2024-05-21 22:59:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001400627 3101 bp mRNA linear ROD 12-JUN-2023 DEFINITION Rattus norvegicus RecQ mediated genome instability 1 (Rmi1), transcript variant 2, mRNA. ACCESSION NM_001400627 XM_039096369 VERSION NM_001400627.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 3101) AUTHORS Suwa A, Yoshino M, Yamazaki C, Naitou M, Fujikawa R, Matsumoto S, Kurama T, Shimokawa T and Aramori I. TITLE RMI1 deficiency in mice protects from diet and genetic-induced obesity JOURNAL FEBS J 277 (3), 677-686 (2010) PUBMED 20050919 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000284.1. On Jan 26, 2022 this sequence version replaced XM_039096369.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00132291, SAMD00132293 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-235 JACYVU010000284.1 6263589-6263823 c 236-831 JACYVU010000284.1 6261225-6261820 c 832-916 JACYVU010000284.1 6259667-6259751 c 917-3101 JACYVU010000284.1 6256533-6258717 c FEATURES Location/Qualifiers source 1..3101 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="17" /map="17p14" gene 1..3101 /gene="Rmi1" /gene_synonym="RGD1310671" /note="RecQ mediated genome instability 1" /db_xref="GeneID:306734" /db_xref="RGD:1310671" exon 1..235 /gene="Rmi1" /gene_synonym="RGD1310671" /inference="alignment:Splign:2.1.0" exon 236..831 /gene="Rmi1" /gene_synonym="RGD1310671" /inference="alignment:Splign:2.1.0" exon 832..916 /gene="Rmi1" /gene_synonym="RGD1310671" /inference="alignment:Splign:2.1.0" misc_feature 898..900 /gene="Rmi1" /gene_synonym="RGD1310671" /note="upstream in-frame stop codon" exon 917..3101 /gene="Rmi1" /gene_synonym="RGD1310671" /inference="alignment:Splign:2.1.0" CDS 946..2799 /gene="Rmi1" /gene_synonym="RGD1310671" /note="RMI1, RecQ mediated genome instability 1, homolog" /codon_start=1 /product="recQ-mediated genome instability protein 1" /protein_id="NP_001387556.1" /db_xref="GeneID:306734" /db_xref="RGD:1310671" /translation="
MSVASAVLRVETWLLATWNIKVPLMWLEACVNWIQEENNSANLSQAQINKQVLEQWLLTDLRDLEHPLLPDDILEIPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKSTTNDLVSAETQTAPEPWQVRPSRMLMLQLTDGVTQVQGMEYQSIPALHSALPPGTKILVHGHILFRLGVLLLKAENVKVLGGEVDGLAEEYAQEKILARLIGEPDPTVSVIPNNSNPSAPRVSGDLDAALGPSDEELLASLDESEEPAASDDVTVGRLSFSTGPSSDTAPTIQTGFEPGCNISSRPKEKLPNQPVHFTDGEFDDFSLEEALLLEETVQKEKMEAKASQPLSLKESVGKRVEEAFSPRPGGLNHTASTHKQGNSHFSEKTSEQMIHEDTLFDCSSTRHHRKRLLAHDFTKDSKISEVDDVAQQTTNSSDVHCLSNKMLNRKPDLSEKSSQHSKGNGHPFQTCSSRSFENNTNLSIGMDLHCPPFIYLSVLMARKPKEVTTVKVKAFIVTLTGNLSSSGGFWCVTAKVSDGTAYLDVDFIDEILTSMIGYSVPEMKQLKKDPLKYKKFLEGLQKCQRDLIDLCCLMTVSYDPSSCKGMVLELQDVGVEHLENLKKRLNK"
misc_feature 985..1557 /gene="Rmi1" /gene_synonym="RGD1310671" /note="RecQ mediated genome instability protein; Region: RMI1_N; pfam08585" /db_xref="CDD:430090" misc_feature 2386..2778 /gene="Rmi1" /gene_synonym="RGD1310671" /note="Recq-mediated genome instability protein 1, C-terminal OB-fold; Region: RMI1_C; pfam16099" /db_xref="CDD:435136" ORIGIN
