 /gene="LOC4336542" /gene_synonym="Hox22; OsHox22; OsJ_014981" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 392..526 /gene="LOC4336542" /gene_synonym="Hox22; OsHox22; OsJ_014981" /note="propagated from UniProtKB/Swiss-Prot (Q7XUJ5.2); Region: Leucine-zipper" misc_feature 392..499 /gene="LOC4336542" /gene_synonym="Hox22; OsHox22; OsJ_014981" /note="Homeobox associated leucine zipper; Region: HALZ; pfam02183" /db_xref="CDD:460477" misc_feature 515..643 /gene="LOC4336542" /gene_synonym="Hox22; OsHox22; OsJ_014981" /note="propagated from UniProtKB/Swiss-Prot (Q7XUJ5.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 494..1223 /gene="LOC4336542" /gene_synonym="Hox22; OsHox22; OsJ_014981" /inference="alignment:Splign:2.1.0" ORIGIN
gagagggatgaatggtcgaacacagctagctagctgggctaggatcgccatggatcggggtgaccaccaccacctccagcagcagcaccagttcttgatgccaccgcctgcgccggtggtgccgccgcagctgtgcatgccggcgatgatggcggacgagcagtacatggacctgggcggtggcggggcggcggcggcgccggggaggggcggggccggggagaggaagcggcggttcacggaggagcagatacggtcgctggagtccatgttccacgcgcaccacgccaagctggagccccgcgagaaggcggagctggcgcgcgagctgggcctgcagccgcggcaggtggccatctggttccagaacaagcgcgcgcggtggcgctccaagcagctcgagcacgactacgccgcactccgctccaagtacgacgccctccactcccgcgtcgagtccctcaagcaagagaagctcgctctcaccgtccagttgcacgagctaagagagaggctgagggaacgggaggagaggagcggcaacggtggtgccgccacgacggcagcaagcagcagcagctgcaacggatcaggcagcgaggaggtcgacgacgacgacgacaagaggaacgccgccgcggggtgcctggacctcgagccgccggagagctgcgtgctcggcggcgcgacgtgcgccacgccggcggacgtgtcggtggagtcggatcagtgcgacgaccagcttgactacgatgagggcttgttcccggagtccttctgcgccacgccggagctgtgggagccatggccgctcgtcgagtggaatgcggtggcttgaaagacagagagtagtatattaccctaggttaatttgtgtgtacatgtagcttaaagtacgtggatcacgtctcctcgactgatctgccgtctcccttggacagagagggaaaagagggccgtggcaatgacgtgtggggccggtttgtagattggggttgcaagaggaatctcgttggagtagtggtggtggaaaccttggaagcaattaagccaatggactttgtgttttggatggtgctaaaatggagaaaactagatcgagctcattggaagagttgcataggaattcaagcatcttttgtggtcacttcgaattcggatttagtagtaatctattcgaaagatgttcaattgacgatattattaaactagttttatatctaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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