ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2025-08-21 19:02:52, GGRNA.v2 : RefSeq release 230 (May, 2025)
LOCUS NM_001438369 9212 bp mRNA linear PRI 18-APR-2025
DEFINITION Homo sapiens transforming acidic coiled-coil containing protein 2
(TACC2), transcript variant 14, mRNA.
ACCESSION NM_001438369 XM_047424465 XM_054364541
VERSION NM_001438369.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 9212)
AUTHORS Ito,S., Takuwa,H., Kakehi,S., Someya,Y., Kaga,H., Kumahashi,N.,
Kuwata,S., Wakatsuki,T., Kadowaki,M., Yamamoto,S., Abe,T.,
Takeda,M., Ishikawa,Y., Liu,X., Otomo,N., Suetsugu,H., Koike,Y.,
Hikino,K., Tomizuka,K., Momozawa,Y., Ozaki,K., Isomura,M.,
Nabika,T., Kaneko,H., Ishijima,M., Kawamori,R., Watada,H.,
Tamura,Y., Uchio,Y., Ikegawa,S. and Terao,C.
TITLE A genome-wide association study identifies a locus associated with
knee extension strength in older Japanese individuals
JOURNAL Commun Biol 7 (1), 513 (2024)
PUBMED 38769351
REMARK GeneRIF: A genome-wide association study identifies a locus
associated with knee extension strength in older Japanese
individuals.
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 9212)
AUTHORS Ito,Y., Terao,Y., Noma,S., Tagami,M., Yoshida,E., Hayashizaki,Y.,
Itoh,M. and Kawaji,H.
TITLE Nanopore sequencing reveals TACC2 locus complexity and diversity of
isoforms transcribed from an intronic promoter
JOURNAL Sci Rep 11 (1), 9355 (2021)
PUBMED 33931666
REMARK GeneRIF: Nanopore sequencing reveals TACC2 locus complexity and
diversity of isoforms transcribed from an intronic promoter.
Erratum:[Sci Rep. 2021 Aug 13;11(1):16835. doi:
10.1038/s41598-021-96196-9. PMID: 34389798]
Publication Status: Online-Only
REFERENCE 3 (bases 1 to 9212)
AUTHORS Mallampalli,R.K., Li,X., Jang,J.H., Kaminski,T., Hoji,A., Coon,T.,
Chandra,D., Welty,S., Teng,Y., Sembrat,J., Rojas,M., Zhao,Y.,
Lafyatis,R., Zou,C., Sciurba,F., Sundd,P., Lan,L. and Nyunoya,T.
TITLE Cigarette smoke exposure enhances transforming acidic
coiled-coil-containing protein 2 turnover and thereby promotes
emphysema
JOURNAL JCI Insight 5 (2), 125895 (2020)
PUBMED 31996486
REMARK GeneRIF: Cigarette smoke exposure enhances transforming acidic
coiled-coil-containing protein 2 turnover and thereby promotes
emphysema.
Publication Status: Online-Only
REFERENCE 4 (bases 1 to 9212)
AUTHORS Shakya,M., Zhou,A., Dai,D., Zhong,Q., Zhou,Z., Zhang,Y., Li,X.,
Bholee,A.K. and Chen,M.
TITLE High expression of TACC2 in hepatocellular carcinoma is associated
with poor prognosis
JOURNAL Cancer Biomark 22 (4), 611-619 (2018)
PUBMED 29843208
REMARK GeneRIF: This finding suggests that TACC2 may be a useful tool as a
candidate biomarker to predict the recurrence and prognosis of
hepatocellular carcinoma.
REFERENCE 5 (bases 1 to 9212)
AUTHORS Yoshida,E., Terao,Y., Hayashi,N., Mogushi,K., Arakawa,A.,
Tanaka,Y., Ito,Y., Ohmiya,H., Hayashizaki,Y., Takeda,S., Itoh,M.
and Kawaji,H.