gctgctcacgtgtgcggggaaagggggcggccgcgggggattttcgagccccgagggagttgggcgggggctggaggaggaggagggacgcccgagcgcggcggattgggcgggaagaagtgaaaagagaggggaagagaaaaccctaggaacaggaaagggagagcaccgggcggcgcgcggccccgggatcacgctactgccgctgtcgtgcgaggcgaggcggcaaggccagggcttctctgtgtatccctggctggagctccctctgtagacccaggctgtcctcaatctcagcttcgattgcctctgcctccgagtactgggataaagaagtgtgttgctgctggccagtccggcttcatgatcacttacgtcagtgctaatacatcactttttacctctgactttctttttggattaccttccaagaatcctgaagttatcttggtgtctttaacaagtcaaaaataggtgtttttttcttttttttaacatattggatgtgtgactgtgcacacatggctatacaagcaagtgggagccacagccagccttgtggagttggttctctcctctacccattggaccataggagtggactcatttattacgtttggtggcaggacctttaccctaagccatcttcctggcccaacttaatttttagaagaaaatagaaacataaaatgaatataaatatttgttactgatttaagatctcacctattgattgaacatcacatacaatatctagggatagtattctattaaaaaatttgaatctgattgaaaactaatcatggagtcaagtatgcctaaaccttagtgagtcatttctctgcagaagaggctttgagtactgaccatccagcgtgaaatccggtcattagatcttaggctgtcctgctaagtggtggatgtggatgctcctatttaaaagaaatgagtgtagctagtgctgtattaagagtcgaaacctggcttttggcaacatggaatattaaagtgcctctgatgtggctggaagcttgtgttaactggatccaagaagaaaataatagtgctaacttgagtcaggcacaaataaataagcaagtgttagagcaatggcttcttactgacctgagagacctggaacatcctctcttacctgatgacattttagaaattccaaagggagaactgaatgggttttatgctctacagatcaattccttggttgacgtaagtcagcctgcgtattcccagatacaaaagctgagaggaaagagtacaaccaatgatctagtgtcagcggaaacgcagacggccccagagccatggcaagtaaggccttctcggatgctgatgctgcagctcactgacggtgtcacacaagtccaggggatggaataccagtctattcccgctctccacagtgctcttcctccaggtacaaagatcctagttcatgggcacattttgttccgccttggtgttctcttactgaaggcagaaaacgtgaaggtgctaggaggggaggtagatggtcttgcagaagaatatgcccaagagaaaatacttgcaagattaattggagaacctgaccctacagtttcagtcattccaaataattctaatcccagcgcgcccagagtttcaggggatttagatgctgctttggggccttcagacgaagaactcttggcaagccttgatgaaagtgaagagcctgcagcaagtgatgatgtgacggtggggagactcagcttcagcacaggcccttcctcagatactgccccaacaattcagactggttttgagccgggatgtaatatttcttcaaggccaaaggagaaactaccaaaccagcctgtgcatttcactgatggagaatttgatgacttttccctggaagaggccttgcttttggaagaaacggtccagaaagagaaaatggaagcaaaagcatcacagccactgagtttgaaggagagcgtgggtaaacgtgtggaggaggccttctcacctagacctgggggtctgaaccacacagcctcgactcataaacaaggaaacagccacttcagtgagaaaacatctgaacagatgatccatgaagacacactttttgactgttcatctactagacaccatcgtaagagactcttagctcatgattttacaaaagacagtaagatttcagaagtagatgatgtagcacaacaaaccaccaacagttcagatgtacattgcttaagtaataaaatgttaaacaggaagccggacctatcagagaagagttcacaacattctaaaggaaatggccaccctttccagacttgttcttcaagatcatttgagaataatactaacctatctattggcatggacttacactgtccaccctttatctatttgtctgttctaatggccagaaagccaaaggaagttaccactgtgaaagtcaaagcatttattgtcactttaactggaaatctctcaagttccggtggcttttggtgtgtgactgcaaaggtttctgatggtactgcatatctagatgtagattttatagatgaaatacttaccagtatgatagggtattcagtaccagaaatgaaacagttaaaaaaggaccctcttaaatataaaaaattcctagaagggttacaaaaatgccagcgagatctgatagatttgtgttgcctaatgactgtttcatatgatccgtcttcgtgtaaaggcatggtactggaattgcaagatgttggtgtggaacacctcgagaacctaaagaagcggttgaataaataattgccagaatactattggagcacacttttaaaacaggcaaatatttggaatcaaatttgtttgttctcaattttggaattctgtaaaagaaaaagcttcagagcttaaaaatggctgaggcagctcagtggtggtttctgccaggtgtggtgacctgagtttgatctcctggtcccttgaggcaaaaggagagacccagcttcagcttccagaatctgttgttagtcctctacacaggtagcataggacacacacagttggtaaatgatgtttaaaaataaagatatttaatcaaaaatgta
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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