LOCUS       NM_001401964            2044 bp    mRNA    linear   PLN 12-JUN-2024
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX16-like (LOC4330610), transcript variant 2, mRNA.
ACCESSION   NM_001401964 XM_015770768
VERSION     NM_001401964.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Jantasuriyarat,C., Gowda,M., Haller,K., Hatfield,J., Lu,G.,
            Stahlberg,E., Zhou,B., Li,H., Kim,H., Yu,Y., Dean,R.A., Wing,R.A.,
            Soderlund,C. and Wang,G.L.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI299509.1, CB655904.1, AY559045.1, AK058364.1 and CI131573.1.
            
            On Mar 3, 2022 this sequence version replaced XM_015770768.2.
            
            ##Evidence-Data-START##
            CDS exon combination :: BP184810.1, BP184502.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMD00008650, SAMD00020310 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-315               CI299509.1         1-315
            316-814             CB655904.1         296-794
            815-1280            AY559045.1         398-863
            1281-1544           AK058364.1         778-1041
            1545-2044           CI131573.1         1-500
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="2"
                     /map="2"
     gene            1..2044
                     /gene="LOC4330610"
                     /gene_synonym="Hox16; OsHox16; OsJ_007974; P0617A09.3"
                     /note="homeobox-leucine zipper protein HOX16-like"
                     /db_xref="GeneID:4330610"
     exon            1..655
                     /gene="LOC4330610"
                     /gene_synonym="Hox16; OsHox16; OsJ_007974; P0617A09.3"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    492..494
                     /gene="LOC4330610"
                     /gene_synonym="Hox16; OsHox16; OsJ_007974; P0617A09.3"
                     /note="upstream in-frame stop codon"
     exon            656..803
                     /gene="LOC4330610"
                     /gene_synonym="Hox16; OsHox16; OsJ_007974; P0617A09.3"
                     /inference="alignment:Splign:2.1.0"
     CDS             684..1580
                     /gene="LOC4330610"
                     /gene_synonym="Hox16; OsHox16; OsJ_007974; P0617A09.3"
                     /note="isoform 2 is encoded by transcript variant 2;
                     putative homeodomain leucine zipper protein;
                     OSJNBa0072H09.24; LOC_Os02g49700; HD-ZIP protein HOX16;
                     homeodomain leucine zipper protein 16; Homeodomain
                     transcription factor HOX16; homeobox-leucine zipper
                     protein HOX16"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX16 isoform 2"
                     /protein_id="NP_001388893.1"
                     /db_xref="GeneID:4330610"
                     /translation="

MEEGGRGVKRPFFTTPDELLEEEYYDEQLPEKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEKETTTEGSAGAAVDVPGLPAAADVKVAVPDAEEPALEEAAAAFEEQQEQQVKAEDRLSTGSGGSAVVDTDAQLVVGCGRQHLAAVDSSVESYFPGGDEYHDCVMGPMDHAAGGIQSEEDDGAGSDEGCSYYADDAGVLFADHGHHHHHQHADDDEEDGQQISCWWMWN"

     misc_feature    777..938
                     /gene="LOC4330610"
                     /gene_synonym="Hox16; OsHox16; OsJ_007974; P0617A09.3"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    942..1067
                     /gene="LOC4330610"
                     /gene_synonym="Hox16; OsHox16; OsJ_007974; P0617A09.3"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:460477"
     exon            804..1043
                     /gene="LOC4330610"
                     /gene_synonym="Hox16; OsHox16; OsJ_007974; P0617A09.3"
                     /inference="alignment:Splign:2.1.0"
     exon            1044..2039
                     /gene="LOC4330610"
                     /gene_synonym="Hox16; OsHox16; OsJ_007974; P0617A09.3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

tagcttcagagccctccaaaagaaaaaaatattataggaaataaaaaataatttcctggttagaataaacacatttttaaaaaaaccaagaaaagattttcctcttctgttacattccttcttccttctccggccaccggagccgtagccgaattgtgcctcttctccggcgaggggagagggagagagggggtgtgagttttgctccttccggcgagtggtctcctccccgcgcggctgaggagatctctcgggacatcggggttggggcggcgtgcatgatggggttctcgctcacgccgatgaagatctccacgaggcttctgtggagcaccagcttcttccgccacaagatcgccgccaccatcgcgtcctcctcctccttcttataagatcatcttctccgccacagcaatctgtaaatatatacacatcgaacgcgacaagcgcgtttgattgattggatttttctcccctctcctcacgacaagtaattaaggcgcgcgatctcgatctctagcgttgagaacttgatccgcgatggagtccggccggctcatcttcagcacggcgggctccggcgccgggcagatgctcttcttggactgcggcgctggcggcggcggcgtcggcggcggggccatgttccatcgagtgatgaaggggcgagaccggtgctcggcatggaggaaggagggcgcggcgtcaagcggcccttcttcaccacccccgacgagctcctcgaagaggagtactacgacgagcagctcccggagaagaagcggcgcctcacgccggagcaggtgcatctgctggagaggagcttcgaggaggagaacaagctggagccggagcggaagacggagctggcgcggaagctagggctgcagccgcggcaggtcgccgtgtggttccagaaccgccgcgcgcgctggaagaccaagcagctcgagcgcgacttcgaccgcctcaaggcgtcgttcgacgccctccgcgccgaccacgacgccctcctccaggacaaccaccgcctccactctcaggtcatgtcgttgaccgagaagctgcaagagaaggagacgacgaccgagggcagcgccggcgcggccgttgacgtcccgggcttgcctgcggcggccgacgtgaaggtcgccgtcccggacgccgaggaaccggcgctggaggaggcggcggcggcgttcgaggagcagcaggagcagcaggtgaaggccgaggacaggctgagcacgggcagcggcgggagcgcggtggtggacacggacgcgcaactggtggtcgggtgcggccggcagcatctcgccgccgtggacagcagcgtggagtcgtacttcccgggcggcgacgagtaccacgactgcgtgatgggccccatggaccacgccgcggggggcatccagtcggaggaggacgacggcgccggcagcgacgagggctgcagctactacgccgacgacgccggcgtcctcttcgccgaccacggccaccaccaccaccaccaacacgcggacgacgacgaggaggacggccagcagatcagctgctggtggatgtggaactagatttctcgcgcgcgcgcgtcgtcgtgcattcaattctcgtgttaaaaaaatcgttctctttttcatttttccgcttctttgtctgtaatgttgagtttcgatcggctatgagaaggaaggaggtgtatgcatgtgcatggtatggtagggtaacacatcggtgaatcaaatctgtcatggtgatgtacgagaattgaagaacatgggggtagcaataagtgcatggaggcaagtactcttttcaatggcacataccaaatcatgtcgtcgaattgagatttttattagtcttgaattcttcttgaacatgtcgtctctgattactgtagcatatatggtggttgatgattgacgtactccgcctccggttgaactgtagtgtgactagggagagccgagaggcgatcatcctcgtttaaatcaaaaagtttctgaagcttgaattttaagctggatgcaaaaaa

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