2024-09-29 10:25:08, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001402083 2138 bp mRNA linear PLN 08-APR-2024 DEFINITION Oryza sativa Japonica Group inositol-3-phosphate synthase 1-like (LOC4331917), transcript variant 1, mRNA. ACCESSION NM_001402083 XM_015776951 VERSION NM_001402083.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2138) AUTHORS Perera,I., Fukushima,A., Akabane,T., Horiguchi,G., Seneweera,S. and Hirotsu,N. TITLE Expression regulation of myo-inositol 3-phosphate synthase 1 (INO1) in determination of phytic acid accumulation in rice grain JOURNAL Sci Rep 9 (1), 14866 (2019) PUBMED 31619750 REMARK GeneRIF: Expression regulation of myo-inositol 3-phosphate synthase 1 (INO1) in determination of phytic acid accumulation in rice grain. Publication Status: Online-Only REFERENCE 2 (bases 1 to 2138) AUTHORS Jantasuriyarat,C., Gowda,M., Haller,K., Hatfield,J., Lu,G., Stahlberg,E., Zhou,B., Li,H., Kim,H., Yu,Y., Dean,R.A., Wing,R.A., Soderlund,C. and Wang,G.L. TITLE Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction JOURNAL Plant Physiol 138 (1), 105-115 (2005) PUBMED 15888683 REFERENCE 3 (bases 1 to 2138) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] REFERENCE 4 (bases 1 to 2138) AUTHORS Yoshida,K.T., Wada,T., Koyama,H., Mizobuchi-Fukuoka,R. and Naito,S. TITLE Temporal and spatial patterns of accumulation of the transcript of Myo-inositol-1-phosphate synthase and phytin-containing particles during seed development in rice JOURNAL Plant Physiol 119 (1), 65-72 (1999) PUBMED 9880347 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI309041.1, AK058750.1, CB682609.1, CB682610.1 and CI115682.1. On Mar 5, 2022 this sequence version replaced XM_015776951.1. ##Evidence-Data-START## Transcript exon combination :: EU267961.1, AK058750.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN02716058, SAMN03003175 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-467 CI309041.1 1-467 468-898 AK058750.1 326-756 899-1273 CB682609.1 1-375 1274-1899 CB682610.1 210-835 c 1900-2138 CI115682.1 259-497 FEATURES Location/Qualifiers source 1..2138 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="3" /map="3" gene 1..2138 /gene="LOC4331917" /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1" /note="inositol-3-phosphate synthase 1-like" /db_xref="GeneID:4331917" exon 1..442 /gene="LOC4331917" /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1" /inference="alignment:Splign:2.1.0" misc_feature 156..158 /gene="LOC4331917" /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1" /note="upstream in-frame stop codon" CDS 255..1787 /gene="LOC4331917" /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1" /EC_number="5.5.1.4" /note="isoform 1 is encoded by transcript variant 1; myo-inositol phosphate synthase; LOC_Os03g09250; MIP synthase 1; inositol-3-phosphate synthase 1; MI-1-P synthase; Myo-inositol 1-phosphate synthase" /codon_start=1 /product="inositol-3-phosphate synthase 1 isoform 1" /protein_id="NP_001389012.1" /db_xref="GeneID:4331917" /translation="
MFIESFRVESPHVRYGAAEIESDYQYDTTELVHESHDGASRWIVRPKSVRYNFRTTTTVPKLGVMLVGWGGNNGSTLTAGVIANREGISWATKDKVQQANYYGSLTQASTIRVGSYNGEEIYAPFKSLLPMVNPDDLVFGGWDISNMNLADAMTRAKVLDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKGTKKEQMEQIIKDIREFKEKSKVDKVVVLWTANTERYSNVCVGLNDTMENLLASVDKNEAEISPSTLYAIACVMEGIPFINGSPQNTFVPGLIDLAIKNNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNAILYELGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKSTIVLHNTCEDSLLAAPIILDLVLLAELSTRIQLKAEGEEKFHSFHPVATILSYLTKAPLVPPGTPVVNALAKQRAMLENIMRACVGLAPENNMILEYK"
