ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2025-08-21 19:02:52, GGRNA.v2 : RefSeq release 230 (May, 2025)
LOCUS NM_001438370 9034 bp mRNA linear PRI 18-APR-2025
DEFINITION Homo sapiens transforming acidic coiled-coil containing protein 2
(TACC2), transcript variant 15, mRNA.
ACCESSION NM_001438370 XM_047424464 XM_054364540
VERSION NM_001438370.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 9034)
AUTHORS Ito,S., Takuwa,H., Kakehi,S., Someya,Y., Kaga,H., Kumahashi,N.,
Kuwata,S., Wakatsuki,T., Kadowaki,M., Yamamoto,S., Abe,T.,
Takeda,M., Ishikawa,Y., Liu,X., Otomo,N., Suetsugu,H., Koike,Y.,
Hikino,K., Tomizuka,K., Momozawa,Y., Ozaki,K., Isomura,M.,
Nabika,T., Kaneko,H., Ishijima,M., Kawamori,R., Watada,H.,
Tamura,Y., Uchio,Y., Ikegawa,S. and Terao,C.
TITLE A genome-wide association study identifies a locus associated with
knee extension strength in older Japanese individuals
JOURNAL Commun Biol 7 (1), 513 (2024)
PUBMED 38769351
REMARK GeneRIF: A genome-wide association study identifies a locus
associated with knee extension strength in older Japanese
individuals.
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 9034)
AUTHORS Ito,Y., Terao,Y., Noma,S., Tagami,M., Yoshida,E., Hayashizaki,Y.,
Itoh,M. and Kawaji,H.
TITLE Nanopore sequencing reveals TACC2 locus complexity and diversity of
isoforms transcribed from an intronic promoter
JOURNAL Sci Rep 11 (1), 9355 (2021)
PUBMED 33931666
REMARK GeneRIF: Nanopore sequencing reveals TACC2 locus complexity and
diversity of isoforms transcribed from an intronic promoter.
Erratum:[Sci Rep. 2021 Aug 13;11(1):16835. doi:
10.1038/s41598-021-96196-9. PMID: 34389798]
Publication Status: Online-Only
REFERENCE 3 (bases 1 to 9034)
AUTHORS Mallampalli,R.K., Li,X., Jang,J.H., Kaminski,T., Hoji,A., Coon,T.,
Chandra,D., Welty,S., Teng,Y., Sembrat,J., Rojas,M., Zhao,Y.,
Lafyatis,R., Zou,C., Sciurba,F., Sundd,P., Lan,L. and Nyunoya,T.
TITLE Cigarette smoke exposure enhances transforming acidic
coiled-coil-containing protein 2 turnover and thereby promotes
emphysema
JOURNAL JCI Insight 5 (2), 125895 (2020)
PUBMED 31996486
REMARK GeneRIF: Cigarette smoke exposure enhances transforming acidic
coiled-coil-containing protein 2 turnover and thereby promotes
emphysema.
Publication Status: Online-Only
REFERENCE 4 (bases 1 to 9034)
AUTHORS Shakya,M., Zhou,A., Dai,D., Zhong,Q., Zhou,Z., Zhang,Y., Li,X.,
Bholee,A.K. and Chen,M.
TITLE High expression of TACC2 in hepatocellular carcinoma is associated
with poor prognosis
JOURNAL Cancer Biomark 22 (4), 611-619 (2018)
PUBMED 29843208
REMARK GeneRIF: This finding suggests that TACC2 may be a useful tool as a
candidate biomarker to predict the recurrence and prognosis of
hepatocellular carcinoma.
REFERENCE 5 (bases 1 to 9034)
AUTHORS Yoshida,E., Terao,Y., Hayashi,N., Mogushi,K., Arakawa,A.,
Tanaka,Y., Ito,Y., Ohmiya,H., Hayashizaki,Y., Takeda,S., Itoh,M.
and Kawaji,H.
TITLE Promoter-level transcriptome in primary lesions of endometrial
cancer identified biomarkers associated with lymph node metastasis
JOURNAL Sci Rep 7 (1), 14160 (2017)
PUBMED 29074988
REMARK GeneRIF: TACC2 protein is expressed mainly in the nucleus of the
endometrial cancer cells.
Publication Status: Online-Only
REFERENCE 6 (bases 1 to 9034)
AUTHORS Gergely,F., Karlsson,C., Still,I., Cowell,J., Kilmartin,J. and
Raff,J.W.
