2024-05-21 22:49:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_033887958 2474 bp mRNA linear INV 28-APR-2020 DEFINITION PREDICTED: Pecten maximus PDZ domain-containing protein 11-like (LOC117329806), mRNA. ACCESSION XM_033887958 VERSION XM_033887958.1 DBLINK BioProject: PRJNA625562 KEYWORDS RefSeq. SOURCE Pecten maximus ORGANISM Pecten maximus Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae; Pecten. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_047020.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pecten maximus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2474 /organism="Pecten maximus" /mol_type="mRNA" /db_xref="taxon:6579" /chromosome="6" gene 1..2474 /gene="LOC117329806" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns" /db_xref="GeneID:117329806" CDS 87..545 /gene="LOC117329806" /codon_start=1 /product="PDZ domain-containing protein 11-like" /protein_id="XP_033743849.1" /db_xref="GeneID:117329806" /translation="
MTLDGKELVYANLPDYEDPPEWIHPHDRPYSEDYSNEIHQFLPRQLILQRNQVSEQLGFNIRGGKEHHCGIYVSKVTMDSEADKLGLQEADQILSVNRVNFEEIDHAEAVNILKRNTSINMQVRYFPYGYDRTYDKSRYLLANHQQSPNSNH"
misc_feature 213..458 /gene="LOC117329806" /note="PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal)...; Region: PDZ_signaling; cd00992" /db_xref="CDD:238492" misc_feature order(252..263,267..269,411..416,423..428) /gene="LOC117329806" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:238492" ORIGIN
agtgtagttaagcgtctcgtttacgctgatagctgtatagacagcagacaagctttcctctgcatttagttaaataatacaacgagatgacactagacgggaaggaattggtatatgccaatctaccagattatgaagatccaccagaatggatacatccgcacgataggccttacagtgaagactatagtaatgaaatacaccagttcctgccaagacaattaattctccagcgaaaccaagtttctgaacagcttggattcaatatcaggggaggtaaagaacaccattgtgggatttatgtatcaaaggtgacgatggacagtgaagcagacaaactcggactacaggaagcagatcagattttgtctgtaaacagagttaactttgaagagatagatcatgctgaggcagtgaacattttaaaaagaaacacatccatcaacatgcaagtccgatatttcccatatggttatgatagaacttatgacaagagtcggtatttactggccaaccatcagcagtctccaaatagtaatcactagtgtcaactcctgtaccaacagatcagatcattggaatgtttgcttgctgtaggggatgttatagttaattcaagggtgtcttttacctagattaatgttccatctagatctacaaccctcacatcactggaatgtttgcttactacagtgaatatacctgtgaattcaagtgtgtgaaaaaccaggataaactggccatctgacagtataatggtttaaggtatatgcacagcaagactacagccattttttcatgaagttcaaaaagttttaccagttcgactggagttaatgaaaaaaggaccgacctaatgatctcattttgctgtgaggcgaataccaacaactatgttcaaggttctattaacatatgcaggttcatcagtttttatatcttcagatgttacaattgaatataaaagtggtttgtccacccaaaccaacaggcactatagtttccttcactgagacgagtttcctatttctttatcaacatgatgcatactgacacaacagttgataacatttagtttttgcaagaaattaatataaatatttgccatgacattattactttgttacttttcatacaaaaagttgtttttaatatgatacacatttcatatcaaaacatcatttgatacaatgtactgttgtactttatgcatgcatagactagcatttttttcagtgcacaaaatatatatacttaccagatttatctacattatataccattagttttagtttgtcagattgatacattgaactctattgttaaagattaataaatagaaatctattgttttttcatcaaatgtcagaattttagttcttaaatagattgtatcaaccttgtaattacatgctgtattttgatattcatcaaactgaaaacaaaatagattatattcaaaccagtattaaagtttattaattagtcccccactagttcagaggggactactttctgttctttctcacttttcttttgttcaggatcatcctcgaactcatatactaagggggccgcggtggccgagtggttaaggtgtcccgacactttatcactagccctccacctctgggttgcgagttcgaaacctacgtggggcagttgccaggtactgactctaggctggtggttttcctccgggtactccggctttcctccaccttcaaaacctggcacgtccttaaatgaccctggctgttaataggacgttatgcaaaaacaaccccaaaaatacaaacctcatgtactacatataactggtagtttatacagtaattagggcattggttcatctaggtcatgtataccagaaataggtcactctgacctatattttgacatttgatcttcattacagaatctgatgaagtttgtcaggtctttattctctacattctgcttgtaactggaacttggagcatcgtttgacctagatgaggtggtgtgtcatgtatcaaaattaggtcattgtgacctacattttgatatttgatctacattacagatacagtttgtcagggttctattttcttcaatctacttatcactggaactttgtacttggggcatggttcaacatatatgaggtggtgtgtcatgtatcaaaagtaggtcactttgacctacattttgaattttgacctacatcaaagaaaaggtctgtctgttcataggatatgatttacatttgacggggaactgtgatttgccagctattcttgtttacattaatcttgttttttttttcaattaattacaccagatgtatcattcaggatataaaataggcattgattaaaataaagcatgcacatgtacaagaagcagattggagcagacttcaaaaatgtcattattggtttaatacattacaaagttaattgttaatcaatagtaataatcgttaatcacaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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