TITLE Promoter-level transcriptome in primary lesions of endometrial
cancer identified biomarkers associated with lymph node metastasis
JOURNAL Sci Rep 7 (1), 14160 (2017)
PUBMED 29074988
REMARK GeneRIF: TACC2 protein is expressed mainly in the nucleus of the
endometrial cancer cells.
Publication Status: Online-Only
REFERENCE 6 (bases 1 to 9212)
AUTHORS Gergely,F., Karlsson,C., Still,I., Cowell,J., Kilmartin,J. and
Raff,J.W.
TITLE The TACC domain identifies a family of centrosomal proteins that
can interact with microtubules
JOURNAL Proc Natl Acad Sci U S A 97 (26), 14352-14357 (2000)
PUBMED 11121038
REFERENCE 7 (bases 1 to 9212)
AUTHORS Chen,H.M., Schmeichel,K.L., Mian,I.S., Lelievre,S., Petersen,O.W.
and Bissell,M.J.
TITLE AZU-1: a candidate breast tumor suppressor and biomarker for tumor
progression
JOURNAL Mol Biol Cell 11 (4), 1357-1367 (2000)
PUBMED 10749935
REFERENCE 8 (bases 1 to 9212)
AUTHORS Gergely,F., Kidd,D., Jeffers,K., Wakefield,J.G. and Raff,J.W.
TITLE D-TACC: a novel centrosomal protein required for normal spindle
function in the early Drosophila embryo
JOURNAL EMBO J 19 (2), 241-252 (2000)
PUBMED 10637228
REFERENCE 9 (bases 1 to 9212)
AUTHORS Still,I.H., Hamilton,M., Vince,P., Wolfman,A. and Cowell,J.K.
TITLE Cloning of TACC1, an embryonically expressed, potentially
transforming coiled coil containing gene, from the 8p11 breast
cancer amplicon
JOURNAL Oncogene 18 (27), 4032-4038 (1999)
PUBMED 10435627
REFERENCE 10 (bases 1 to 9212)
AUTHORS Still,I.H., Vince,P. and Cowell,J.K.
TITLE The third member of the transforming acidic coiled coil-containing
gene family, TACC3, maps in 4p16, close to translocation
breakpoints in multiple myeloma, and is upregulated in various
cancer cell lines
JOURNAL Genomics 58 (2), 165-170 (1999)
PUBMED 10366448
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from AL731566.7, AC063960.10 and
AL135793.13.
On or before Apr 18, 2025 this sequence version replaced
XM_047424465.1, XM_054364541.1.
Summary: Transforming acidic coiled-coil proteins are a conserved
family of centrosome- and microtubule-interacting proteins that are
implicated in cancer. This gene encodes a protein that concentrates
at centrosomes throughout the cell cycle. This gene lies within a
chromosomal region associated with tumorigenesis. Expression of
this gene is induced by erythropoietin and is thought to affect the
progression of breast tumors. Several transcript variants encoding
different isoforms have been found for this gene. [provided by
RefSeq, Jul 2008].
