2024-09-29 09:31:33, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_040695996 1911 bp mRNA linear VRT 01-MAR-2022 DEFINITION PREDICTED: Gallus gallus uncharacterized LOC121113086 (LOC121113086), mRNA. ACCESSION XM_040695996 VERSION XM_040695996.1 DBLINK BioProject: PRJNA698609 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052533.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1911 /organism="Gallus gallus" /mol_type="mRNA" /isolate="bGalGal1" /db_xref="taxon:9031" /chromosome="2" /sex="female" /tissue_type="blood" /geo_loc_name="USA: Fayetteville" /lat_lon="36.0822 N 94.1719 W" /collection_date="20-May-2019" /collected_by="Nick Anthony" gene 1..1911 /gene="LOC121113086" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="CGNC:92940" /db_xref="GeneID:121113086" CDS 819..1766 /gene="LOC121113086" /codon_start=1 /product="uncharacterized protein LOC121113086" /protein_id="XP_040551930.1" /db_xref="GeneID:121113086" /db_xref="CGNC:92940" /translation="
MEVASDWTCPICGQSREDVAYVTPCSHQLCYGCAFWWAMKKPTCAVCGHKTKTIRYSVRSDDDYMECPVPQPAGHSGSGLQGEQGPAEPVLIAPEHSFPPEVWAAFFEQHPQDLEPLFQWLQEEIETTISGSEWWEVFARQCTVVGFLCTYGLNQVALLRVLQPLTKEHTAPFVRRLITTAAALYGPEIRRQRDHSAGGQEDRAAAARSTTTSHQGPPASRPGRCASPAGLSNAELPGALREGPGHPTTNAVSSEEPREEQEQMEAAGPSTRHKKPSARGRERLPGGPRRPLKRKARSSPRDSSPPRKRGPRRQH"
misc_feature 837..989 /gene="LOC121113086" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order(843..845,852..854,891..893,897..899,906..908, 915..917,948..950,957..959) /gene="LOC121113086" /note="cross-brace motif; other site" /db_xref="CDD:438111" misc_feature <1401..1745 /gene="LOC121113086" /note="Herpes virus major outer envelope glycoprotein (BLLF1); Region: Herpes_BLLF1; pfam05109" /db_xref="CDD:282904" ORIGIN
gagagattctaaagtagcttgtttgggatgaaatagtccttcaaggcaaaagcgaatgcctgaaatagaacaaaatctcggaatcacagaatggcatgggttggaagggacctctggagatcatctgctggagcagatcctgtggagtagattgcagaggaaagcgtgaacaaataccctcctgtggtatgcgcatatggtataaaaagcaagcccggcataaagatgaccgccgatttgtattgcgttcaaaacggaacaggcaacaagtgactctcaaaatttcaggaagtttaaacaggtcacaaaagtcggattagtgtggagataatgaacgcgcaacttttatttttccaaatttgtgacaaacacaaaggaaaatcacagaaggctggagggtgatgaaagcccaggctggtgcccaaatgcatgcagccattggctgtgaggtcaccgagcaagaaggggttgtgacatcagcgagagatgattgtggtctcacaggcccttgctgtataagctcaggtgctggcaaagcccagcgtgcactcgtgcctggactccagtcgagcacagctgcgagacttggacccgctgaacgaggccttggttaggttgtgctgttctcggggcggcagttcttggtgcccatcctacagcatcttcatttccccagccctgcctggctcaggtagctggggcctagcggggtgtgctgcagcagcagagtttgtcatacctcctgcccactgcagcaccggtgaggggagcagcttcccaggctcagctctccccagcccaccgcacagcccggggccatggaggtggcatctgactggacctgccccatctgtgggcaaagtcgcgaggatgtcgcctacgtgaccccctgttcccaccagctttgctatggctgcgcgttctggtgggcgatgaagaagccaacgtgtgccgtgtgcgggcacaaaacaaaaaccatccgatactcggtgaggtcggatgatgattacatggagtgtcctgtcccgcagcctgcaggacactcgggcagcggcctgcagggtgagcaggggcctgcagagccagtgctcatcgcaccggagcacagcttcccgcccgaggtctgggctgcctttttcgaacaacacccgcaagacctcgaacccctgttccagtggctgcaagaagagattgagacaacgatctctggcagcgagtggtgggaggtgtttgccagacagtgcaccgtggtgggcttcctttgcacatacgggctcaaccaggtggccttgctgagggtgctgcagccactgaccaaagagcacacagcgcccttcgtgaggcggctcatcaccaccgctgcagccctgtacggcccagagatccgccggcagcgggaccattctgcaggagggcaggaggacagagccgcagccgcccgtagcaccaccacctcccaccaagggcctcctgcctctcgcccaggccgctgtgccagccctgcaggcctcagcaatgcggagctcccaggcgcccttcgtgagggtccaggacaccccaccaccaacgctgtgtcctcagaggagccacgggaggagcaggagcagatggaggcagcaggtccctccactcggcacaagaagccctcggcccgtggcagggagcgcttgcccggggggccccggcgccccctgaagaggaaggcccgcagcagcccccgggattcatctccgccccgcaagagggggcctcggcggcagcactagaccagcagcccgccgccgggcgcagcgtgtctcaggcagagtgggaggccaacatctaactccctctctgctgtggagaaaaaataaaaatgtttaaaaattttaaaacaaaaacccaaaactctctgtattattgacatggctg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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