TITLE The TACC domain identifies a family of centrosomal proteins that
can interact with microtubules
JOURNAL Proc Natl Acad Sci U S A 97 (26), 14352-14357 (2000)
PUBMED 11121038
REFERENCE 7 (bases 1 to 9034)
AUTHORS Chen,H.M., Schmeichel,K.L., Mian,I.S., Lelievre,S., Petersen,O.W.
and Bissell,M.J.
TITLE AZU-1: a candidate breast tumor suppressor and biomarker for tumor
progression
JOURNAL Mol Biol Cell 11 (4), 1357-1367 (2000)
PUBMED 10749935
REFERENCE 8 (bases 1 to 9034)
AUTHORS Gergely,F., Kidd,D., Jeffers,K., Wakefield,J.G. and Raff,J.W.
TITLE D-TACC: a novel centrosomal protein required for normal spindle
function in the early Drosophila embryo
JOURNAL EMBO J 19 (2), 241-252 (2000)
PUBMED 10637228
REFERENCE 9 (bases 1 to 9034)
AUTHORS Still,I.H., Hamilton,M., Vince,P., Wolfman,A. and Cowell,J.K.
TITLE Cloning of TACC1, an embryonically expressed, potentially
transforming coiled coil containing gene, from the 8p11 breast
cancer amplicon
JOURNAL Oncogene 18 (27), 4032-4038 (1999)
PUBMED 10435627
REFERENCE 10 (bases 1 to 9034)
AUTHORS Still,I.H., Vince,P. and Cowell,J.K.
TITLE The third member of the transforming acidic coiled coil-containing
gene family, TACC3, maps in 4p16, close to translocation
breakpoints in multiple myeloma, and is upregulated in various
cancer cell lines
JOURNAL Genomics 58 (2), 165-170 (1999)
PUBMED 10366448
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from AC063960.10 and AL135793.13.
On or before Apr 18, 2025 this sequence version replaced
XM_047424464.1, XM_054364540.1.
Summary: Transforming acidic coiled-coil proteins are a conserved
family of centrosome- and microtubule-interacting proteins that are
implicated in cancer. This gene encodes a protein that concentrates
at centrosomes throughout the cell cycle. This gene lies within a
chromosomal region associated with tumorigenesis. Expression of
this gene is induced by erythropoietin and is thought to affect the
progression of breast tumors. Several transcript variants encoding
different isoforms have been found for this gene. [provided by
RefSeq, Jul 2008].
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: SRR14038193.2764473.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA1968540, SAMEA1968832
[ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-148 AC063960.10 169762-169909 c
149-226 AC063960.10 167629-167706 c
227-339 AC063960.10 139093-139205 c
340-5652 AC063960.10 101684-106996 c
5653-5766 AC063960.10 101052-101165 c
5767-5903 AL135793.13 37085-37221
5904-7215 AL135793.13 52442-53753
7216-7276 AL135793.13 57436-57496
7277-7478 AL135793.13 58672-58873
7479-7540 AL135793.13 66771-66832
7541-7656 AL135793.13 68411-68526
7657-7828 AL135793.13 69882-70053
7829-7972 AL135793.13 79440-79583
7973-8049 AL135793.13 80006-80082
8050-8093 AL135793.13 84003-84046
8094-8254 AL135793.13 90688-90848
8255-8361 AL135793.13 91095-91201
8362-8482 AL135793.13 91589-91709
8483-9034 AL135793.13 96036-96587
FEATURES Location/Qualifiers
source 1..9034
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="10"
/map="10q26.13"
gene 1..9034
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="transforming acidic coiled-coil containing protein
2"
/db_xref="GeneID:10579"
/db_xref="HGNC:HGNC:11523"
