GGRNA | Results

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Homo sapiens pannexin 1 (PANX1), transcript variant X2, mRNA. (2283 bp)

ttacttcagcctctcctcactctcagacgagtttgtgtgcagcatcaaatcagggatcctgagaaacgacagcaccgtgcccgatcagtttcagtgcaaactcattgccgtgggcatcttccagttgctcagtgtcattaaccttgtggtttatgtcctgctggctcccgtggttgtctacacgctgtttgttccattccgacagaagacagatgttctcaaagtgtacgaaatcctccccacttttgatgttctgcatttcaaatctgaagggtacaacgatttgagcctctacaatctcttcttggaggaaaatataagtgaggtcaagtcatacaagtgtcttaaggtactggagaatattaagagcagtggtcaggggatcgacccaatgctactcctgacaaaccttggcatgatcaagatggatgttgttgatggcaaaactcccatgtctgcagagatgagagaggagcaggggaaccagacggcagagctccaaggtatgaacatagacagtgaaactaaagcaaataatggagagaagaatgcccgacagagacttctggattcttcttgctgatgatttttttccttgag...

position 896

Synonym: MRS1; OOMD7; OZEMA7; PX1; UNQ2529
XM_054368281.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

PREDICTED: Homo sapiens pannexin 1 (PANX1), transcript variant X2, mRNA. (2283 bp)

position 896

Synonym: MRS1; OOMD7; OZEMA7; PX1; UNQ2529
XM_047426702.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

Homo sapiens pannexin 1 (PANX1), mRNA. (2852 bp)

position 1465

Synonym: MRS1; OOMD7; OZEMA7; PX1; UNQ2529
NM_015368.4 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

PREDICTED: Homo sapiens pannexin 1 (PANX1), transcript variant X1, mRNA. (2373 bp)

position 986

Synonym: MRS1; OOMD7; OZEMA7; PX1; UNQ2529
XM_054368280.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

PREDICTED: Homo sapiens pannexin 1 (PANX1), transcript variant X1, mRNA. (2373 bp)

position 986

Synonym: MRS1; OOMD7; OZEMA7; PX1; UNQ2529
XM_011542734.3 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

PREDICTED: Homo sapiens uncharacterized lncRNA (LOC124900807), ncRNA. (5660 bp)

tgtacaaagaatacgagcctggattgtgtgctaaattcctgcttttgctcacttaccccttatagacagcataaaggaggactcttggtcagatatttgtagaggtggctatagttccctttatttgcctaaacttgctgagtttcttaagagggatgcaatgggtgttcaaatggaacaattctcaccgtggtggcttcagtattgcaaggtgttaaacaccccatcctactaaatgccacaatcactttccatccattgtgatacccaccatgtgataactctgcacatttccaatctcttcttggaaagtggtatacgcatacacccctgaagtcttcccctagccccagccaccaccatataagaaccactggcctaggatatgtgggttcggttatctgaatctcaattacagaaaatcaacagcacttctggtagtagaaggtaacccagttaagaattaaaaagtatagactgtagtttgaatactgaatcttttggaaaatcattgaattatttgaacctcagtttactcatctattaagtggtaatccaccctctctcccatttaagccacttaattcttgtgaaaatcaa...

position 2268

XR_007058359.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

PREDICTED: Homo sapiens uncharacterized lncRNA (LOC124900807), ncRNA. (5661 bp)

tgtacaaagaatacgagcctggattgtgtgctaaattcctgcttttgctcacttaccccttatagacagcataaaggaggactcttggtcagatatttgtagaggtggctatagttccctttatttgcctaaacttgctgagtttcttaagagggatgcaatgggtgttcaaatggaacaattctcaccgtggtggcttcagtattgcaaggtgttaaacaccccatcctactaaatgccacaatcacttttcatccattgtgatacccaccatgtgataactctgcacatttccaatctcttcttggaaagtggtatacgcatacacccctgaagtcttcccctagccccagccaccaccatataagaaccactggcctaggatatgtgggttcggttatctgaatctcaattacagaaaatcaacagcacttctggtagtagaaggtaacccagttaagaattaagaagtatagactgtagtttgaatactgaatcttttggaaaatcattgaattatttgaacctcagtttactcatctattaagtggtaatccaccctctctcccatttaagccacttaattcttgtgaaaatcaa...

position 2269

XR_007075129.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

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Debug Info:

0.000 | 0.000 | search_start;
0.078 | 0.078 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:caatctcttcttg)?source=Homo sapiens (human)?to=0&format=json
0.146 | 0.067 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:caatctcttcttg)?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.147 | 0.001 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

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