2024-09-29 10:38:36, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001401527 1173 bp mRNA linear PLN 12-JUN-2024 DEFINITION Oryza sativa Japonica Group rac-like GTP-binding protein 1 (LOC4325879), mRNA. ACCESSION NM_001401527 XM_015766159 VERSION NM_001401527.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1173) AUTHORS Wang,Q., Li,Y., Ishikawa,K., Kosami,K.I., Uno,K., Nagawa,S., Tan,L., Du,J., Shimamoto,K. and Kawano,Y. TITLE Resistance protein Pit interacts with the GEF OsSPK1 to activate OsRac1 and trigger rice immunity JOURNAL Proc Natl Acad Sci U S A 115 (49), E11551-E11560 (2018) PUBMED 30446614 REMARK GeneRIF: This study concluded that OsSPK1 is a direct and key signaling target of Pit-mediated immunity via RAC1 activation. REFERENCE 2 (bases 1 to 1173) AUTHORS Yamaguchi,K., Imai,K., Akamatsu,A., Mihashi,M., Hayashi,N., Shimamoto,K. and Kawasaki,T. TITLE SWAP70 functions as a Rac/Rop guanine nucleotide-exchange factor in rice JOURNAL Plant J 70 (3), 389-397 (2012) PUBMED 22142166 REMARK GeneRIF: Reduction of OsSWAP70A and OsSWAP70B mRNA levels by RNA interference resulted in the suppression of chitin elicitor-induced defense gene expression and ROS production. It is likely that OsSWAP70 regulates immune responses through activation of OsRac1. REFERENCE 3 (bases 1 to 1173) AUTHORS Fujiwara,M., Hamada,S., Hiratsuka,M., Fukao,Y., Kawasaki,T. and Shimamoto,K. TITLE Proteome analysis of detergent-resistant membranes (DRMs) associated with OsRac1-mediated innate immunity in rice JOURNAL Plant Cell Physiol 50 (7), 1191-1200 (2009) PUBMED 19502382 REMARK GeneRIF: OsRac1-mediated innate immunity is associated with detergent-resistant membranes. REFERENCE 4 (bases 1 to 1173) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI594958.1, AK071126.1, CI241725.1 and AU030691.1. On Feb 15, 2022 this sequence version replaced XM_015766159.2. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN03003383 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-412 CI594958.1 1-412 413-471 AK071126.1 413-471 472-873 CI241725.1 1-402 874-1173 AU030691.1 288-587 FEATURES Location/Qualifiers source 1..1173 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="1" /map="1" gene 1..1173 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="rac-like GTP-binding protein 1" /db_xref="GeneID:4325879" exon 1..233 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /inference="alignment:Splign:2.1.0" misc_feature 66..68 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="upstream in-frame stop codon" CDS 123..767 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="LOC_Os01g12900" /codon_start=1 /product="rac-like GTP-binding protein 1" /protein_id="NP_001388456.1" /db_xref="GeneID:4325879" /translation="
MSSAAAATRFIKCVTVGDGAVGKTCMLICYTCNKFPTDYIPTVFDNFSANVSVDGSVVNLGLWDTAGQEDYSRLRPLSYRGADVFILSFSLISRASYENVQKKWMPELRRFAPGVPVVLVGTKLDLREDRAYLADHPASSIITTEQGEELRKLIGAVAYIECSSKTQRNIKAVFDTAIKVVLQPPRHKDVTRKKLQSSSNRPVRRYFCGSACFA"
misc_feature 150..668 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="Rho-related protein from plants (Rop)-like; Region: Rop_like; cd04133" /db_xref="CDD:206705" misc_feature order(156..158,246..251,255..260,264..266,270..272, 297..299,309..314,318..326,342..344,351..353) /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="putative GEF (guanine nucleotide exchange factor) interaction site [polypeptide binding]; other site" /db_xref="CDD:206705" misc_feature 171..194 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="G1 box; other site" /db_xref="CDD:206705" misc_feature order(180..197,312..317,321..323,489..491,495..497, 612..617) /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206705" misc_feature 237..263 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="propagated from UniProtKB/Swiss-Prot (Q9SSX0.1); Region: Effector region. /evidence=ECO:0000255" misc_feature 243..263 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="Switch I region; other site" /db_xref="CDD:206705" misc_feature 246..248 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="G2 box; other site" /db_xref="CDD:206705" misc_feature order(249..251,318..320,342..344,348..350) /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="putative GDI (guanine nucleotide dissociation inhibitor) interaction [active]" /db_xref="CDD:206705" misc_feature order(249..254,324..326,342..344) /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="putative GAP (GTPase-activating protein) interaction site [polypeptide binding]; other site" /db_xref="CDD:206705" misc_feature order(252..257,342..344,351..353) /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="putative effector interaction site [active]" /db_xref="CDD:206705" misc_feature 312..323 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="G3 box; other site" /db_xref="CDD:206705" misc_feature order(321..326,342..353,366..374) /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="Switch II region; other site" /db_xref="CDD:206705" misc_feature 486..497 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="G4 box; other site" /db_xref="CDD:206705" misc_feature 609..617 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /note="G5 box; other site" /db_xref="CDD:206705" exon 234..321 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /inference="alignment:Splign:2.1.0" exon 322..431 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /inference="alignment:Splign:2.1.0" exon 432..495 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /inference="alignment:Splign:2.1.0" exon 496..560 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /inference="alignment:Splign:2.1.0" exon 561..626 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /inference="alignment:Splign:2.1.0" exon 627..733 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /inference="alignment:Splign:2.1.0" exon 734..1157 /gene="LOC4325879" /gene_synonym="OsRac1; Rac1" /inference="alignment:Splign:2.1.0" ORIGIN
ggcaagttcaaacggagctggaggcagagctagagtgagactgtgagagtgaacaagagataagctaagctagtacagcaaccagcaagaacaaagaagagtggccggagtgggcgggggagatgagctcggcggcggcggcgacgaggttcatcaagtgcgtcaccgtgggggacggcgcggtggggaagacgtgcatgctcatctgctacacctgcaacaagttccccaccgattacatccccaccgtgttcgacaacttcagcgccaatgtctccgtggacgggagcgtcgtcaacctcggcctctgggacactgcaggtcaggaggattacagcaggttgaggcctctgagctacaggggagccgatgtgttcatcctgtccttctccctgataagcagggcgagctatgagaatgttcagaagaagtggatgccagagcttcgccggtttgcgcctggtgttcctgtagttcttgttggaaccaagttggatctccgtgaagatagggcctatcttgctgatcatccagcttcttccataataacaacggagcagggagaagaactgaggaagctaataggagcggtcgcctacatcgaatgcagctccaagacacagagaaacattaaagctgttttcgacactgccatcaaagtggtgcttcaacctccaagacataaggatgtaaccagaaagaaactccaatcaagctccaatcggccagtaaggcggtacttttgcggaagcgcttgtttcgcgtagtcaataaccaagaagaaaaaaatgtggtttttgttccatcaccatgatgttcagatggccccatggatctactcagaatgggatagaagatcatggttgaatcaacattgcttgcagctaggaggaacttctagttctctttttttctgcagtggagctccttttgtttctcctttctctttttttcttatgttgtaaaagctccagaaagttttacccttggtaataagatgtgctcttctggatggctacctttacccgtatctcctttcactttgcgaaatgttggaaactactggacctaacagacctaacagacaaacaaaaaagaagccacatgcttcaaccttttcttatatactttggattgaatacataggaagttaattaaaaaaaaaaaaaaaaa
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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