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: SRR14038195.444670.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA2142853, SAMEA2153307
[ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-326 AL731566.7 98120-98445
327-404 AC063960.10 167629-167706 c
405-517 AC063960.10 139093-139205 c
518-5830 AC063960.10 101684-106996 c
5831-5944 AC063960.10 101052-101165 c
5945-6081 AL135793.13 37085-37221
6082-7393 AL135793.13 52442-53753
7394-7454 AL135793.13 57436-57496
7455-7656 AL135793.13 58672-58873
7657-7718 AL135793.13 66771-66832
7719-7834 AL135793.13 68411-68526
7835-8006 AL135793.13 69882-70053
8007-8150 AL135793.13 79440-79583
8151-8227 AL135793.13 80006-80082
8228-8271 AL135793.13 84003-84046
8272-8432 AL135793.13 90688-90848
8433-8539 AL135793.13 91095-91201
8540-8660 AL135793.13 91589-91709
8661-9212 AL135793.13 96036-96587
FEATURES Location/Qualifiers
source 1..9212
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="10"
/map="10q26.13"
gene 1..9212
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="transforming acidic coiled-coil containing protein
2"
/db_xref="GeneID:10579"
/db_xref="HGNC:HGNC:11523"
/db_xref="MIM:605302"
exon 1..326
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 327..404
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
misc_feature 363..365
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="upstream in-frame stop codon"
CDS 372..8726
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="isoform m is encoded by transcript variant 14; anti
zuai-1"
/codon_start=1
/product="transforming acidic coiled-coil-containing
protein 2 isoform m"
/protein_id="NP_001425298.1"
/db_xref="GeneID:10579"
/db_xref="HGNC:HGNC:11523"
/db_xref="MIM:605302"
/translation="
MGNENSTSDNQRTLSAQTPRSAQPPGNSQNIKRKQQDTPGSPDHRDASSIGSVGLGGFCTASESSASLDPCLVSPEVTEPRKDPQGARGPEGSLLPSPPPSQEREHPSSSMPFAECPPEGCLASPAAAPEDGPQTQSPRREPAPNAPGDIAAAFPAERDSSTPYQEIAAVPSAGRERQPKEEGQKSSFSFSSGIDQSPGMSPVPLREPMKAPLCGEGDQPGGFESQEKEAAGGFPPAESRQGVASVQVTPEAPAAAQQGTESSAVLEKSPLKPMAPIPQDPAPRASDRERGQGEAPPQYLTDDLEFLRACHLPRSNSGAAPEAEVNAASQESCQQPVGAYLPHAELPWGLPSPALVPEAGGSGKEALDTIDVQGHPQTGMRGTKPNQVVCVAAGGQPEGGLPVSPEPSLLTPTEEAHPASSLASFPAAQIPIAVEEPGSSSRESVSKAGMPVSADAAKEVVDAGLVGLERQVSDLGSKGEHPEGDPGEVPAPSPQERGEHLNTEQSHEVQPGVPPPPLPKEQSHEVQPGAPPPPLPKAPSESARGPPGPTDGAKVHEDSTSPAVAKEGSRSPGDSPGGKEEAPEPPDGGDPGNLQGEDSQAFSSKRDPEVGKDELSKPSSDAESRDHPSSHSAQPPRKGGAGHTDGPHSQTAEADASGLPHKLGEEDPVLPPVPDGAGEPTVPEGAIWEGSGLQPKCPDTLQSREGLGRMESFLTLESEKSDFPPTPVAEVAPKAQEGESTLEIRKMGSCDGEGLLTSPDQPRGPACDASRQEFHAGVPHPPQGENLAADLGLTALILDQDQQGIPSCPGEGWIRGAASEWPLLSSEKHLQPSQAQPETSIFDVLKEQAQPPENGKETSPSHPGFKDQGADSSQIHVPVEPQEDNNLPTHGGQEQALGSELQSQLPKGTLSDTPTSSPTDMVWESSLTEESELSAPTRQKLPALGEKRPEGACGDGQSSRVSPPAADVLKDFSLAGNFSRKETCCTGQGPNKSQQALADALEEGSQHEEACQRHPGASEAADGCSPLWGLSKREMASGNTGEAPPCQPDSVALLDAVPCLPALAPASPGVTPTQDAPETEACDETQEGRQQPVPAPQQKMECWATSDAESPKLLASFPSAGEQGGEAGAAETGGSAGAGDPGKQQAPEKPGEATLSCGLLQTEHCLTSGEEASTSALRESCQAEHPMASCQDALLPARELGGIPRSTMDFSTHQAVPDPKELLLSGPPEVAAPDTPYLHVDSAAQRGAEDSGVKAVSSADPRAPGESPCPVGEPPLALENAASLKLFAGSLAPLLQPGAAGGEIPAVQASSGSPKARTTEGPVDSMPCLDRMPLLAKGKQATGEEKAATAPGAGAKASGEGMAGDAAGETEGSMERMGEPSQDPKQGTSGGVDTSSEQIATLTGFPDFREHIAKIFEKPVLGALATPGEKAGAGRSAVGKDLTRPLGPEKLLDGPPGVDVTLLPAPPARLQVEKKQQLAGEAEISHLALQDPASDKLLGPAGLTWERNLPGAGVGKEMAGVPPTLREDERPEGPGAAWPGLEGQAYSQLERSRQELASGLPSPAATQELPVERAAAFQVAPHSHGEEAVAQDRIPSGKQHQETSACDSPHGEDGPGDFAHTGVPGHVPRSTCAPSPQREVLTVPEANSEPWTLDTLGGERRPGVTAGILEMRNALGNQSTPAPPTGEVADTPLEPGKVAGAAGEAEGDITLSTAETQACASGDLPEAGTTRTFSVVAGDLVLPGSCQDPACSDKAPGMEGTAALHGDSPARPQQAKEQPGPERPIPAGDGKVCVSSPPEPDETHDPKLQHLAPEELHTDRESPRPGPSMLPSVPKKDAPRVMDKVTSDETRGAEGTERSSDSEEAFETPESTTPVKAPPAPPPPPPEVIPEPEVSTQPPPEEPGCGSETVPVPDGPRSDSVEGSPFRPPSHSFSAVFDEDKPIASSGTYNLDFDNIELVDTFQTLEPRASDAKNQEGKVNTRRKSTDSVPISKSTLSRSLSLQASDFDGASSSGNPEAVALAPDAYSTGSSSASSTLKRTKKPRPPSLKKKQTTKKPTETPPVKETQQEPDEESLVPSGENLASETKTESAKTEGPSPALLEETPLEPAVGPKAACPLDSESAEGVVPPASGGGRVQNSPPVGRKTLPLTTAPEAGEVTPSDSGGQEDSPAKGLSVRLEFDYSEDKSSWDNQQENPPPTKKIGKKPVAKMPLRRPKMKKTPEKLDNTPASPPRSPAEPNDIPIAKGTYTFDIDKWDDPNFNPFSSTSKMQESPKLPQQSYNFDPDTCDESVDPFKTSSKTPSSPSKSPASFEIPASAMEANGVDGDGLNKPAKKKKTPLKTDTFRVKKSPKRSPLSDPPSQDPTPAATPETPPVISAVVHATDEEKLAVTNQKWTCMTVDLEADKQDYPQPSDLSTFVNETKFSSPTEELDYRNSYEIEYMEKIGSSLPQDDDAPKKQALYLMFDTSQESPVKSSPVRMSESPTPCSGSSFEETEALVNTAAKNQHPVPRGLAPNQESHLQVPEKSSQKELEAMGLGTPSEAIEIREAAHPTDVSISKTALYSRIGTAEVEKPAGLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIEDEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKRCAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAHQASLRKEQLRVDALERTLEQKNKEIEELTKICDELIAKMGKS"
misc_feature 372..1283
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 960..962
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648,
ECO:0007744|PubMed:20068231; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 972..974
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648,
ECO:0007744|PubMed:20068231; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 1176..1178
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:20068231; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 1311..1370
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1344..1346
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphothreonine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 1545..1730
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1764..2726
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1848..1850
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:20068231; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 2052..2054
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:20068231; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 2082..2084
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 2094..2096
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 2643..2645
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 2844..3263
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 3255..3257
