2024-09-29 10:25:26, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001401468 2754 bp mRNA linear PLN 14-FEB-2022 DEFINITION Oryza sativa Japonica Group homeobox-leucine zipper protein ROC9-like (LOC4325622), mRNA. ACCESSION NM_001401468 XM_015788973 VERSION NM_001401468.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AP014957.1, AB101652.1, CI119231.1 and CI229819.1. On Feb 14, 2022 this sequence version replaced XM_015788973.2. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00008650, SAMN02716058 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-264 AP014957.1 32009716-32009979 c 265-480 AP014957.1 32009394-32009609 c 481-648 AB101652.1 1-168 649-861 AP014957.1 32008664-32008876 c 862-1266 AP014957.1 32008160-32008564 c 1267-1368 AP014957.1 32007969-32008070 c 1369-1581 AP014957.1 32007672-32007884 c 1582-1756 AP014957.1 32007412-32007586 c 1757-1953 AP014957.1 32007130-32007326 c 1954-2206 CI119231.1 1-253 2207-2754 CI229819.1 1-548 FEATURES Location/Qualifiers source 1..2754 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="1" /map="1" gene 1..2754 /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /note="homeobox-leucine zipper protein ROC9-like" /db_xref="GeneID:4325622" exon 1..264 /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /inference="alignment:Splign:2.1.0" misc_feature 124..126 /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /note="upstream in-frame stop codon" CDS 196..2547 /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /note="putative homeobox protein GLABRA2; P0460E08.22; P0512C01.11; putative homeodomain protein; GL2-type homeodomain protein; GLABRA 2-like homeobox protein 9; HD-ZIP protein ROC9; Homeodomain transcription factor ROC9; LOC_Os01g55549; Protein RICE OUTERMOST CELL-SPECIFIC 9" /codon_start=1 /product="homeobox-leucine zipper protein ROC9" /protein_id="NP_001388397.1" /db_xref="GeneID:4325622" /translation="
MGTNRPRPRTKDFFAAPALSLTLAGVFGRKNGPAASGGDGVEEGDEEVQAAGEAAVEISSENAGPGCRQSQSGGGSGEDGGHDDDDGEGSNKKRRRKNYHRHTAEQIRIMEALFKESPHPDERQRQQVSKQLGLSARQVKFWFQNRRTQIKAVQERHENSLLKSELEKLQDEHRAMRELAKKPSRCLNCGVVATSSDAAAAATAADTREQRLRLEKAKLKAEIERLRGTPGKSAADGIASPPCSASAGAMQTNSRSPPLHDHDGGFLRHDDDKPRILELATRALDELVGMCSSGEPVWVRGVETGRDILNYDEYVRLFRRDHGGSGDQMAGWTVEASRECGLVYLDTMHLVHTFMDVDKWKDLFPTMISKAATLEMISNREDDGRDGVLQLMYAELQTLTPMVPTRELYFARYCKKLAAERWAIVDVSFDESETGVHASSAVRCWKNPSGCLIEEQNNGRCKMTWVEHTRCRRCTVAPLYRAVTASGVAFGARRWVAALQLQCERMVFAVATNVPTRDSTGVSTLAGRRSVLKLAHRMTSSLCRTTGGSCDMAWRRAPKGGSGGGGDDDIWLTSRENAGDDPGEPQGLIACAAASTWLPVNPTALLDLLRDESRRPEWDVMLPGKSVQSRVNLAKGKDRTNCVTAYAARPEEEEERGGKWVLQDVCTNPCESTIAYAAIDAAALQPVIAGHDSSGVHLLPCGFISVMPDGLESKPAVITASRRGGEASGAGSLVTVAFQVPASPSAAAATLSPDSVEAVTVLVSSTLRNIRKALGCDSCEEEF"
misc_feature 481..648 /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 1012..1707 /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /note="C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins; Region: START_ArGLABRA2_like; cd08875" /db_xref="CDD:176884" misc_feature order(1096..1101,1132..1134,1204..1206,1210..1212, 1243..1245,1255..1257,1267..1269,1276..1281,1294..1299, 1378..1380,1384..1395,1402..1404,1411..1413,1417..1419, 1423..1425,1471..1473,1525..1527,1531..1542,1546..1548, 1582..1584,1588..1590,1594..1596,1600..1602,1606..1608, 1612..1614,1630..1632,1636..1644,1648..1656,1663..1668, 1675..1677) /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /note="putative lipid binding site [chemical binding]; other site" /db_xref="CDD:176884" exon 265..530 /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /inference="alignment:Splign:2.1.0" exon 531..648 /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /inference="alignment:Splign:2.1.0" exon 649..861 /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /inference="alignment:Splign:2.1.0" exon 862..1266 /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /inference="alignment:Splign:2.1.0" exon 1267..1368 /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /inference="alignment:Splign:2.1.0" exon 1369..1581 /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /inference="alignment:Splign:2.1.0" exon 1582..1756 /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /inference="alignment:Splign:2.1.0" exon 1757..2046 /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /inference="alignment:Splign:2.1.0" exon 2047..2133 /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /inference="alignment:Splign:2.1.0" exon 2134..2754 /gene="LOC4325622" /gene_synonym="GL2-9; Roc9" /inference="alignment:Splign:2.1.0" ORIGIN
tgtaaaatgccatgtatctagtaccagtagaacagttgtactacctcctgatggtctcacgtaacttctttgttccctttctcttcaattacgccattgccgtcttgcccggtcgatcaaccctagctttctaagccctacaaaagacagcatccatctgctagtgttagcttagccttcagagttcagagagagatggggaccaaccggccgcggccacgaaccaaggacttcttcgcagctccggcgctctccctcacactggcaggcgtgttcggccggaaaaatggacctgcggcgtcgggtggagacggggtggaggaaggcgacgaggaggtgcaggctgcaggcgaggcggcggtggagatcagcagcgagaacgcggggccggggtgtagacagtcccagtccggcggtggctccggggaagacggcggccatgacgacgacgacggagagggtagtaataagaagaggaggaggaagaactaccacaggcacaccgccgaacaaatcaggatcatggaagcgctattcaaagagtccccacatccggatgagaggcagcggcagcaggtcagtaagcagctcggcctctctgcacgccaggtcaagttctggtttcagaaccgacgaactcagatcaaggcggttcaggagcgacacgagaactcgctgctcaagtccgagctggagaagctccaggacgagcaccgcgcgatgagagagctcgccaagaagccatctcgctgcctaaactgcggcgtcgtggcaacctccagcgacgccgccgccgccgccacggcggcggacacccgtgaacagcggctgcgactcgagaaagccaagctcaaagctgagatagagaggctgcgagggacgccaggaaagtccgccgccgatggaatcgcctcgccgccgtgctccgcgtccgcgggcgccatgcagacgaacagcaggagcccgccgttgcacgaccacgacggcggcttcttacgccacgacgacgacaagccgaggatcttggagctggccacccgtgcgctggacgagctggttgggatgtgctcctccggcgagcctgtgtgggtgcggggcgtcgagaccggcagggacattctgaactacgacgagtacgtgcgcttgttccgccgcgaccacggtggttccggcgatcagatggccggctggacggttgaggcttccagggaatgtggactagtttaccttgacacgatgcatcttgtgcacactttcatggacgtggacaagtggaaggacctattccctaccatgatctcaaaggcagcgacgctggaaatgatcagcaaccgcgaagacgatggccgagacggcgtcctgcaactgatgtatgcagagcttcagacactgacaccaatggtgcccacgagggagttatacttcgcccgctactgcaagaagctggccgcggagagatgggcgatcgtcgacgtgtccttcgacgagtctgagactggcgtccacgcgtcgtcggcggtcaggtgctggaagaacccatccggctgcctcatcgaagagcagaacaacggccggtgcaagatgacctgggtggagcacaccagatgccgccggtgcacggtcgcgccgttgtaccgggcggtcaccgcgagcggcgtggcgttcggcgcgagacgctgggtggccgcgctccagctccagtgcgagaggatggtcttcgccgtggcgaccaacgttccaacgagggactcgaccggggtctccacgctcgcgggcaggaggagcgttctgaaactggcgcaccggatgacgtcgagcctctgccgcaccaccggtggatcgtgtgacatggcgtggcgcagggcgccgaaaggaggcagcggcggcggtggcgacgacgacatctggctgacgtcccgggagaacgccggcgacgaccctggcgagccgcaggggctgatcgcgtgcgccgcggcgtcgacgtggctgccggtgaatccgacggctctcctcgacttactgagggatgaatcacggcgaccagagtgggacgtgatgctacccggaaaatctgttcagagccgcgtgaatcttgcaaaggggaaggaccgtaccaactgcgtcaccgcctacgccgctcgaccggaagaagaagaagagagaggcggcaagtgggtcctccaggacgtctgcaccaacccctgcgagtcgacgatcgcgtacgcggcgatcgacgccgccgcgctgcagccggtcatcgccgggcacgactcgagcggcgtgcacctcctgccgtgcggattcatctcggtgatgccggacgggctcgagtccaagccggcggtgatcacggcgtcgaggaggggaggcgaggcttcgggggccggatcgctggttaccgtggcgttccaggtcccggccagcccgtcggcggcggcggccacgctctcgccggactcggtggaggccgtgacggtcctggtctcctccactctgcgtaacatcaggaaagccttggggtgcgactcgtgcgaggaggaattctagtccacgggacgcggaaatattctactcctacttcggattcgttattcgtatgatactccacgactccacgtgaccatgtttgcaaagtaaatttgcatcgtgacttaccatgaacataagtgtacagctaaagggatactcgtactatagaactacacggtactgtaaagtcaacaattaagcgttaaaaatcccccgtcttgcaga
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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