/db_xref="MIM:605302"
exon 1..148
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 149..226
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
misc_feature 185..187
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="upstream in-frame stop codon"
CDS 194..8548
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="isoform m is encoded by transcript variant 15; anti
zuai-1"
/codon_start=1
/product="transforming acidic coiled-coil-containing
protein 2 isoform m"
/protein_id="NP_001425299.1"
/db_xref="GeneID:10579"
/db_xref="HGNC:HGNC:11523"
/db_xref="MIM:605302"
/translation="
MGNENSTSDNQRTLSAQTPRSAQPPGNSQNIKRKQQDTPGSPDHRDASSIGSVGLGGFCTASESSASLDPCLVSPEVTEPRKDPQGARGPEGSLLPSPPPSQEREHPSSSMPFAECPPEGCLASPAAAPEDGPQTQSPRREPAPNAPGDIAAAFPAERDSSTPYQEIAAVPSAGRERQPKEEGQKSSFSFSSGIDQSPGMSPVPLREPMKAPLCGEGDQPGGFESQEKEAAGGFPPAESRQGVASVQVTPEAPAAAQQGTESSAVLEKSPLKPMAPIPQDPAPRASDRERGQGEAPPQYLTDDLEFLRACHLPRSNSGAAPEAEVNAASQESCQQPVGAYLPHAELPWGLPSPALVPEAGGSGKEALDTIDVQGHPQTGMRGTKPNQVVCVAAGGQPEGGLPVSPEPSLLTPTEEAHPASSLASFPAAQIPIAVEEPGSSSRESVSKAGMPVSADAAKEVVDAGLVGLERQVSDLGSKGEHPEGDPGEVPAPSPQERGEHLNTEQSHEVQPGVPPPPLPKEQSHEVQPGAPPPPLPKAPSESARGPPGPTDGAKVHEDSTSPAVAKEGSRSPGDSPGGKEEAPEPPDGGDPGNLQGEDSQAFSSKRDPEVGKDELSKPSSDAESRDHPSSHSAQPPRKGGAGHTDGPHSQTAEADASGLPHKLGEEDPVLPPVPDGAGEPTVPEGAIWEGSGLQPKCPDTLQSREGLGRMESFLTLESEKSDFPPTPVAEVAPKAQEGESTLEIRKMGSCDGEGLLTSPDQPRGPACDASRQEFHAGVPHPPQGENLAADLGLTALILDQDQQGIPSCPGEGWIRGAASEWPLLSSEKHLQPSQAQPETSIFDVLKEQAQPPENGKETSPSHPGFKDQGADSSQIHVPVEPQEDNNLPTHGGQEQALGSELQSQLPKGTLSDTPTSSPTDMVWESSLTEESELSAPTRQKLPALGEKRPEGACGDGQSSRVSPPAADVLKDFSLAGNFSRKETCCTGQGPNKSQQALADALEEGSQHEEACQRHPGASEAADGCSPLWGLSKREMASGNTGEAPPCQPDSVALLDAVPCLPALAPASPGVTPTQDAPETEACDETQEGRQQPVPAPQQKMECWATSDAESPKLLASFPSAGEQGGEAGAAETGGSAGAGDPGKQQAPEKPGEATLSCGLLQTEHCLTSGEEASTSALRESCQAEHPMASCQDALLPARELGGIPRSTMDFSTHQAVPDPKELLLSGPPEVAAPDTPYLHVDSAAQRGAEDSGVKAVSSADPRAPGESPCPVGEPPLALENAASLKLFAGSLAPLLQPGAAGGEIPAVQASSGSPKARTTEGPVDSMPCLDRMPLLAKGKQATGEEKAATAPGAGAKASGEGMAGDAAGETEGSMERMGEPSQDPKQGTSGGVDTSSEQIATLTGFPDFREHIAKIFEKPVLGALATPGEKAGAGRSAVGKDLTRPLGPEKLLDGPPGVDVTLLPAPPARLQVEKKQQLAGEAEISHLALQDPASDKLLGPAGLTWERNLPGAGVGKEMAGVPPTLREDERPEGPGAAWPGLEGQAYSQLERSRQELASGLPSPAATQELPVERAAAFQVAPHSHGEEAVAQDRIPSGKQHQETSACDSPHGEDGPGDFAHTGVPGHVPRSTCAPSPQREVLTVPEANSEPWTLDTLGGERRPGVTAGILEMRNALGNQSTPAPPTGEVADTPLEPGKVAGAAGEAEGDITLSTAETQACASGDLPEAGTTRTFSVVAGDLVLPGSCQDPACSDKAPGMEGTAALHGDSPARPQQAKEQPGPERPIPAGDGKVCVSSPPEPDETHDPKLQHLAPEELHTDRESPRPGPSMLPSVPKKDAPRVMDKVTSDETRGAEGTERSSDSEEAFETPESTTPVKAPPAPPPPPPEVIPEPEVSTQPPPEEPGCGSETVPVPDGPRSDSVEGSPFRPPSHSFSAVFDEDKPIASSGTYNLDFDNIELVDTFQTLEPRASDAKNQEGKVNTRRKSTDSVPISKSTLSRSLSLQASDFDGASSSGNPEAVALAPDAYSTGSSSASSTLKRTKKPRPPSLKKKQTTKKPTETPPVKETQQEPDEESLVPSGENLASETKTESAKTEGPSPALLEETPLEPAVGPKAACPLDSESAEGVVPPASGGGRVQNSPPVGRKTLPLTTAPEAGEVTPSDSGGQEDSPAKGLSVRLEFDYSEDKSSWDNQQENPPPTKKIGKKPVAKMPLRRPKMKKTPEKLDNTPASPPRSPAEPNDIPIAKGTYTFDIDKWDDPNFNPFSSTSKMQESPKLPQQSYNFDPDTCDESVDPFKTSSKTPSSPSKSPASFEIPASAMEANGVDGDGLNKPAKKKKTPLKTDTFRVKKSPKRSPLSDPPSQDPTPAATPETPPVISAVVHATDEEKLAVTNQKWTCMTVDLEADKQDYPQPSDLSTFVNETKFSSPTEELDYRNSYEIEYMEKIGSSLPQDDDAPKKQALYLMFDTSQESPVKSSPVRMSESPTPCSGSSFEETEALVNTAAKNQHPVPRGLAPNQESHLQVPEKSSQKELEAMGLGTPSEAIEIREAAHPTDVSISKTALYSRIGTAEVEKPAGLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIEDEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKRCAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAHQASLRKEQLRVDALERTLEQKNKEIEELTKICDELIAKMGKS"
