2024-09-29 10:21:50, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001402246 1682 bp mRNA linear PLN 12-JUN-2024 DEFINITION Oryza sativa Japonica Group homeobox protein knotted-1-like 6 (LOC4333973), transcript variant 2, mRNA. ACCESSION NM_001402246 XM_015773906 VERSION NM_001402246.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1682) AUTHORS Tsuda,K., Ito,Y., Sato,Y. and Kurata,N. TITLE Positive autoregulation of a KNOX gene is essential for shoot apical meristem maintenance in rice JOURNAL Plant Cell 23 (12), 4368-4381 (2011) PUBMED 22207572 REMARK GeneRIF: Positive autoregulation of OSH1 is essential for its expression and shoot apical meristem maintenance. REFERENCE 2 (bases 1 to 1682) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] REFERENCE 3 (bases 1 to 1682) AUTHORS Matsuoka,M., Ichikawa,H., Saito,A., Tada,Y., Fujimura,T. and Kano-Murakami,Y. TITLE Expression of a rice homeobox gene causes altered morphology of transgenic plants JOURNAL Plant Cell 5 (9), 1039-1048 (1993) PUBMED 8104574 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI761904.1 and FJ940206.1. On Mar 9, 2022 this sequence version replaced XM_015773906.1. ##Evidence-Data-START## Transcript exon combination :: FJ940206.1, D16507.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMN02716058 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-358 CI761904.1 1-358 359-1682 FJ940206.1 344-1667 FEATURES Location/Qualifiers source 1..1682 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="3" /map="3" gene 1..1682 /gene="LOC4333973" /gene_synonym="OSH1; Oskn1" /note="homeobox protein knotted-1-like 6" /db_xref="GeneID:4333973" exon 1..547 /gene="LOC4333973" /gene_synonym="OSH1; Oskn1" /inference="alignment:Splign:2.1.0" misc_feature 158..160 /gene="LOC4333973" /gene_synonym="OSH1; Oskn1" /note="upstream in-frame stop codon" CDS 170..1255 /gene="LOC4333973" /gene_synonym="OSH1; Oskn1" /note="KNOX class 1 homeodomain protein; Homeobox protein OSH1; Homeobox protein knotted-1-like 1; LOC_Os03g51690; OSJNBa0013A09.5" /codon_start=1 /product="homeobox protein knotted-1-like 6" /protein_id="NP_001389175.1" /db_xref="GeneID:4333973" /translation="
MEEISHHFGVVGASGVHGGHQHQHHHHPWGSSLSAIVAPPPPPQLQQQQTQAGGMAHTPLTLNTAAAAVGNPVLQLANGSLLDACGKAKEASASASYAADVEAIKAKIISHPHYSSLLAAYLDCQKVGAPPEVAARLTAVAQDLELRQRTALGVLGAATEPELDQFMEAYHEMLVKYREELTRPLQEAMEFLRRVETQLNTLSISGRSLRNILSSGSSEEDQEGSGGETELPEIDAHGVDQELKHHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQQLLNWWELHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSDEMQFVMMDGYHPTNAAAFYMDGHFINDGGLYRLG"
misc_feature 200..313 /gene="LOC4333973" /gene_synonym="OSH1; Oskn1" /note="propagated from UniProtKB/Swiss-Prot (P46609.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 476..595 /gene="LOC4333973" /gene_synonym="OSH1; Oskn1" /note="KNOX1 domain; Region: KNOX1; pfam03790" /db_xref="CDD:461051" misc_feature 650..778 /gene="LOC4333973" /gene_synonym="OSH1; Oskn1" /note="KNOX2 domain; Region: KNOX2; pfam03791" /db_xref="CDD:427506" misc_feature 893..958 /gene="LOC4333973" /gene_synonym="OSH1; Oskn1" /note="ELK domain; Region: ELK; pfam03789" /db_xref="CDD:427504" misc_feature 1016..1132 /gene="LOC4333973" /gene_synonym="OSH1; Oskn1" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 548..670 /gene="LOC4333973" /gene_synonym="OSH1; Oskn1" /inference="alignment:Splign:2.1.0" exon 671..815 /gene="LOC4333973" /gene_synonym="OSH1; Oskn1" /inference="alignment:Splign:2.1.0" exon 816..1048 /gene="LOC4333973" /gene_synonym="OSH1; Oskn1" /inference="alignment:Splign:2.1.0" exon 1049..1664 /gene="LOC4333973" /gene_synonym="OSH1; Oskn1" /inference="alignment:Splign:2.1.0" ORIGIN
ggttcttcctttttcctctttctcttcgtccaagaacttcacctcaatagctcgagctacggcctaacttttgcgttgcgcaggagagctcgatcgctgcaccaatacttcactggagatcgcctagctgcagctagctagcttatcctgcgtgtcttgagcttctctcatggaggagatctcccaccacttcggggtcgtcggagccagcggcgtccatggcggccaccagcatcagcatcaccaccacccgtggggttcttccctgagcgccatcgtcgcgccgccgccgccgccgcagctgcagcagcagcagacgcaggccggcggcatggcgcacacgccgctcacgctgaacacggcggcggcggcggtcggcaacccggtgctgcagctggcgaacggcagcctgctcgacgcgtgcggcaaggcgaaggaggcgtcggcgtcggcgtcgtacgccgccgacgtggaggccatcaaggccaagatcatctcccacccccactactcctccctcctcgccgcctacctcgactgccagaaggttggggcgccgccggaggtggcggcgaggctgacggcggtggcgcaggacctggagcttcgccagcgcacggcgctcggcgtcctcggcgccgccacggagccggagctggaccagttcatggaggcgtaccacgagatgctggtgaagtacagggaggagctgacgaggccgctgcaggaggccatggagttcttgaggagggtggagacgcagctcaacacgctctccatctccggcagatcgcttcgcaatatcctttcctccggctcttctgaggaggaccaagaaggtagcggaggagagacagagctacctgagattgatgcacatggtgtggatcaggagctcaagcaccatttgctgaagaagtacagtggatacctgagctccctgaagcaagaactgtcaaagaagaagaaaaaagggaagctccccaaggatgctcgtcaacagctcctcaactggtgggagctgcactacaaatggccttacccctcggagagtcagaaggtggcactggcggagtcgacggggctggacctgaagcagatcaacaactggttcatcaaccagaggaagcggcactggaagccctccgacgagatgcagttcgtgatgatggacggctaccacccgaccaacgccgccgccttctacatggacggccacttcatcaacgacggcggcctctacaggctcggctagctagctagcctactccttatccccagctaccatgacctagatcgatctcgaccccaaatcaatggtcgctaagctactgaaaagtttgtgatgagaattgaagaacctaggttagtcttcctggtaatttgatgctcgcgcgtacgcacgccatggatggctgcgtgcttattttgtttcttgccgcaatatgtaatgcaattgccttagctaatgcatcaactcgggtcggttttagctgctgctgctgcgccacaatgaggtggttgtggttatgcttttgtgtggtttaatacgccaagacgtacacattgcttcgaaatgtcgctactcttgctgctgctaattaagtgcgtgtttgaataattcggatctatatactacctggttaattcctatcttctgattaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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