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 3324..3521
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 3444..3446
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 3555..3833
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 4098..4193
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 4170..4172
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 4257..4571
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 4308..4310
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 4650..4760
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 4848..5354
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 5055..5057
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648; propagated from
UniProtKB/Swiss-Prot (O95359.3); phosphorylation site"
misc_feature 5394..5486
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="propagated from UniProtKB/Swiss-Prot (O95359.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
exon 405..517
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 518..5830
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 5831..5944
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 5945..6081
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 6082..7393
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 7394..7454
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 7455..7656
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 7657..7718
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 7719..7834
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 7835..8006
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 8007..8150
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 8151..8227
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 8228..8271
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 8272..8432
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 8433..8539
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 8540..8660
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
exon 8661..9212
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/inference="alignment:Splign:2.1.0"
regulatory 8854..8859
/regulatory_class="polyA_signal_sequence"
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="hexamer: AATAAA"
polyA_site 8881
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
regulatory 9184..9189
/regulatory_class="polyA_signal_sequence"
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="hexamer: AATAAA"
polyA_site 9212
/gene="TACC2"
/gene_synonym="AZU-1; ECTACC"
/note="major polyA site"
ORIGIN
ataagtggacagcctgctccaagggaaggatcaggagagaagaaacgcaaatcccagaaccgtgccaacatataaaaccccacattaagggttgtacagtgcactgggatttctcaagtcacccgcttggtcctcttccaagtatactttacttcctttcattcctctctaaaacttttttaaaaactttcactcctgctctaaaagttatcttggtttcttactctaccttatgccccttgggcgaattttttcctctgaggagggaagaatagagttgctgctgcagacacatcagattccctactggtaacagctggagtgcgtcacctctgacaaaattctggggacgctgggaacactgaatcaacatgggcaatgagaacagcacctcggacaaccagaggactttatcagctcagactccaaggtccgcgcagccacccgggaacagtcagaatataaaaaggaagcagcaggacacgcccggaagccctgaccacagagacgcgtccagcattggcagcgttgggcttggaggcttctgcaccgcttctgagagttctgccagcctggatccatgccttgtgtccccagaggtgactgagccaaggaaggacccacagggagccagggggccagaaggttctttgctgcccagcccaccaccgtcccaggagcgagagcacccctcgtcctccatgccctttgccgagtgtcccccggaaggttgcttggcaagtccagcagcggcacctgaagatggtcctcagactcagtctcccaggagggaacctgccccaaatgccccaggagacatcgcggcggcatttcccgctgagagggacagctctactccataccaagagattgctgccgtccccagtgctggaagagagagacagccgaaggaagaaggacagaagtcctccttctccttctccagtggcatcgaccagtcacctggaatgtcgccagtacccctcagagagccaatgaaggcaccgctgtgtggagagggggaccagcctggtggttttgagtcccaagagaaagaggctgcaggtggctttccccctgcagagtccaggcagggggtggcttctgtgcaagtgacccctgaggcccctgctgcagcccagcagggcacagaaagctcagcggtcttggagaagtcccccctaaaacccatggccccgatcccacaagatccagccccaagagcctcagacagagaaagaggccaaggggaggcgccgcctcagtatttaacagatgacttggaattcctcagggcctgccatctccctaggagcaattcaggggctgccccagaagcagaagtgaatgccgcttcccaggagagctgccagcagccagtgggagcatatctgccgcacgcagagctgccctggggcttgccaagtcctgccctggtgccagaggctgggggctctgggaaggaggctctggacaccattgatgttcagggtcacccacagacagggatgcgaggaaccaagcccaatcaagttgtctgtgtggcagcaggcggccagcccgaagggggtttgcctgtgagccctgaaccttccctgctcactccgactgaggaagcacatccagcttcaagcctcgcttcattcccagctgctcagattcctattgctgtagaagaacctggatcatcatccagggaatcagtttccaaggctgggatgccagtttctgcagatgcagccaaagaggtggtggatgcagggttggtgggactggagaggcaggtgtcagatcttggaagcaagggagagcatccagaaggggaccctggagaggttcctgccccatcaccccaggagaggggagagcacttgaacacggagcaaagccatgaggtccaaccaggagtaccaccccctcctcttcccaaggagcaaagccatgaggtccaaccaggagcaccaccccctcctcttcccaaggcaccaagtgaaagtgccagagggccaccggggccaacggatggagccaaggtccatgaagattccacaagcccagccgtggctaaagaaggaagcagatcacctggtgacagccctggaggaaaggaggaagccccagagccacctgatggtggagacccagggaacctgcaaggagaggactctcaggctttcagcagcaagcgtgatccagaagtaggcaaagatgagctttcaaagccaagcagtgatgcagagagcagagaccatcccagctcacactcagcacagccacccagaaaggggggtgctgggcacacggacgggccccactctcagacagcagaggctgatgcatctggcctaccacacaagctgggtgaggaggaccccgtcctgccccctgtgccagatggagctggtgagcccactgttcccgaaggagccatctgggaggggtcaggattgcagcccaaatgtcctgacacccttcagagcagggaaggattgggaagaatggagtctttcctgactttagaatcagagaaatcagattttccaccaactcctgttgcagaggttgcacccaaagcccaggaaggtgagagcacattggaaataaggaagatgggcagctgtgatggggagggcttgctgacgtccccagatcaaccccgcgggccggcgtgtgatgcgtcgagacaggaatttcatgctggggtgccacatcccccccagggggagaacttggcagcagacctggggctcacggcactcatcctggaccaagatcagcagggaatcccatcctgcccaggggaaggctggataagaggagctgcatccgagtggcccctactatcttctgagaagcatctccagccatcccaggcacaaccagagacatccatctttgacgtgctcaaggagcaggcccagccacctgaaaatgggaaagagacttctccaagccatccaggttttaaggaccagggagcagattcttcccaaatccatgtacctgtggaacctcaggaagataacaacttgcccactcatggaggacaggagcaggctttgggatcagaacttcaaagtcagctccccaaaggcaccctgtctgatactccaacttcatctcccactgacatggtttgggagagttctctgacagaagagtcagaattgtcagcaccaacgagacagaagttgcctgcactaggggagaagcggccagagggagcatgcggtgatggtcagtcctcgagggtctcgcctccagcagcagatgtcttaaaagacttttctcttgcagggaacttcagcagaaaggaaacttgctgcactgggcaggggccaaacaagtctcaacaggcattggctgatgccttggaagaaggcagccagcatgaagaagcatgtcaaaggcatccaggagcttctgaagcagctgatggttgttccccactctggggcttgagtaagagggagatggcaagtggaaacacaggggaggccccaccttgtcagcctgactcagtagctctcctggatgcagttccctgcctgccagccctggcgcccgccagccccggagtcacacccacccaggatgccccagagacagaggcatgtgatgaaacccaggaaggcaggcagcaaccagtgccggccccgcagcagaaaatggagtgctgggccacttcggatgcagagtccccaaagcttcttgcaagtttcccatcagctggggagcaaggtggtgaagccggggctgctgagactggtggcagcgctggtgcaggagacccaggaaagcagcaggctccggagaaacctggagaagctactttgagttgtggcctccttcagactgagcactgccttacctccggggaggaagcttctacctctgccctacgtgagtcctgccaagctgagcaccccatggccagctgccaggatgccttgctgccagccagagagctgggtgggattcccaggagcaccatggatttttctacacaccaggctgtcccagacccaaaggagctcctgctgtctgggccaccagaagtggctgctcctgacaccccttacctgcatgtcgacagtgctgcccagagaggagcagaagacagtggagtgaaagctgtttcctctgcagaccccagagctcctggcgaaagcccctgtcctgtaggggagcccccacttgccttggaaaatgctgcctccttgaagctgtttgctggctccctcgcccccctgttgcaaccaggagctgcaggtggggaaatccctgcagtgcaagccagcagtggtagtcccaaagccagaaccactgagggaccagtggactccatgccatgcctggaccggatgccacttctggccaagggcaagcaggcaacaggggaagagaaagcagcaacagctccaggtgcaggtgccaaggccagtggggagggcatggcaggtgatgcagcaggagagacagagggcagcatggagaggatgggagagccttcccaggacccaaagcagggcacatcaggtggtgtggacacaagctctgagcaaatcgccaccctcactggcttcccagacttcagggagcacatcgccaagatcttcgagaagcctgtgctcggagccctggccacacctggagaaaaggcaggagctgggaggagtgcagtgggtaaagacctcaccaggccattgggcccagagaagcttctagatgggcctccaggagtggatgtcacccttctccctgcacctcctgctcgactccaggtggagaagaagcaacagttggctggagaggctgagatttcccatctggctctgcaagatccagcttcagacaagcttctgggtccagcagggctgacctgggagcggaacttgccaggtgccggtgtggggaaggagatggcaggtgtcccacccacactgagggaagacgagaggccagaggggcctggggcagcctggccaggcctggaaggccaggcttactcacagctggagaggagcaggcaggaattagcttcaggtcttccttcaccagcagctactcaggagctccctgtggagagagctgctgccttccaggtggctccccatagccatggagaagaggccgtggcccaagacagaattccttctggaaagcagcaccaggaaacatctgcctgcgacagtccacatggagaagatggtcccggggactttgctcacacaggggttccaggacatgtgccaaggtccacgtgtgccccttctcctcagagggaggttttgactgtgcctgaggccaacagtgagccctggacccttgacacgcttgggggtgaaaggagacccggagtcactgctggcatcttggaaatgcgaaatgccctgggcaaccagagcacccctgcaccaccaactggagaagtggcagacactcccctggagcctggcaaggtggcaggcgctgctggggaagcagagggtgacatcaccctgagcacagctgagacacaggcatgtgcgtccggtgatctgcctgaagcaggtactacgaggacattctccgttgtggcaggtgacttggtgctgccaggaagctgtcaggacccagcctgctctgacaaggctccggggatggagggtacagctgcccttcatggggacagcccagccaggccccagcaggctaaggagcagccagggcctgagcgccccattccagctggggatgggaaggtgtgcgtctcctcacctccagagcctgacgaaactcacgacccgaagctgcaacatttggctccagaagagctccacactgacagagagagccccaggcctggcccatccatgttaccttcggttcctaagaaggatgctccaagagtcatggataaagtcacttcagatgagaccagaggtgcggaaggaacagaaaggagttccgattctgaagaggcatttgagaccccggagtcaacgacccctgtcaaagctccgccagctccacccccaccaccccccgaagtcatcccagaacccgaggtcagcacacagccacccccggaagaaccaggatgtggttctgagacagtccctgtccctgatggcccacggagcgactcggtggaaggaagtcccttccgtcccccgtcacactccttctctgccgtcttcgatgaagacaagccgatagccagcagtgggacttacaacttggactttgacaacattgagcttgtggatacctttcagaccttggagcctcgtgcctcagacgctaagaatcaggagggcaaagtgaacacacggaggaagtccacggattccgtccccatctctaagtctacactgtcccggtcgctcagcctgcaagccagtgactttgatggtgcttcttcctcaggcaatcccgaggccgtggcccttgccccagatgcatatagcacgggttccagcagtgcttctagtacccttaagcgaactaaaaaaccgaggccgccttccttaaaaaagaaacagaccaccaagaaacccacagagacccccccagtgaaggagacgcaacaggagccagatgaagagagccttgtccccagtggggagaatctagcatctgagacgaaaacggaatctgccaagacggaaggtcctagcccagccttattggaggagacgccccttgagcccgctgtggggcccaaagctgcctgccctctggactcagagagtgcagaaggggttgtccccccggcttctggaggtggcagagtgcagaactcaccccctgtcgggaggaaaacgctgcctcttaccacggccccggaggcaggggaggtaaccccatcggatagcggggggcaagaggactctccagccaaagggctctccgtaaggctggagtttgactattctgaggacaagagtagttgggacaaccagcaggaaaacccccctcctaccaaaaagataggcaaaaagccagttgccaaaatgcccctgaggaggccaaagatgaaaaagacacccgagaaacttgacaacactcctgcctcacctcccagatcccctgctgaacccaatgacatccccattgctaaaggtacttacacctttgatattgacaagtgggatgaccccaattttaaccctttttcttccacctcaaaaatgcaggagtctcccaaactgccccaacaatcatacaactttgacccagacacctgtgatgagtccgttgacccctttaagacatcctctaagacccccagctcaccttctaaatccccagcctcctttgagatcccagccagtgctatggaagccaatggagtggacggggatgggctaaacaagcccgccaagaagaagaagacgcccctaaagactgacacatttagggtgaaaaagtcgccaaaacggtctcctctctctgatccaccttcccaggaccccaccccagctgctacaccagaaacaccaccagtgatctctgcggtggtccacgccacagatgaggaaaagctggcggtcaccaaccagaagtggacgtgcatgacagtggacctagaggctgacaaacaggactacccgcagccctcggacctgtccacctttgtaaacgagaccaaattcagttcacccactgaggagttggattacagaaactcctatgaaattgaatatatggagaaaattggctcctccttacctcaggacgacgatgccccgaagaagcaggccttgtaccttatgtttgacacttctcaggagagccctgtcaagtcatctcccgtccgcatgtcagagtccccgacgccgtgttcagggtcaagttttgaagagactgaagcccttgtgaacactgctgcgaaaaaccagcatcctgtcccacgaggactggcccctaaccaagagtcacacttgcaggtgccagagaaatcctcccagaaggagctggaggccatgggcttgggcaccccttcagaagcgattgaaattagagaggctgctcacccaacagacgtctccatctccaaaacagccttgtactcccgcatcgggaccgctgaggtggagaaacctgcaggccttctgttccagcagcccgacctggactctgccctccagatcgccagagcagagatcataaccaaggagagagaggtctcagaatggaaagataaatatgaagaaagcaggcgggaagtgatggaaatgaggaaaatagtggccgagtatgagaagaccatcgctcagatgatagaggacgaacagagagagaagtcagtctcccaccagacggtgcagcagctggttctggagaaggagcaagccctggccgacctgaactccgtggagaagtctctggccgacctcttcagaagatatgagaagatgaaggaggtcctagaaggcttccgcaagaatgaagaggtgttgaagagatgtgcgcaggagtacctgtcccgggtgaagaaggaggagcagaggtaccaggccctgaaggtgcacgcggaggagaaactggacagggccaatgctgagattgctcaggttcgaggcaaggcccagcaggagcaagccgcccaccaggccagcctgcggaaggagcagctgcgagtggacgccctggaaaggacgctggagcagaagaataaagaaatagaagaactcaccaagatttgtgacgaactgattgccaaaatggggaaaagctaactctgaaccgaatgttttggacttaactgttgcgtgcaatatgaccgtcggcacactgctgttcctccagttccatggacaggttctgttttcactttttcgtatgcactactgtatttcctttctaaataaaattgatttgattgtatgcagtactaaggagactatcagaatttcttgctattggtttgcattttcctagtataattcatagcaagttgacctcagagttcctgtatcagggagattgtctgattctctaataaaagacacattgctgaccttggccttgccctttgtacacaagttcccagggtgagcagcttttggatttaatatgaacatgtacagcgtgcatagggactcttgccttaaggagtgtaaacttgatctgcatttgctgatttgtttttaaaaaaacaagaaatgcatgtttcaaataaaattctctattgtaaataaaattttttctttggatcttggcaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]