2024-09-29 10:30:29, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001401995 1634 bp mRNA linear PLN 12-JUN-2024 DEFINITION Oryza sativa Japonica Group 26S proteasome regulatory subunit 6A homolog (LOC4331050), mRNA. ACCESSION NM_001401995 XM_015769665 VERSION NM_001401995.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1634) AUTHORS Jantasuriyarat,C., Gowda,M., Haller,K., Hatfield,J., Lu,G., Stahlberg,E., Zhou,B., Li,H., Kim,H., Yu,Y., Dean,R.A., Wing,R.A., Soderlund,C. and Wang,G.L. TITLE Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction JOURNAL Plant Physiol 138 (1), 105-115 (2005) PUBMED 15888683 REFERENCE 2 (bases 1 to 1634) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CF310207.1, CB679656.1, CB679657.1 and CI332290.1. On Mar 3, 2022 this sequence version replaced XM_015769665.2. ##Evidence-Data-START## Transcript exon combination :: AB037155.1, AK062185.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03003383 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-501 CF310207.1 2-502 502-855 CB679656.1 451-804 856-1446 CB679657.1 59-649 c 1447-1634 CI332290.1 282-469 FEATURES Location/Qualifiers source 1..1634 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="2" /map="2" gene 1..1634 /gene="LOC4331050" /gene_synonym="OsRPT5a; TBP-1; TBP1" /note="26S proteasome regulatory subunit 6A homolog" /db_xref="GeneID:4331050" exon 1..207 /gene="LOC4331050" /gene_synonym="OsRPT5a; TBP-1; TBP1" /inference="alignment:Splign:2.1.0" CDS 73..1362 /gene="LOC4331050" /gene_synonym="OsRPT5a; TBP-1; TBP1" /note="P0689B12.30-2; putative 26S proteasome regulatory particle triple-A ATPase subunit5a; rice homologue of Tat binding protein; LOC_Os02g56000; Tat-binding protein homolog 1; 26S protease regulatory subunit 6A homolog" /codon_start=1 /product="26S proteasome regulatory subunit 6A homolog" /protein_id="NP_001388924.1" /db_xref="GeneID:4331050" /translation="
MSSPPPAAAAAMAVDDADDDQLASMSTEDIVRATRLLDNETRVLKDELQRTNLEVESYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVIGLVDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYYA"
misc_feature 73..135 /gene="LOC4331050" /gene_synonym="OsRPT5a; TBP-1; TBP1" /note="propagated from UniProtKB/Swiss-Prot (P46465.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 181..1344 /gene="LOC4331050" /gene_synonym="OsRPT5a; TBP-1; TBP1" /note="proteasome-activating nucleotidase; Provisional; Region: PRK03992" /db_xref="CDD:179699" exon 208..324 /gene="LOC4331050" /gene_synonym="OsRPT5a; TBP-1; TBP1" /inference="alignment:Splign:2.1.0" exon 325..432 /gene="LOC4331050" /gene_synonym="OsRPT5a; TBP-1; TBP1" /inference="alignment:Splign:2.1.0" exon 433..624 /gene="LOC4331050" /gene_synonym="OsRPT5a; TBP-1; TBP1" /inference="alignment:Splign:2.1.0" exon 625..816 /gene="LOC4331050" /gene_synonym="OsRPT5a; TBP-1; TBP1" /inference="alignment:Splign:2.1.0" exon 817..935 /gene="LOC4331050" /gene_synonym="OsRPT5a; TBP-1; TBP1" /inference="alignment:Splign:2.1.0" exon 936..1023 /gene="LOC4331050" /gene_synonym="OsRPT5a; TBP-1; TBP1" /inference="alignment:Splign:2.1.0" exon 1024..1143 /gene="LOC4331050" /gene_synonym="OsRPT5a; TBP-1; TBP1" /inference="alignment:Splign:2.1.0" exon 1144..1284 /gene="LOC4331050" /gene_synonym="OsRPT5a; TBP-1; TBP1" /inference="alignment:Splign:2.1.0" exon 1285..1634 /gene="LOC4331050" /gene_synonym="OsRPT5a; TBP-1; TBP1" /inference="alignment:Splign:2.1.0" ORIGIN
aactacagtaaactgaccaacgcaaaccgcatcgatcaactccttccccaagtcgaagcaaaatccctagcgatgtcgtcgccgccgcccgccgccgccgccgcgatggccgtcgacgacgccgacgacgaccagctcgcctccatgtccacggaggacatcgtcagggcaacccgcctcctcgacaacgagacccgcgtcctcaaggatgagctgcagcggacgaaccttgaggtggaatcctacaaggagaagatcaaggagaaccaggagaagatcaaactcaacaagcagctgccttaccttgtcggcaacatcgtcgagatattggaaatgaaccccgaggatgaggctgaagaggatggtgcgaacatcgatctggattcacaaaggaaaggaaaatgcgttgttttgaagacatccacaagacaaacaatattccttcctgtaatcgggcttgttgaccctgaaaagctcaagcctggggatttggttggagtcaacaaagacagctacttgatactagacacgctaccttcagaatatgattcacgggttaaggcaatggaggtagatgaaaagcctacagaggattacaatgacattggtggccttgagaaacagattcaagagcttgttgaagcaatagtattgcccatgactcacaaggaccggtttcagaagttgggaattcgccccccgaaaggtgttcttttgtacggaccacctggcactggaaagaccctaatggctcgtgcatgtgctgcccaaactaacgccacatttctgaaacttgctggtccacagcttgtccagatgttcatcggtgatggtgcaaagcttgtccgtgatgcctttcagcttgcaaaggagaaatccccctgcatcatttttattgatgaaattgacgcaattggaacaaagcgttttgatagtgaagttagtggtgacagagaagtgcagcgcacaatgttggagttgctgaatcagctagatggattcagtagtgacgagaggataaaggtgatagctgcaactaatcgcgcggacattcttgatcctgctttgatgaggtctggtaggctggaccgaaaaattgagttccctcatccatccgaagaagcacgagctagaattttgcaaatccattcaagaaaaatgaatgtaaaccctgatgtcaactttgaagagttggcacgatctacggacgacttcaatggtgcacaactgaaggccgtttgtgtagaagcaggcatgcttgccctacgccgagatgctacagaggtgacacacgaggatttcaatgaagggatcatacaagtgcaagccaaaaagaagtccagtttaaattattacgcttaattcttccgagagagttattaggcctaaggaaacgctccgtccaaaattgtttgtttgtaacactaccgttttatatatttgtgtggttcaagatgtgattgtacgaaacatgtcttgcgctgttccttctctgcttgatatatactgatagaagttgactcgtcccttgcgtaattgcgttcacgtgtgtttggcttcttgcgtgtcaaaactggcaattcgaatactggacgatttaggattactcggctggcattgatgcttccttggat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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