2024-09-29 10:34:28, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001401492 1523 bp mRNA linear PLN 14-FEB-2022 DEFINITION Oryza sativa Japonica Group homeobox protein knotted-1-like 1 (LOC4325788), mRNA. ACCESSION NM_001401492 XM_015778811 VERSION NM_001401492.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK241312.1 and AP014957.1. On Feb 14, 2022 this sequence version replaced XM_015778811.2. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AK241312.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-431 AK241312.1 4-434 432-434 AP014957.1 11167632-11167634 435-459 AK241312.1 438-462 460-462 AP014957.1 11167660-11167662 463-1523 AK241312.1 466-1526 FEATURES Location/Qualifiers source 1..1523 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="1" /map="1" gene 1..1523 /gene="LOC4325788" /gene_synonym="HOS16; OSH6" /note="homeobox protein knotted-1-like 1" /db_xref="GeneID:4325788" exon 1..396 /gene="LOC4325788" /gene_synonym="HOS16; OSH6" /inference="alignment:Splign:2.1.0" misc_feature 199..201 /gene="LOC4325788" /gene_synonym="HOS16; OSH6" /note="upstream in-frame stop codon" CDS 202..1107 /gene="LOC4325788" /gene_synonym="HOS16; OSH6" /note="P0035H10.13; putative knotted1-type homeobox protein; B1146F03.18; knotted1-type homeobox protein OSH6; Homeobox protein HOS16; Homeobox protein OSH6; LOC_Os01g19694" /codon_start=1 /product="homeobox protein knotted-1-like 1" /protein_id="NP_001388421.1" /db_xref="GeneID:4325788" /translation="
MEDLYSIHPGISRVGGAASEASGVGVVVGGGGGSSSSDLTELMKAQIAGHPRYPTLLSAYIECRKVGAPPEVASLLKEIGRERRAGGGGGGAGQIGVDPELDEFMEAYCRVLVRYKEELSRPFDEAASFLSSIQTQLSNLCSGATSPPATTATHSDEMVGSSDEDQCSGETDMLDIGQEQSSRLADHELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALLEWWNTHYRWPYPTEEDKLRLAARTGLDPKQINNWFINQRKRHWKPSDGMRFALMEGVAGGSSGTTLYFDTGTIGP"
misc_feature 325..438 /gene="LOC4325788" /gene_synonym="HOS16; OSH6" /note="KNOX1 domain; Region: KNOX1; pfam03790" /db_xref="CDD:461051" misc_feature 481..624 /gene="LOC4325788" /gene_synonym="HOS16; OSH6" /note="KNOX2 domain; Region: KNOX2; pfam03791" /db_xref="CDD:427506" misc_feature 622..711 /gene="LOC4325788" /gene_synonym="HOS16; OSH6" /note="propagated from UniProtKB/Swiss-Prot (Q9FP29.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 763..828 /gene="LOC4325788" /gene_synonym="HOS16; OSH6" /note="ELK domain; Region: ELK; pfam03789" /db_xref="CDD:427504" misc_feature 886..1002 /gene="LOC4325788" /gene_synonym="HOS16; OSH6" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 397..516 /gene="LOC4325788" /gene_synonym="HOS16; OSH6" /inference="alignment:Splign:2.1.0" exon 517..667 /gene="LOC4325788" /gene_synonym="HOS16; OSH6" /inference="alignment:Splign:2.1.0" exon 668..918 /gene="LOC4325788" /gene_synonym="HOS16; OSH6" /inference="alignment:Splign:2.1.0" exon 919..1523 /gene="LOC4325788" /gene_synonym="HOS16; OSH6" /inference="alignment:Splign:2.1.0" ORIGIN
agctgctgaattcccccatgagcctctgcctccctgcctgcccccgtatgtagcaagaacaagaacaccagcgagtaacacaggctcgctacagtggtactagattaccgcttgtgcgggcatagtgatcgtctatagttgtgaattgcgatgcagcagcataggtggtgagctgctgcggctgctgctgctggtacgtagatggaggatctgtacagcatccacccggggatctcgcgggtcggcggcgcggcgagcgaggcgtccggcgtgggcgtcgtcgtcggcggcggcggcgggtcgtcgtcgtcggatctgacggagctcatgaaggctcagatcgccggtcacccgcgctacccgaccctcctctccgcctacatcgagtgtcgcaaggtgggagcgcctccggaggtggcgtcgctgctgaaggagatcggccgggagaggcgcgccggcggcggcggcggcggcgccgggcagatcggcgtcgaccccgagctcgacgagttcatggaggcgtactgccgggtgctggtgcgctacaaggaggagctgtcccggccgttcgacgaggcggcgtctttcctcagcagcatccagacgcagctcagcaacctctgcagcggcgccacctcgccgccggccaccaccgccacgcactccgatgaaatggtggggtcctccgacgaagaccagtgctcgggggagactgatatgctagatatagggcaagagcaaagctcccgcttagctgaccacgaactcaaggaaatgcttctgaagaagtacagtggctgcctcagccggctccggtccgagttcctgaagaagcggaagaaagggaagctaccaaaggacgcacggtcggcactgcttgaatggtggaacacacactaccgctggccatatcccacggaagaagataagctgaggcttgcagcgaggacaggtcttgacccaaagcagatcaacaattggttcatcaaccagaggaagaggcactggaagccatcggacgggatgcggttcgcgctcatggagggcgtggcgggtggatcgtccgggacgacgctctacttcgacactggcacaattggaccatgaattcatttttgagcaatgccgcctcttgagaaaattggccatttaggcagtaatagtaggacatggtatttggtggtgattgtgtctagctatgatcaatctttcagcaggtcagtgttattcagttcagggtaaagtaattgcctcattgttttggcagatcatgtgtatatggcatcgtaccaaatcaaaatgtataatcgttaggtaatatatatcttggggagacctgaaaaggctgttattagtagtttcatgtaatggctcaactcaagggttgtgagtaatctttgtccacactgcgtacccagctggactgttagataggccgaggacttgaaaaaggtaagtttacctgtactaaaatgtttgcctattattttgtctatatttataaattcatttgttcggacttc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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