misc_feature 255..1784 /gene="LOC4331917" /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1" /note="inositol-3-phosphate synthase; Region: PLN02438" /db_xref="CDD:178057" exon 443..511 /gene="LOC4331917" /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1" /inference="alignment:Splign:2.1.0" exon 512..647 /gene="LOC4331917" /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1" /inference="alignment:Splign:2.1.0" exon 648..895 /gene="LOC4331917" /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1" /inference="alignment:Splign:2.1.0" exon 896..1122 /gene="LOC4331917" /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1" /inference="alignment:Splign:2.1.0" exon 1123..1238 /gene="LOC4331917" /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1" /inference="alignment:Splign:2.1.0" exon 1239..1415 /gene="LOC4331917" /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1" /inference="alignment:Splign:2.1.0" exon 1416..1604 /gene="LOC4331917" /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1" /inference="alignment:Splign:2.1.0" exon 1605..1667 /gene="LOC4331917" /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1" /inference="alignment:Splign:2.1.0" exon 1668..2138 /gene="LOC4331917" /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1" /inference="alignment:Splign:2.1.0" ORIGIN
attgcgctcccaccggcggccggagtcgtctcccaatccgacccaaggtggggaccaccctcctgctcggtgggcccgagcagcccggccaagtggccgccgaaacccgctataaatcccccacgctccaccagcctccgattccacagcctacctagcttctccttctcgctcgcttcgcccgcataagtctagccacaaacccgccgccgccgccgccgccgccgccgctagcttccgcggagcggggcgagatgttcatcgagagcttccgcgtggagagcccgcacgtgcggtacggcgcggcggagatcgagtcggactaccagtacgacacgacggagctggtgcacgagagccacgacggcgcctcccgctggatcgtccgccccaagtccgtccgctacaacttccggaccaccaccaccgtccccaagctcggggtgatgctcgtggggtggggcggcaacaacggctcaacgctgacggctggggtcatcgccaacagggagggaatctcatgggcgaccaaggacaaggtgcagcaagccaactactatggctcactcacccaggcgtccaccatcagggtcgggagctacaacggggaggagatctacgcgcccttcaagagcctcctgcccatggtgaaccctgatgaccttgtgttcgggggctgggacattagcaacatgaacctggctgatgctatgaccagggcaaaggtacttgacattgatctgcagaagcagctcagaccttacatggagtccatggtgcctctccccggcatctatgaccccgacttcatcgccgccaaccagggatcccgcgcgaacaatgtcatcaagggcaccaagaaggagcagatggagcagatcatcaaggacatcagggagttcaaggaaaagagcaaagtggacaaggtggtggtgttgtggactgcaaacactgaaaggtacagcaatgtctgtgttgggctcaatgacacaatggagaacctcctggcgtctgtggacaagaacgaggcggagatatcaccatcgacactgtatgccattgcctgcgtcatggagggtataccgttcattaacgggagtcctcagaacacctttgtgcctgggctgatcgatcttgctattaagaacaactgcctgattggtggtgatgatttcaagagtggacagacaaagatgaagtctgtcttggttgatttcctagttggtgctggaataaagcccacctcaattgtcagctacaaccacttggggaataatgatggcatgaacctttccgcacctcaaacattccgatccaaggagatctccaagagcaatgtggtcgatgacatggtctcaagcaatgccatcctctatgagcttggcgagcatcctgatcatgttgttgtgatcaagtatgtgccgtatgttggagacagcaagagggcaatggacgagtacacctcagagatcttcatggggggtaagagcaccatcgttctgcacaacacctgtgaggactcactccttgccgcgccgatcattcttgatctggtgctccttgccgagctcagcaccaggattcagctgaaagccgagggggaggagaagttccattccttccatccagtggctaccatcctgagctacctcaccaaggcaccccttgttcctcctggcacaccagtggtgaacgccctggcaaagcagagggcaatgcttgagaacatcatgagggcctgcgttgggctggcccccgagaacaacatgatcctggagtacaagtgagggaggctgccgaggccgagcagccgtggcatgtggcaaagaggcgaatgggatggagcaagaaagacgtgattagctagctctaagaattgttttagcttctcttgtgatttttcggtctttcccattcttaaccttctgtgctttgtgtgagactcttatcgggctatgcaactagcagcagccttactatggtactggatgatgttatggagaatgttagctagttcccctctatttataacttattagtatcggagatttcagttcatcgctgactttgtgctgagcgttttattattttctcgccttgtaacataaccaattcccccttctctgttgtgtgctaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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