2024-07-06 08:31:05, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS XM_046932028 6715 bp mRNA linear VRT 01-MAR-2022 DEFINITION PREDICTED: Gallus gallus argonaute 1, RISC catalytic component (AGO1), transcript variant X1, mRNA. ACCESSION XM_046932028 VERSION XM_046932028.1 DBLINK BioProject: PRJNA698614 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052595.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6715 /organism="Gallus gallus" /mol_type="mRNA" /isolate="bGalGal1" /db_xref="taxon:9031" /chromosome="23" /sex="female" /tissue_type="blood" /country="USA: Fayetteville" /lat_lon="36.0822 N 94.1719 W" /collection_date="20-May-2019" /collected_by="Nick Anthony" gene 1..6715 /gene="AGO1" /gene_synonym="EIF2C1" /note="argonaute 1, RISC catalytic component; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 mRNAs, 1 EST, 343 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 63 samples with support for all annotated introns" /db_xref="CGNC:1607" /db_xref="GeneID:428222" misc_feature 1 /gene="AGO1" /gene_synonym="EIF2C1" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 309..2699 /gene="AGO1" /gene_synonym="EIF2C1" /codon_start=1 /product="protein argonaute-1 isoform X1" /protein_id="XP_046787984.1" /db_xref="GeneID:428222" /db_xref="CGNC:1607" /translation="
MPTQSQQVREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWMAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 393..617 /gene="AGO1" /gene_synonym="EIF2C1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 645..797 /gene="AGO1" /gene_synonym="EIF2C1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 798..1160 /gene="AGO1" /gene_synonym="EIF2C1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(954..956,999..1001,1041..1043,1053..1055,1107..1109, 1128..1130,1134..1136) /gene="AGO1" /gene_synonym="EIF2C1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1293..2570 /gene="AGO1" /gene_synonym="EIF2C1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1704..1706,1716..1718,1752..1763,1770..1772, 1794..1796,1803..1805,1815..1817,1827..1829) /gene="AGO1" /gene_synonym="EIF2C1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1908..1910,1914..1916,2124..2126,2538..2540) /gene="AGO1" /gene_synonym="EIF2C1" /note="active site" /db_xref="CDD:240015" polyA_site 6715 /gene="AGO1" /gene_synonym="EIF2C1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ggcgcgtgcgcgctggggcgcagcgtgaggcggctgcggcggtgcggcaccggccccggccccgcgccccggccctgccctgcccgcggcccggcgaggagcggcgcccgcgtggatgggatggaagcgggaccttcgggagcagctgcaggcgcatacctgccacccttgcagcaggtatttcaagcgccgcgtcggcccgggataggaactgttgggaagcccatcaagctcttagccaactactttgaagtggacattcccaagatcgatgtatatcattatgaagtggatatcaagcccgacaaatgcccacgcagagtcaacaggtaagggaagtcgtggagtacatggtacagcacttcaaacctcagatctttggcgaccggaagccagtctacgatgggaagaaaaacatttacactgttacagccttacccattggaaatgagagggttgactttgaggtgacaatcccaggagaaggcaaggacaggatatttaaggtctctatcaagtggatggccattgtgagctggcgcatgctccacgaagccctggtgagcgggcagatccctgtccctttggagtctgtccaggcactggatgtggccatgaggcacctggcttccatgaggtacacccctgttggccgctccttcttctccccaccagaaggctattaccaccccctgggaggtggcagggaggtctggttcggtttccaccagtctgtcaggcctgccatgtggaagatgatgctcaacattgatgtttctgcaacggccttctacaaagcccagcctgtaattgagttcatgtgtgaggtgctggatatccggaacatcgatgaacaaccgaagccactgacggactcacagagagtgcgtttcaccaaggagatcaaaggtttgaaagtagaggttacccactgtgggcagatgaagaggaaataccgtgtgtgtaacgttacccggcggccggccagccaccagacgtttcccctgcagctggagagcggtcagacagtggagtgcacagtggctcagtacttcaagcagaaatacaacctgcagctgaaataccctcacctcccgtgtctccaggttggccaagagcagaagcacacatacctgcccttggaggtgtgtaacatcgtggcaggccagcggtgcatcaagaagctcacagacaatcaaacatcaaccatgataaaagcaacggccaggtctgccccagacaggcaggaggagatcagccgcctgatgaagaatgccagctacaacctggatccgtacattcaggagtttgggatcaaggtgaaggatgacatgacggaggtgacggggagggtcctgccagcacctattctgcagtacggaggcaggaaccgagccattgcaactcccaaccagggcgtgtgggacatgcgagggaagcagttctacaacggcattgagatcaaagtctgggcgattgcttgctttgccccgcagaagcagtgtcgagaagaggtgctgaagaactttacagaccagctgcgcaagatctccaaggacgcagggatgccgatccaaggccagccctgtttctgtaaatacgcccagggtgcagacagtgtggagcccatgtttcggcacctcaagaacacctattcagggcttcagctcatcattgtcatcctgccaggaaaaacaccggtgtacgccgaggtgaagcgtgttggggacactctcctgggaatggccacgcagtgcgtccaggtcaagaatgtggtgaaaacctccccgcagaccctttccaacctctgcctcaagatcaacgtcaagcttggcgggatcaacaacatcctagtgcctcaccagcgctctgctgtctttcagcagccagtgatattcctcggggctgatgtcactcacccacctgctggagatgggaagaaaccctctataacagctgttgtgggcagcatggacgcccaccccagccggtactgtgccacggtgcgtgtgcagcgtcctcgccaggagatcattgaggatttgtcctacatggtaagggagctcctcatccagttctacaaatccacgcgcttcaaacccaccaggatcatattctaccgtgacggtgttcccgaggggcagctcccacagatccttcactacgagctcctagcaatccgagatgcctgcatcaaactggaaaaggattaccagcctggcatcacttatatcgttgtccagaaaaggcatcacacccgtctcttctgcgcagacaagaatgagaggattgggaagagcgggaacatcccagcaggaacaacagtggatacaaacatcactcaccctttcgagtttgacttctacttgtgcagtcatgcaggcattcagggtacgagccggccctcccattactacgtgctctgggatgacaaccggttcaccgcagatgagctgcagatcctcacgtaccagctgtgccatacctacgtgcgctgcacccgctcggtctccatcccagccccggcttactacgcccggctggtggcattcagagcgcggtaccacctcgtggacaaggagcatgacagtggcgagggcagccatatatctggacagagcaacggcagagacccccaggccttggcaaaggctgtgcaggttcatcaggacactttacgtaccatgtactttgcttgaaagcctaacttttgttacctcactcaagaaagctttcagatttgtaggagccatacaaaaaaggaagcattgggacaccttgtttttttttttccaatgagaaatcactgcagggcaggcagcgtcggttcgaggcaggagaccagcaccaccggacaggaagatccaacaccttcgtaggattggaagagactgattatttttttagttttttctggctttgcaaaattttgacctgaccaaacacatgaaggcattcaaggaagggataaaagtcccaggaggcggaagcaggttgtcatgtttaagatgcaatactatagactcctgactgtgaaaggcggatttggtcctccgttgcccaccaggcgctggtaggtattttttgtgggggttggggggaggggatttttagagccttaaaacagaagactagatttataaaactaatattttagaatatgagatgctttaatgggttaaggggaaaaaacaactagtttatagataactctaacactaacagttccccgcccccgagcgattccccccatataacgtaaggcaccctagcacttagctcagaactgaaaactgtcttccttgtgttaaaagctagttagctgctgccatttgaagcaacagtcacagacttttccatgggtgagtgccttactacgatgctgcaaaatttcaatgtttttaatcttgtaaggaaaatagtaatcttgtcttgatggtggtccatatttccatcggaaggagttaatttctatggtcctgagttgcagtttgtgttagatcacaacctcgtggtggttaaactccgttgaaagatgtgcactttcatataggacacgtttaatggctgctgacccatttttgtttccaatgtactacttgttatttaaaactgtttctgacaaatgggggcactgccatcccatgaggacagaaatcgctatcaatttcttttttttcttttttctttttttttttttcctgaatttctatgatggacaccgggatttttttactgagcattatttttatacgatactgagtctgttgccaaaacacacgagtcattcacatcctcagagtttacatcgccgcgctcgcaccagaggttcccaacgtttcctgtgtgtgttacacagtgtggccgtgcagctcggggcctctccactgttgtgctgctaccttgtgctgctctttgtgtcaccctattgctgatttcgtgcacggggtttttattctgaaagcacaccagagacgttccttagtcagaatgatcaaatccttgttaccgtcgtggggaagctcctcctgatctgtttttaacaggggaaaaaaaaaaaaagccttttttgtttgtttgtttccaacagtaacatggtggctgcttttcagactcattttgctgcacagaatgaccattatgcacagcagggcagtagtaacaactcattaccaatatcacgtgggcagattgggtttttttctatatgaaaggtgtgcacaacgcttccttgaagagagaaactgtgtgcactcctgctgagctctcaggagaagagctctgttatcattttactgccaaaagtgaacgtgttttcagagcagatctgtcaccagcactgccccttgtcagtgcgcggatagaagcacacctttttgttttgtactttctgatgtttaaactcgccttgccttcatgaaatccatactagtcatgctggcccattgatctgtcctaatactgggaattcactctgcctgttttctttttgggcaacgtgtttgtgaacaatgaagacatcaatatgctatgcaaactaagtgctgagcccgctgatgtcacctttggtgaagatcctacatttagcacagttgtctttttcctcgagactgcagtatttggttcacattctcctttgcaccttgtgtcaaacaccactgctgtctgtctgcagggtggtggggaggagaccaggagctcttcgtggtcagtagggtaggaagtcttaggaaagcttttagagagcagggaatgcatcaacactaagcgtcaacgtgagaagcctacattcctatacacaagtgcctgcatagtgacacaaatccagcacctctccatttcatcctcagacctctggcttgtgttcattgaaagcaaaacgatctcagaggggctgtacctgctcacctcgtattagaaagcccctcgttaagaatcaaaccggggttaaggtcaaggttctctctgtaagtgggtttgttcaccagcattacaatggaaagcacctggctgctggcagcagcgaggggcaaaggtattttggttcctagtttttctttcttttagtgttttagttgggtctagaattctggaatgtcttttagtagccgtggcatagcacgtgccatttttaaccatttgaaaagagatagtgtgggcatttacagaaacagcttgttgctctgtaatgttttttttttttttaaccttgagacttgaaatgtaaaatggacctttaagatttgcactcatttgtaaggtggctgttcatagagaactatgaatgaagacttgctgatgtagcacctacttttaacagcaattttaactacacaaaagcttcacagcttctgaaacgctcagctggtgacttgcagatcgcgttctgcccttatttcaccctctgcattgggttttcatggttttgattcaataaaaaagccaaactcaatagctgctgtgccctttaagccgtatttccactttgaagatgttataaggggtttgagttacccgcatgttttctataacagactatgcactgtaccttctgcgcagctccagcattcaatatttctaccgttttcttgtccaagatgcaaacgaataagtgcatgtcgaggtgctgtgcattttgctacccgtagcagatagctgttaagccagagacatatcaggatctgtagttagccacaaaccccacgtggacatcccgaatggctcccgagtctctctgccttctcagtgcgcacgcgttccttctgcaactggaaacatcgccaagtgcatgcaagccttgtgggaagaggaataacttccatttgtctgtcggttgttggatgctgtgtgtttcccttgtctcatacctggacgtgacgggggcagtgggggtgtcccagtactcgcaagcctctgacctgatgcctcgtgtcacaaagcccgagcgttcagcgttgcctcgtggaaggttttcttcttggaaaatgagtgtgaaaataaagaaaagaatgtcattcttttaggaagggaagccagacagcaggacagcaataaacacatgaaattcatatcttgcctgagtgatttgcacttcgatagtcgtgaaagaaaattgatggggactccagtgcttttgtgttcagttctagcccctttcgtacctcctttatacagcaggtgttggactgtacatggggtgtttacaaacactctctttgggttgttatttttcttgcggttattttttttttgctttagcttgaactctctatggtccatttgttaaatagatgtgaacggttgatgtacagtacttactaaacaagcagcagcacaaaacttattttattaagaaaatatggcatatattttaaaggttgggtatcaacttttctttttttttctttttgtatgcgtggaattaagactggtgaagagtaacaaaacccttggattacatttggattaggccaaaagatgatactgtaagatcgtaaccacctctttattaaagaaagcggtatgattaaagagctccagaacattgtatttatatttgatttgattgctttggtggattttttttttttaatttcaattttttttttttttttgccttaatcctgatttttgcttgcaactttgacttcgcagtcccaagtgtctgttatcctgtaagtgttggcagaagacctaaataaaagcaatgtgaata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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