misc_feature 194..1105
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 782..784
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648,
ECO:0007744|PubMed:20068231; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 794..796
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648,
ECO:0007744|PubMed:20068231; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 998..1000
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:20068231; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 1133..1192
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1166..1168
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphothreonine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 1367..1552
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1586..2548
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1670..1672
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:20068231; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 1874..1876
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:20068231; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 1904..1906
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 1916..1918
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 2465..2467
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 2666..3085
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 3077..3079
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 3146..3343
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 3266..3268
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 3377..3655
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 3920..4015
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 3992..3994
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 4079..4393
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 4130..4132
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 4472..4582
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 4670..5176
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 4877..4879
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 5216..5308
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
exon 227..339
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 340..5652
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 5653..5766
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 5767..5903
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 5904..7215
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 7216..7276
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 7277..7478
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 7479..7540
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 7541..7656
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 7657..7828
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 7829..7972
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 7973..8049
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 8050..8093
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 8094..8254
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 8255..8361
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 8362..8482
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 8483..9034
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
regulatory 8676..8681
/regulatory_class="polyA_signal_sequence"
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="hexamer: AATAAA"
polyA_site 8703
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
regulatory 9006..9011
/regulatory_class="polyA_signal_sequence"
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="hexamer: AATAAA"
polyA_site 9034
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="major polyA site"
ORIGIN
agtgcgagggcggagacgcgctgcttgaggtgtgtcagggcctctgcttagaactcgcgcaattctgaacggaggaggagaaagtccagttgctgaagggcagaatttccatgcgcccgcagcttccaagtccagaccacccccgaattcacctctgacaaaattctggggacgctgggaacactgaatcaacatgggcaatgagaacagcacctcggacaaccagaggactttatcagctcagactccaaggtccgcgcagccacccgggaacagtcagaatataaaaaggaagcagcaggacacgcccggaagccctgaccacagagacgcgtccagcattggcagcgttgggcttggaggcttctgcaccgcttctgagagttctgccagcctggatccatgccttgtgtccccagaggtgactgagccaaggaaggacccacagggagccagggggccagaaggttctttgctgcccagcccaccaccgtcccaggagcgagagcacccctcgtcctccatgccctttgccgagtgtcccccggaaggttgcttggcaagtccagcagcggcacctgaagatggtcctcagactcagtctcccaggagggaacctgccccaaatgccccaggagacatcgcggcggcatttcccgctgagagggacagctctactccataccaagagattgctgccgtccccagtgctggaagagagagacagccgaaggaagaaggacagaagtcctccttctccttctccagtggcatcgaccagtcacctggaatgtcgccagtacccctcagagagccaatgaaggcaccgctgtgtggagagggggaccagcctggtggttttgagtcccaagagaaagaggctgcaggtggctttccccctgcagagtccaggcagggggtggcttctgtgcaagtgacccctgaggcccctgctgcagcccagcagggcacagaaagctcagcggtcttggagaagtcccccctaaaacccatggccccgatcccacaagatccagccccaagagcctcagacagagaaagaggccaaggggaggcgccgcctcagtatttaacagatgacttggaattcctcagggcctgccatctccctaggagcaattcaggggctgccccagaagcagaagtgaatgccgcttcccaggagagctgccagcagccagtgggagcatatctgccgcacgcagagctgccctggggcttgccaagtcctgccctggtgccagaggctgggggctctgggaaggaggctctggacaccattgatgttcagggtcacccacagacagggatgcgaggaaccaagcccaatcaagttgtctgtgtggcagcaggcggccagcccgaagggggtttgcctgtgagccctgaaccttccctgctcactccgactgaggaagcacatccagcttcaagcctcgcttcattcccagctgctcagattcctattgctgtagaagaacctggatcatcatccagggaatcagtttccaaggctgggatgccagtttctgcagatgcagccaaagaggtggtggatgcagggttggtgggactggagaggcaggtgtcagatcttggaagcaagggagagcatccagaaggggaccctggagaggttcctgccccatcaccccaggagaggggagagcacttgaacacggagcaaagccatgaggtccaaccaggagtaccaccccctcctcttcccaaggagcaaagccatgaggtccaaccaggagcaccaccccctcctcttcccaaggcaccaagtgaaagtgccagagggccaccggggccaacggatggagccaaggtccatgaagattccacaagcccagccgtggctaaagaaggaagcagatcacctggtgacagccctggaggaaaggaggaagccccagagccacctgatggtggagacccagggaacctgcaaggagaggactctcaggctttcagcagcaagcgtgatccagaagtaggcaaagatgagctttcaaagccaagcagtgatgcagagagcagagaccatcccagctcacactcagcacagccacccagaaaggggggtgctgggcacacggacgggccccactctcagacagcagaggctgatgcatctggcctaccacacaagctgggtgaggaggaccccgtcctgccccctgtgccagatggagctggtgagcccactgttcccgaaggagccatctgggaggggtcaggattgcagcccaaatgtcctgacacccttcagagcagggaaggattgggaagaatggagtctttcctgactttagaatcagagaaatcagattttccaccaactcctgttgcagaggttgcacccaaagcccaggaaggtgagagcacattggaaataaggaagatgggcagctgtgatggggagggcttgctgacgtccccagatcaaccccgcgggccggcgtgtgatgcgtcgagacaggaatttcatgctggggtgccacatcccccccagggggagaacttggcagcagacctggggctcacggcactcatcctggaccaagatcagcagggaatcccatcctgcccaggggaaggctggataagaggagctgcatccgagtggcccctactatcttctgagaagcatctccagccatcccaggcacaaccagagacatccatctttgacgtgctcaaggagcaggcccagccacctgaaaatgggaaagagacttctccaagccatccaggttttaaggaccagggagcagattcttcccaaatccatgtacctgtggaacctcaggaagataacaacttgcccactcatggaggacaggagcaggctttgggatcagaacttcaaagtcagctccccaaaggcaccctgtctgatactccaacttcatctcccactgacatggtttgggagagttctctgacagaagagtcagaattgtcagcaccaacgagacagaagttgcctgcactaggggagaagcggccagagggagcatgcggtgatggtcagtcctcgagggtctcgcctccagcagcagatgtcttaaaagacttttctcttgcagggaacttcagcagaaaggaaacttgctgcactgggcaggggccaaacaagtctcaacaggcattggctgatgccttggaagaaggcagccagcatgaagaagcatgtcaaaggcatccaggagcttctgaagcagctgatggttgttccccactctggggcttgagtaagagggagatggcaagtggaaacacaggggaggccccaccttgtcagcctgactcagtagctctcctggatgcagttccctgcctgccagccctggcgcccgccagccccggagtcacacccacccaggatgccccagagacagaggcatgtgatgaaacccaggaaggcaggcagcaaccagtgccggccccgcagcagaaaatggagtgctgggccacttcggatgcagagtccccaaagcttcttgcaagtttcccatcagctggggagcaaggtggtgaagccggggctgctgagactggtggcagcgctggtgcaggagacccaggaaagcagcaggctccggagaaacctggagaagctactttgagttgtggcctccttcagactgagcactgccttacctccggggaggaagcttctacctctgccctacgtgagtcctgccaagctgagcaccccatggccagctgccaggatgccttgctgccagccagagagctgggtgggattcccaggagcaccatggatttttctacacaccaggctgtcccagacccaaaggagctcctgctgtctgggccaccagaagtggctgctcctgacaccccttacctgcatgtcgacagtgctgcccagagaggagcagaagacagtggagtgaaagctgtttcctctgcagaccccagagctcctggcgaaagcccctgtcctgtaggggagcccccacttgccttggaaaatgctgcctccttgaagctgtttgctggctccctcgcccccctgttgcaaccaggagctgcaggtggggaaatccctgcagtgcaagccagcagtggtagtcccaaagccagaaccactgagggaccagtggactccatgccatgcctggaccggatgccacttctggccaagggcaagcaggcaacaggggaagagaaagcagcaacagctccaggtgcaggtgccaaggccagtggggagggcatggcaggtgatgcagcaggagagacagagggcagcatggagaggatgggagagccttcccaggacccaaagcagggcacatcaggtggtgtggacacaagctctgagcaaatcgccaccctcactggcttcccagacttcagggagcacatcgccaagatcttcgagaagcctgtgctcggagccctggccacacctggagaaaaggcaggagctgggaggagtgcagtgggtaaagacctcaccaggccattgggcccagagaagcttctagatgggcctccaggagtggatgtcacccttctccctgcacctcctgctcgactccaggtggagaagaagcaacagttggctggagaggctgagatttcccatctggctctgcaagatccagcttcagacaagcttctgggtccagcagggctgacctgggagcggaacttgccaggtgccggtgtggggaaggagatggcaggtgtcccacccacactgagggaagacgagaggccagaggggcctggggcagcctggccaggcctggaaggccaggcttactcacagctggagaggagcaggcaggaattagcttcaggtcttccttcaccagcagctactcaggagctccctgtggagagagctgctgccttccaggtggctccccatagccatggagaagaggccgtggcccaagacagaattccttctggaaagcagcaccaggaaacatctgcctgcgacagtccacatggagaagatggtcccggggactttgctcacacaggggttccaggacatgtgccaaggtccacgtgtgccccttctcctcagagggaggttttgactgtgcctgaggccaacagtgagccctggacccttgacacgcttgggggtgaaaggagacccggagtcactgctggcatcttggaaatgcgaaatgccctgggcaaccagagcacccctgcaccaccaactggagaagtggcagacactcccctggagcctggcaaggtggcaggcgctgctggggaagcagagggtgacatcaccctgagcacagctgagacacaggcatgtgcgtccggtgatctgcctgaagcaggtactacgaggacattctccgttgtggcaggtgacttggtgctgccaggaagctgtcaggacccagcctgctctgacaaggctccggggatggagggtacagctgcccttcatggggacagcccagccaggccccagcaggctaaggagcagccagggcctgagcgccccattccagctggggatgggaaggtgtgcgtctcctcacctccagagcctgacgaaactcacgacccgaagctgcaacatttggctccagaagagctccacactgacagagagagccccaggcctggcccatccatgttaccttcggttcctaagaaggatgctccaagagtcatggataaagtcacttcagatgagaccagaggtgcggaaggaacagaaaggagttccgattctgaagaggcatttgagaccccggagtcaacgacccctgtcaaagctccgccagctccacccccaccaccccccgaagtcatcccagaacccgaggtcagcacacagccacccccggaagaaccaggatgtggttctgagacagtccctgtccctgatggcccacggagcgactcggtggaaggaagtcccttccgtcccccgtcacactccttctctgccgtcttcgatgaagacaagccgatagccagcagtgggacttacaacttggactttgacaacattgagcttgtggatacctttcagaccttggagcctcgtgcctcagacgctaagaatcaggagggcaaagtgaacacacggaggaagtccacggattccgtccccatctctaagtctacactgtcccggtcgctcagcctgcaagccagtgactttgatggtgcttcttcctcaggcaatcccgaggccgtggcccttgccccagatgcatatagcacgggttccagcagtgcttctagtacccttaagcgaactaaaaaaccgaggccgccttccttaaaaaagaaacagaccaccaagaaacccacagagacccccccagtgaaggagacgcaacaggagccagatgaagagagccttgtccccagtggggagaatctagcatctgagacgaaaacggaatctgccaagacggaaggtcctagcccagccttattggaggagacgccccttgagcccgctgtggggcccaaagctgcctgccctctggactcagagagtgcagaaggggttgtccccccggcttctggaggtggcagagtgcagaactcaccccctgtcgggaggaaaacgctgcctcttaccacggccccggaggcaggggaggtaaccccatcggatagcggggggcaagaggactctccagccaaagggctctccgtaaggctggagtttgactattctgaggacaagagtagttgggacaaccagcaggaaaacccccctcctaccaaaaagataggcaaaaagccagttgccaaaatgcccctgaggaggccaaagatgaaaaagacacccgagaaacttgacaacactcctgcctcacctcccagatcccctgctgaacccaatgacatccccattgctaaaggtacttacacctttgatattgacaagtgggatgaccccaattttaaccctttttcttccacctcaaaaatgcaggagtctcccaaactgccccaacaatcatacaactttgacccagacacctgtgatgagtccgttgacccctttaagacatcctctaagacccccagctcaccttctaaatccccagcctcctttgagatcccagccagtgctatggaagccaatggagtggacggggatgggctaaacaagcccgccaagaagaagaagacgcccctaaagactgacacatttagggtgaaaaagtcgccaaaacggtctcctctctctgatccaccttcccaggaccccaccccagctgctacaccagaaacaccaccagtgatctctgcggtggtccacgccacagatgaggaaaagctggcggtcaccaaccagaagtggacgtgcatgacagtggacctagaggctgacaaacaggactacccgcagccctcggacctgtccacctttgtaaacgagaccaaattcagttcacccactgaggagttggattacagaaactcctatgaaattgaatatatggagaaaattggctcctccttacctcaggacgacgatgccccgaagaagcaggccttgtaccttatgtttgacacttctcaggagagccctgtcaagtcatctcccgtccgcatgtcagagtccccgacgccgtgttcagggtcaagttttgaagagactgaagcccttgtgaacactgctgcgaaaaaccagcatcctgtcccacgaggactggcccctaaccaagagtcacacttgcaggtgccagagaaatcctcccagaaggagctggaggccatgggcttgggcaccccttcagaagcgattgaaattagagaggctgctcacccaacagacgtctccatctccaaaacagccttgtactcccgcatcgggaccgctgaggtggagaaacctgcaggccttctgttccagcagcccgacctggactctgccctccagatcgccagagcagagatcataaccaaggagagagaggtctcagaatggaaagataaatatgaagaaagcaggcgggaagtgatggaaatgaggaaaatagtggccgagtatgagaagaccatcgctcagatgatagaggacgaacagagagagaagtcagtctcccaccagacggtgcagcagctggttctggagaaggagcaagccctggccgacctgaactccgtggagaagtctctggccgacctcttcagaagatatgagaagatgaaggaggtcctagaaggcttccgcaagaatgaagaggtgttgaagagatgtgcgcaggagtacctgtcccgggtgaagaaggaggagcagaggtaccaggccctgaaggtgcacgcggaggagaaactggacagggccaatgctgagattgctcaggttcgaggcaaggcccagcaggagcaagccgcccaccaggccagcctgcggaaggagcagctgcgagtggacgccctggaaaggacgctggagcagaagaataaagaaatagaagaactcaccaagatttgtgacgaactgattgccaaaatggggaaaagctaactctgaaccgaatgttttggacttaactgttgcgtgcaatatgaccgtcggcacactgctgttcctccagttccatggacaggttctgttttcactttttcgtatgcactactgtatttcctttctaaataaaattgatttgattgtatgcagtactaaggagactatcagaatttcttgctattggtttgcattttcctagtataattcatagcaagttgacctcagagttcctgtatcagggagattgtctgattctctaataaaagacacattgctgaccttggccttgccctttgtacacaagttcccagggtgagcagcttttggatttaatatgaacatgtacagcgtgcatagggactcttgccttaaggagtgtaaacttgatctgcatttgctgatttgtttttaaaaaaacaagaaatgcatgtttcaaataaaattctctattgtaaataaaattttttctttggatcttggcaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]