2024-09-29 10:22:33, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001402067 1610 bp mRNA linear PLN 17-FEB-2024 DEFINITION Oryza sativa Japonica Group homeobox-leucine zipper protein HOX13-like (LOC4331890), transcript variant 1, mRNA. ACCESSION NM_001402067 XM_015772797 VERSION NM_001402067.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1610) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI770387.1, AK101522.1 and CI222005.1. On Mar 5, 2022 this sequence version replaced XM_015772797.2. ##Evidence-Data-START## Transcript exon combination :: AK105644.1, AK101522.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-271 CI770387.1 2-272 272-1036 AK101522.1 269-1033 1037-1610 CI222005.1 1-574 FEATURES Location/Qualifiers source 1..1610 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="3" /map="3" gene 1..1610 /gene="LOC4331890" /gene_synonym="Hox13; OJ1217B09.11; OsHox13" /note="homeobox-leucine zipper protein HOX13-like" /db_xref="GeneID:4331890" exon 1..332 /gene="LOC4331890" /gene_synonym="Hox13; OJ1217B09.11; OsHox13" /inference="alignment:Splign:2.1.0" misc_feature 284..286 /gene="LOC4331890" /gene_synonym="Hox13; OJ1217B09.11; OsHox13" /note="upstream in-frame stop codon" CDS 290..1225 /gene="LOC4331890" /gene_synonym="Hox13; OJ1217B09.11; OsHox13" /note="isoform 1 is encoded by transcript variant 1; HD-ZIP protein HOX13; Homeodomain transcription factor HOX13; LOC_Os03g08960; homeobox-leucine zipper protein HOX13" /codon_start=1 /product="homeobox-leucine zipper protein HOX13 isoform 1" /protein_id="NP_001388996.1" /db_xref="GeneID:4331890" /translation="
MKRPTSSSRKSKKQGEDLAFSEEGSLPAVTMEQKDEAEMEEVDEEEEEEVDEDMAGGHAAQSPSPSCGLGEKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRARHDALRADCDALRRDKDALAAEIRELREKLPTKPADTAASVKVEAGNDAAAGAAAATVCKDGSSDDSDSSVVFNDEASPYSGAAFIGFGPSFLVDDASAATVGCSSSLPALESKWHGPYSDDSCKGGVYGFTEEWLAACSGEMAGNDAAGFFSDEHASNLNFGWCASGNEGWE"
misc_feature 290..511 /gene="LOC4331890" /gene_synonym="Hox13; OJ1217B09.11; OsHox13" /note="propagated from UniProtKB/Swiss-Prot (Q10QP3.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 503..664 /gene="LOC4331890" /gene_synonym="Hox13; OJ1217B09.11; OsHox13" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 668..802 /gene="LOC4331890" /gene_synonym="Hox13; OJ1217B09.11; OsHox13" /note="propagated from UniProtKB/Swiss-Prot (Q10QP3.1); Region: Leucine-zipper" misc_feature 668..793 /gene="LOC4331890" /gene_synonym="Hox13; OJ1217B09.11; OsHox13" /note="Homeobox associated leucine zipper; Region: HALZ; pfam02183" /db_xref="CDD:460477" exon 333..769 /gene="LOC4331890" /gene_synonym="Hox13; OJ1217B09.11; OsHox13" /inference="alignment:Splign:2.1.0" exon 770..1610 /gene="LOC4331890" /gene_synonym="Hox13; OJ1217B09.11; OsHox13" /inference="alignment:Splign:2.1.0" ORIGIN
agctgtttgccccgtccactgacctctctctctgctctccgcctctcacctccgtcctccaaaggacgaatcggcactctgcccagttcatctccacgatcactgctcgattctcgaagcaggggaggccattgccaccgaccaacaaaagttgaaggggtacacacatctgcatgcaatttctgtcctctggttgctagctgccgcttctttcaagtttcaacactccttgcaaccctccactcgtaggatcatctccatttccaatcctccttcagttttgtaaataatgaagaggcccaccagcagcagccgaaaatccaaaaaacaaggagaggacctggcgttctctgaggagggcagcttgcccgcggtgaccatggagcagaaagatgaagccgagatggaggaggtggacgaggaggaggaggaggaggtcgacgaagacatggccggcgggcacgcggcgcagtcgccgtcgccgtcgtgcgggctgggcgagaagaagcggcggctggcgctggagcaggtgcgcgctctggagcggagcttcgacacggacaacaagctggacccggaccgcaaggcccgcatcgcgcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcccggtggaagacgaagcagctcgagcgcgacttcgccgccctccgcgcccgccacgacgccctccgcgccgactgcgacgccctgcgccgcgacaaggacgccctcgccgccgagattcgggagctgagggagaagctgcccaccaagccggcggacacggcggcatcggtgaaggtagaagccggcaatgacgcggcggccggcgccgcggccgccacggtgtgcaaggacggctcgtcggacgacagcgactccagcgtggtgttcaacgacgaggcgtcgccgtactccggcgcggccttcattggattcggcccgtcgttcttggtcgacgacgcgtcggcggcaaccgtgggctgctcgtcgtcgctccccgcgctcgagtccaaatggcacggtccgtactccgacgactcgtgcaaaggcggcgtctatggcttcacggaggaatggctcgctgcctgctccggcgagatggccggcaacgacgccgccggcttcttctccgacgagcacgcctccaacctcaacttcggttggtgcgcgagtggtaacgagggttgggaatgagattttgatctccacggttagtgtaaaaaatggcagggttagtagcactgtgcataaccgcattggcgcattgcatgcttggatggagcacgtacttttagtttttttactgtactcatttactaccgcctttggctacctggcgtgcttactgctagtactgtagcaaagtagcaagaagtggaacgagcctagaggacgaaattgatatagggtaattaacgaaggatcaaggatgtaaattttaagccgccaaggggtcgaagaaggatagcacaggacagcaaagcatagctgtctgcgttttactacctgtggtatatatatcatactagtatattataaagcattacataatagaaaaaaaaagacataatgccacatg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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