2024-07-06 08:25:10, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS XM_040689385 2851 bp mRNA linear VRT 01-MAR-2022 DEFINITION PREDICTED: Gallus gallus piwi-like protein 2 (LOC107049165), mRNA. ACCESSION XM_040689385 VERSION XM_040689385.1 DBLINK BioProject: PRJNA698614 KEYWORDS RefSeq; includes ab initio. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052594.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2851 /organism="Gallus gallus" /mol_type="mRNA" /isolate="bGalGal1" /db_xref="taxon:9031" /chromosome="22" /sex="female" /tissue_type="blood" /country="USA: Fayetteville" /lat_lon="36.0822 N 94.1719 W" /collection_date="20-May-2019" /collected_by="Nick Anthony" gene 1..2851 /gene="LOC107049165" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 13 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="CGNC:72186" /db_xref="GeneID:107049165" CDS 1..2760 /gene="LOC107049165" /codon_start=1 /product="piwi-like protein 2" /protein_id="XP_040545319.1" /db_xref="GeneID:107049165" /db_xref="CGNC:72186" /translation="
MEPLRPFHHRAAPGGVPGARGRGLPPDVAAAAVVPARPSAPPVPEPAPSPEPLSSLLWSLGFSTRPSSLEPGERPVGRGAFSHAADPPTPPSPAGSDREVGAALPTRGRIQWHSGGGDVLPAVTSPERATALPSAELCPPVPGLQAAAPPGPPQAASKQAPTTKPAPKGTAVPVGLNLVQIHCQNDSVYQYHVTFSPEVECRSARFAMLKEQRAVTGDVTAFDGSILFLPILLPQPLSLKALRRTDGEEISITIQITKVLEPSSDLCIPFYNVVFRRAMRILDMKLVGRNFYDPSKANVLQRYRLQIWPGYSVSIRKKDGGLFLMVDTVHRIIRSESVLALMQSICKQSPSSFHDECTKQLVGSTVLTRYNNRTYRIDDIDWEKTPRDSFTLGSGEEITFVDYYSKTYGITVRELEQPLLVHRPKEKLMLGGKPRLDMVLLLPELTFLTGISEIKKDTRVLKDVMREMLQSPQQHYESLCSLLRRIQCNQEASRELSRWGLILSPDIHRTQGRVLPSERVNLRHCSFIPAEDVSWGREVVREAAISTVDMNCWLLVYPRRLQDVTKNLVALLRSACGPIGMQVNQPALVELKDERLETYVRTIRSILGNEDKVQLLLCITTGTKADVYSAIKKLCCVHSPVPSQVINAHSLLGHSAKLKSIVQKVLLQMNCKLGGELWGVDVPLKQLMVVGMDVSHGKGMRSVIGFVASTNQVLTKWYSRVVFQLPQQEIADSLRLCLANALQQFHEMNHCLPKKIVVYRDGVSDSQLDTVLRYEIPQLQKCFDTFENYSPSMAVLVVQKQMGTNFYTVSSEQHSAAPPGTVVDHSITSTQWQDFFLLAHCPRLGCSVPTRYICVLNTANLSAEHLQRLTFKLCHLYWNWPGTIRVPAPCKYAHRLAFLAGQVLQHEPHARLCNKLFFL"
misc_feature <175..525 /gene="LOC107049165" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature 859..1002 /gene="LOC107049165" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1003..1356 /gene="LOC107049165" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order(1135..1137,1174..1176,1198..1200,1210..1212, 1264..1266,1315..1317,1321..1323) /gene="LOC107049165" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239211" misc_feature 1387..2706 /gene="LOC107049165" /note="PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related...; Region: Piwi_piwi-like_Euk; cd04658" /db_xref="CDD:240016" misc_feature order(1882..1884,1894..1896,1930..1941,1951..1953, 1981..1983,1990..1992,2002..2004,2014..2016) /gene="LOC107049165" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240016" misc_feature order(2077..2079,2083..2085,2281..2283,2680..2682) /gene="LOC107049165" /note="active site" /db_xref="CDD:240016" ORIGIN
atggagccgctgcggcccttccaccatcgcgcggccccgggcggcgtgccgggtgcgcggggccgcggtttgcctccggacgtggccgccgccgcggttgtccccgcgcggccctcggccccccccgtgccggagcccgcgcccagcccggagccgctctcgtccctcctgtggagtttgggcttcagcacgcggccctcctcgctggagccgggggagcggcccgtcggccgtggggcgttcagccacgctgcggaccccccgacgccccccagcccggctggcagtgacagagaggtgggggcagcgctgcccacgcgcggccggatccaatggcacagtggtggaggggatgtgctgcccgctgttacctcccctgagagagccacagcgttgccctctgctgagctgtgccctcccgtgcctggactgcaggctgcagcaccgccgggacccccccaggctgccagcaaacaagcacccaccacgaagccggcgccgaagggaacagctgtgcccgtggggctgaatttggtgcagatccactgccagaacgactccgtctatcagtaccacgtcaccttcagccccgaggtggagtgcaggagcgcgcgcttcgccatgctgaaggagcagcgggcggtgacgggagatgtgacggcgttcgatggctccatcctcttcctgcccatcctgctgcctcagccgctcagcctgaaggcgctcaggaggacggacggggaggagatcagcatcaccatccagatcaccaaagtgctggagccgagctccgacctctgcatccccttctacaacgtggtgttccgcagagccatgaggatcctggacatgaagctggtgggcaggaatttctacgacccgtcgaaggccaacgtgctgcagcggtacaggctgcagatttggccgggttactccgtcagcatccgcaaaaaggacggcgggctcttcctgatggtggacaccgtccataggatcatccggagcgaatccgtgctggctttaatgcagtccatctgcaagcagagccccagcagcttccacgacgagtgcaccaagcagctggtgggcagcacggtgctgacccgctacaacaaccgcacgtaccgcatcgacgacatcgactgggaaaagaccccccgggacagcttcacgttgggcagcggggaggagatcaccttcgtggattactacagcaaaacgtatgggatcacagtgcgggagctggagcagccgctgctcgtccacaggcccaaggagaagctgatgctggggggcaagccccggctggacatggtgctgctgctgccggagctcaccttcctgaccggcatctcggagatcaagaaggacacccgcgtgctgaaggacgtgatgcgggagatgctgcagagcccccagcagcactacgagtctctgtgcagtttgctgcgccgcatccaatgcaaccaggaggcgtcgcgggagctgtcgcgttgggggctcatcctgagccccgacatccacaggacccagggacgcgttctgccctcggagcgggtcaacctgcggcactgctccttcatccccgccgaggacgtgagctggggcagggaggtggtgcgggaggccgccatctccacggtcgacatgaactgctggctcctggtgtacccgcggcgcctgcaggacgtgaccaagaatttggtggctctgctgaggagcgcctgcggccccatcggcatgcaggtcaaccaacccgccctggtggagctgaaggatgagcgcctcgagacctacgtgcgaaccatccgcagcattctgggcaatgaggacaaagtgcagctgctgctgtgcatcaccaccggcaccaaagcagacgtgtacagcgccatcaagaagctgtgctgcgtgcacagcccggtgccctcccaggtcatcaacgcgcactccctcctgggccactcggccaaactgaagagcatcgtgcagaaggtgctgctgcagatgaactgcaagctgggaggagagctctggggggtggacgtccctctgaagcagctgatggtggtcgggatggatgtgagccacggcaaagggatgcgctccgtcatcggcttcgtggccagcaccaatcaggtgctcaccaagtggtattcccgcgtcgtgttccagctgccccagcaggagatcgctgacagcctgcggctctgcctggccaacgcgctgcagcagttccatgagatgaaccactgcctgcccaagaagatcgtggtgtaccgcgacggcgtgtcggacagccagctggacacggtgctcagatacgagatcccccagctgcagaaatgcttcgacaccttcgagaactacagccccagcatggccgtgctggtggtgcagaagcagatgggcaccaatttctacaccgtctcctcggagcagcattcggccgcgccgccggggacggtggtggaccacagcatcaccagcacccagtggcaggacttcttcctgctggcgcactgcccccggctgggctgcagcgtccccacgaggtacatctgtgtgctgaacaccgccaacctgagcgcggagcacctgcagaggctgaccttcaagctgtgccacctgtactggaactggcccggcaccatccgcgttccggcgccctgcaaatacgcgcaccggttggccttcctggccggccaggtgctgcagcacgagccccacgcgcggctctgcaacaaactcttcttcctttaacccggcgctgcggcgctgctttgcttcctttccgtgcgtttctgcccgtcgttcctttggggcgttggaaagtgagtgggggggggggggg
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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