2024-09-29 10:28:21, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001401874 1820 bp mRNA linear PLN 08-APR-2024 DEFINITION Oryza sativa Japonica Group probable L-ascorbate peroxidase 8, chloroplastic (LOC4329643), transcript variant 1, mRNA; nuclear gene for chloroplast product. ACCESSION NM_001401874 XM_015767619 VERSION NM_001401874.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1820) AUTHORS Jiang,G., Yin,D., Zhao,J., Chen,H., Guo,L., Zhu,L. and Zhai,W. TITLE The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight JOURNAL Sci Rep 6, 26104 (2016) PUBMED 27185545 REMARK GeneRIF: The overexpressing lines exhibited increased tolerance to bacterial blight. The RNA interference (RNAi) lines were considerably more sensitive than the control plant. Publication Status: Online-Only REFERENCE 2 (bases 1 to 1820) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AB114856.1, CI581719.1 and CI408052.1. On Mar 3, 2022 this sequence version replaced XM_015767619.2. ##Evidence-Data-START## Transcript exon combination :: AB114856.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03003175, SAMN03003383 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-658 AB114856.1 1-658 659-661 CI581719.1 167-169 662-1651 AB114856.1 662-1651 1652-1820 CI408052.1 258-426 FEATURES Location/Qualifiers source 1..1820 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="2" /map="2" gene 1..1820 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /note="probable L-ascorbate peroxidase 8, chloroplastic" /db_xref="GeneID:4329643" exon 1..201 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /inference="alignment:Splign:2.1.0" CDS 31..1467 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /EC_number="1.11.1.11" /note="isoform 1 is encoded by transcript variant 1; putative thylakoid-bound ascorbate peroxidase; LOC_Os02g34810" /codon_start=1 /product="probable L-ascorbate peroxidase 8, chloroplastic isoform 1" /protein_id="NP_001388803.1" /db_xref="GeneID:4329643" /translation="
MAERIAASLLPAASPSPAPSPPPPRPRVSAAAAASFPCCSTSAGGLRLRSRPSRFPQKAATTRSGRAGAGARAVVRCMAAAAVAASDAAQLKSAREDIREILKTTYCHPIMVRLGWHDSGTYDKNIEEWPQRGGADGSLRFDAELSHGANAGLINALKLIQPIKDKYPGITYADLFQLASATAIEEAGGPKIPMKYGRVDVTAAEQCPPEGRLPDAGPRVPADHLREVFYRMGLDDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGEPGGQSWTVEWLKFDNSYFKDIKEQRDQDLLVLPTDAALFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSDLGAKFDPPEGFSLDDEPAVEEKDPEPAPAPAAAPPPPPVEEKKEAEPTPVPVTVGAAVASSPADDNNGAAPQPEPFVAAKYSYGKKELSDSMKQKIRAEYEGFGGSPDKPLQSNYFLNIMLLIGGLAFLTSLLGS"
transit_peptide 31..258 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /note="Chloroplast. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q69SV0.2)" misc_feature 31..123 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /note="propagated from UniProtKB/Swiss-Prot (Q69SV0.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 160..228 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /note="propagated from UniProtKB/Swiss-Prot (Q69SV0.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" mat_peptide 259..1464 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /product="Probable L-ascorbate peroxidase 8, chloroplastic. /id=PRO_0000042658" /note="propagated from UniProtKB/Swiss-Prot (Q69SV0.2)" misc_feature 298..1077 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /note="Ascorbate peroxidases and cytochrome C peroxidases; Region: ascorbate_peroxidase; cd00691" /db_xref="CDD:173825" misc_feature order(355..360,367..369,376..378,670..678,715..717, 754..759,763..768,772..786,793..798,862..864,940..942, 946..948,1030..1032,1042..1044) /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:173825" misc_feature 367..369 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /note="Transition state stabilizer. /evidence=ECO:0000255|PROSITE-ProRule:PRU00297; propagated from UniProtKB/Swiss-Prot (Q69SV0.2); other site" misc_feature order(598..600,766..768,772..777,781..783,904..906, 931..936) /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:173825" misc_feature 763..858 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /note="propagated from UniProtKB/Swiss-Prot (Q69SV0.