2024-07-06 08:04:29, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS XR_005841611 11374 bp RNA linear VRT 01-MAR-2022 DEFINITION PREDICTED: Gallus gallus argonaute 3, RISC catalytic component (AGO3), transcript variant X1, misc_RNA. ACCESSION XR_005841611 VERSION XR_005841611.2 DBLINK BioProject: PRJNA698609 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052554.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 1, 2022 this sequence version replaced XR_005841611.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..11374 /organism="Gallus gallus" /mol_type="transcribed RNA" /isolate="bGalGal1" /db_xref="taxon:9031" /chromosome="23" /sex="female" /tissue_type="blood" /country="USA: Fayetteville" /lat_lon="36.0822 N 94.1719 W" /collection_date="20-May-2019" /collected_by="Nick Anthony" gene 1..11374 /gene="AGO3" /gene_synonym="EIF2C3" /note="argonaute 3, RISC catalytic component; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 mRNAs, 32 ESTs, 313 long SRA reads, 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 65 samples with support for all annotated introns" /db_xref="CGNC:14656" /db_xref="GeneID:419628" misc_RNA 1..11374 /gene="AGO3" /gene_synonym="EIF2C3" /product="argonaute 3, RISC catalytic component, transcript variant X1" /experiment="COORDINATES: cap analysis [ECO:0007248] and polyA evidence [ECO:0006239]" /db_xref="GeneID:419628" /db_xref="CGNC:14656" ORIGIN
acttccggcggcctgtggttcggcgggcgggcggcagcgtgagtcggggctgcggggcggccacgcaacttccgcccgggggggcgccgccgccgctgccgccgcctgaggggacgggagcggccgagaagaggcgccgggctgcggcctaaagggagcgggaagccgccgccgcctctcagcgcagcccgaccggggcccgggcctggcccagctcagctcagcggcggagcccgcagccccgagcggctgcacccagctccatgaatggaaatcagcagcgcaggacccgtcggggcacagcccctgctcatggtgcccagacggcctggctatggcaccatgggcaagcccattaaactgctggccaactgcttccaagttgaaatcccaaagattgatgtctacctctatgaggtggatatcaaaccagataagtgtcctcggagggtgaacagggaggtggtggactcaatggtgcagcattttaaagtgacgatatttggggaccgtcgaccagtttatgatgggaaaagaagcctttatacagccaacccgcttcctgtggccactactggggtggatttggatgtgacattgccaggagaaggtggaaaagatcgtcccttcaaagtgtcaataaagtttgtttctcgggtgagctggcacttgctgcatgaagttttgacaggaagaaccttgcctgagcctctggaactagacaaacctatcagcactaaccctgttcatgctgtcgatgtggtgctacgacacctgccctccatgaagtatacccctgtgggccgctccttcttctcagctccagaaggctatgatcaccccttgggggggggcagggaggtctggtttgggttccatcagtctgtccggcctgccatgtggaagatgatgctcaacattgatgtttctgccactgccttctacaaagcacaacctgtgattcagttcatgtgtgaagttcttgacattcataatattgatgaacaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaagggtctgaaggtagaagtgactcattgtggaacgatgaggcggaaataccgtgtttgtaacgtaaccaggaggcctgcaagtcatcaaacctttcctttacagttagaaaatggccagactgtggagagaacagtagcacagtacttcagagagaaatacaacctccagctgaagtatcctcatctgccttgcctgcaagtgggacaggaacagaaacacacctacctgcctttagaagtttgtaacattgtggctggccaacggtgtatcaagaagctaacagacaatcagacatcaactatgataaaggccacagcaaggtctgctccagataggcaagaggaaataagcagattggtgagaagtgcaaattacgatgcggatccatttgttcaagagttccaattcaaggtccgggatgagatggcccacgtgacggggcgcgtgctccctgcacccatgctgcagtatggaggacggaaccgaacggtggcaacccccagccatggagtttgggacatgcgagggaagcaattccacactggtgttgagatcaaaatgtgggctatagcttgttttgcaacgcagaggcaatgcagagaagaaatactgaagggttttacagaccagctgcgcaagatctccaaggacgcagggatgccgatccaaggccagccctgtttctgtaaatacgcccagggtgcagacagtgtggagcccatgtttcggcacctcaagaacacctattcagggcttcagctcatcattgtcatcctgccaggaaaaacaccggtgtacgcggaggtgaagcgtgtgggagatacgctattgggaatggccacgcagtgtgttcaagtcaaaaatgtcattaaaacatctccacagaccctttcaaacctgtgcctgaagattaacgttaaattaggaggaatcaataacatccttgtacctcatcaacgcccttctgtgttccagcagccagtgatctttctgggagctgatgtcactcaccctcctgctggagatggaaagaaaccttccatagctgctgttgtaggtagtatggatgctcatccaagccgatactgtgccacggtgagagttcagcggccccggcaggagattatccaagacctggcctccatggtgagggagcttctcatccagttctacaagtcaacgcgcttcaagcccacacgtatcatcttctacagggacggggtctctgaaggacagttccgacaggttttgtactacgaactgctagccattagagaagcctgcatcagtttggagaaggattaccagcctggaataacctatattgtggtgcagaaacgacatcatacacggttgttctgtgctgacagaacagagagggttggacgaagtggcaatatcccagctggaacaactgtagatacagacattacacatccatatgagttcgatttttacctctgcagtcatgctggaatacagggtaccagccgtccctcacactatcatgttttgtgggatgataactgttttactgcagatgaacttcagctgctgacttaccagctctgccacacatacgtgcgctgcacacgatcagtttctatacctgcaccagcgtattatgctcacctggtagcattcagagcacgataccatcttgtggacaaagaacacgacagtgctgaaggaagccacgtttcaggacagagcaatggcagagatccacaggccctggcgaaggctgtacagattcaccaagacaccttacgcacgatgtacttcgcttaagtcaataaaaggggagcgtactcgctgacaggaagaactgacaaattaagccacatacaattgcaataagcgttcgaaaagaaaacggtgtccattgagctgtaccagagcagtgtttgtaccactggctgtgggaggacggacacctccggttttaaaaggacaaagtaaaagccttaattttgaaaggaaagttttatagtcagaaggaatctcgggttttccttttttaaatcaaaaagtagcaaaagtgcttctggaactctgcaggcttcaccgctcgctgccgtggtttggtttaacaaaggaaccggccgtctttttggctttgagacgtggaagatatttgaattaaacaaaaagctttttttattgagatctaagtttttacatgcttaattaaatctgacatcaataaaatgtctggagttatgaaaagtttttaggcttttttcctctttgataacgactttccttttaaaattaagttattggtgacttcatttcactttgcaaataaagtaagagggctgggatagttctacctttaaatcactgaaatgtgaaacagacgaacgggactctttcattccactttaaaggtaaaccaatcgtaagatgtcagagatgagcatttattccgcgaggggactgggaagttttgcactttgtaaactcgtgaactgcatttttgactgtttttttttttttatttgcactggttcatagtatatatactgcagatcgtttctatgggcattgctgttatcccagcccttctgaaccccacctgctctccacatgaaaaccagagggtcggtaaagcagcttttatctcctggcgttctcacagaatgcgctctttgccaatatataccgtgttttgagcctaaaatctgagcccgttttgcttcagcaggcatgactctccccatcttttctgccagaagacaaagtactgtattttgtgcatttgtatattgtactgaaatgtatgtagtgctgttcacaacgctgtctcaaagagctctgctcggcagttggcgtgtaggcgtgctttatctcccagtaccaaggaaggtaatgtaacgactgaccttgcaccgttaccattgcactgcaaatagtcctgagggcgggcagctcctgtggctggggggggagggggctgttggggagcactggagggcagtggggttagggtgagccctgagccccccatcgggctgcagctccgggatggcccagccctgctccagcctgcaggtgcccgcagtgcctcgaggcagagctgcagggaggtgctgctgcagctgttggagcggggagggctctgatcaacctctgaagcgttccccttggtcggtggcctggcagctctctagctagcagtcctgttaatgaaaggttggggttaggctttttacagaaagctaatgctcggagagaagcagggatttcttgtaaagagcctattttacaaagccttcttgtgcatttctggcatgaagatgaaaattcctcttttaaaaagtcttttaatgctccttgcagagacgctgtgcccttctcatcctgcccacgctcactgactatgacctgagaggcttttcgcttccaaccctcaccaaaaaacaaaggaactgcattgggaaggtgacttagatgctagctcgacagctggtttacctggttttcatgtgaagagtacgtggaagtttgaatctctcttcttggttttgcaaatatctacgtaaagtgccgatacttctttgtattacaatatcaacttactggcgttgtgagggccacacatttatgatgctgtagctgctatatttatttaaatggagatggacaattactgcactaaggaatgaggagataagcaaggaatcaaggttagttagatatcttgtttgtttgtttattttttttttcaaaagagaattaatggtgtgaaatatcaaagtgtaacaaagggtgctgtcattttaactgagattaaatagccagatattcttcctttgtttaaaaacatatatattttgatgtttgcagtttgggggtggggggtcgggataaatggtacctcatctgtggtggcagtttccggtatattttcagagtatatggatttcttttatttt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taccttcacttaacacagcgctctttgcagtctgtccatccagcagagcctgtgccctttgctttgtctcagcacagccgtcccaaggagctccttggggtcagtcagtgtgcactgctgctttctgtcatcttttgttgcaaaatagaggatgagttgattcaaataaaaggttttctttacgttgctgaggatctcagaggtctttcaaacacatttagcagttgaaaaacgaatacctaccgcgatgctctccaacaacacagagaaatggggttatcttgagattatcttacctgaatcgtgggtccacaaccagccttgatacagctgtgcaacagttagacattaaaatagttactaatcatctttcatagtgctaatgcttgcaaatctcttcagtgcattcaagaacagtttatttggacatctcacaggtcagtgcttgctccgctcagttggccaagcaatacccactggagcagtgctacagctaaggagcctttggtgtttggagcgtgccagcaaagcagtgtttgtgcagtgcagaggagaacggagtgctgagcagagctgctgtgtgaggctgaggtgaggtttggctgctggcagtttgcacacagctgccttcctcggggctttggttgtgttcattgcagcctcctggggctgtagctttcaggttcctttggatttgctttctgctcctcagcagagcgctgccttttctgcacttgtcagtgttcgatccgttgaatctcacctcgaggaaactccacgttgttttcctgtaggtaaacctgcttttagacgctgcattttcttgtctgttccacgggcaatcctgcaaagcctcagcacagcaatagcattgacagaatgggtgctcagtgatctcacagctgtgagcagaggcacagtggggcctcaccatgcagctctcctgtccgtgctggttggtttcctcccttgctgtgagcagtttggcttccccgggtgtgtgaaatgggtggagaaatggccctgtaatttgttttgtgggggagaactcatctgttagaatgcaccgaggcatctgatcatagataagagtgttgtcatggagaggtgtcacttaaagctttcattgtaattggtggcaattggtgatgaggcagtttgggtattggaacatctctgggaggcggtggctcaggtggcagtgtgtgccataagcattgctgtgtcggtgtaggagactgctgggagcagcgttgtgcaaatacaccctttgcatattgaataccacctgttcaaatgaaaaacaaaactattgtgctgtttgggattccttctcaaaataaagttctaataaacgaatccagtgcattgaga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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