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature order(769..771,865..867,871..873,880..882,886..888, 892..894) /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /note="K+ binding site [ion binding]; other site" /db_xref="CDD:173825" misc_feature 1066..1281 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /note="propagated from UniProtKB/Swiss-Prot (Q69SV0.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 1402..1464 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /note="propagated from UniProtKB/Swiss-Prot (Q69SV0.2); transmembrane region" exon 202..363 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /inference="alignment:Splign:2.1.0" exon 364..484 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /inference="alignment:Splign:2.1.0" exon 485..585 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /inference="alignment:Splign:2.1.0" exon 586..673 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /inference="alignment:Splign:2.1.0" exon 674..741 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /inference="alignment:Splign:2.1.0" exon 742..828 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /inference="alignment:Splign:2.1.0" exon 829..903 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /inference="alignment:Splign:2.1.0" exon 904..981 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /inference="alignment:Splign:2.1.0" exon 982..1086 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /inference="alignment:Splign:2.1.0" exon 1087..1314 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /inference="alignment:Splign:2.1.0" exon 1315..1820 /gene="LOC4329643" /gene_synonym="APX8; OsAPx08; OsAPx8; P0470G10.5" /inference="alignment:Splign:2.1.0" ORIGIN
aaaaactcactcgactcgagcgcgcgcgccatggcggagcgcatcgccgcctccctcctcccggctgcctcgccctcgcctgctccgtcccctccccccccgcgcccccgcgtctccgccgcggccgccgcctccttcccatgctgctccaccagcgccggcggcctccgcctccgctcccgcccgtctcgcttcccgcagaaggctgcgacgacgaggagcgggcgcgccggcgcgggggcgcgggcggtggtccggtgcatggcggcggcggcggtggcggcgtccgacgcggcgcagctcaagagcgcccgggaggacatcagggagatcctcaagaccacctactgccaccccatcatggtccgtcttgggtggcacgattctggcacgtacgacaagaacatcgaggagtggccgcagaggggcggagccgacgggagcttgagatttgacgccgaattgagccacggagccaatgctggtctgattaatgctttgaagcttatccaaccaatcaaggacaaatacccgggtataacttatgctgatttgttccagttggcaagtgctacagcaattgaggaagctggtgggccgaaaattccaatgaaatatggacgagttgatgtcacagcagctgagcagtgcccaccagaggggaggcttcctgatgccggtccacgtgtgcccgctgatcatcttagggaggtattctacaggatgggccttgatgacaaggaaattgttgcattatctggagcacacacacttggaagatcaagacctgacaggagtggctggggaaagccagaaacaaaatatactaaggatgggcctggtgaacctggagggcaatcatggacagttgaatggttgaagtttgataacagttacttcaaggacataaaagagcaaagggaccaggatcttctagtgctacccacagatgctgcattatttgaggatccgtccttcaaggtatatgccgaaaaatatgcagaggatcaggaggcattctttaaagactacgctgaagctcatgctaaactgagcgaccttggtgcaaagttcgatccacctgagggattttcactggacgatgaaccagccgtcgaagagaaggatcctgaaccagcaccagcgccagcagcagcaccaccacctccaccagtcgaggagaagaaggaagctgaaccaactccagtaccagtaacggtaggagcagcagtggcatcatcgccagcggatgacaacaacggtgcagcaccgcaaccagagcccttcgtcgctgcgaaatactcctacggaaagaaggagctgtcggactcgatgaagcagaagatcagggcggagtacgagggattcggaggcagcccggacaagcctctgcagtccaactacttcctcaacatcatgctcttgatcggagggctggccttcttgacgtctctgctcgggagctgagagcgatggtctgatgacctcctctgacgagtgttttgagttgttctgcctgtgctaagatttgcgtgtttctctttccatgttttgagtcgttattccgtaaataaattgaggtaaaaggatgggcatgtgaatggattccagtactttctgaacttcttgagtaattcctctagagaaatatttgtcggagagaaatgtcacattatctagttgtcatggctcatgactacattctctatactgagggaaattatgacattctctaaactaaggagggaaataatgaggacaccccatatatcactctttcttatggcatgttcagtataaaaggaaagtgcattttcctc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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