2024-09-29 09:41:29, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_040659257 3262 bp mRNA linear VRT 01-MAR-2022 DEFINITION PREDICTED: Gallus gallus ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant X17, mRNA. ACCESSION XM_040659257 VERSION XM_040659257.2 DBLINK BioProject: PRJNA698614 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052573.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 1, 2022 this sequence version replaced XM_040659257.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3262 /organism="Gallus gallus" /mol_type="mRNA" /isolate="bGalGal1" /db_xref="taxon:9031" /chromosome="1" /sex="female" /tissue_type="blood" /geo_loc_name="USA: Fayetteville" /lat_lon="36.0822 N 94.1719 W" /collection_date="20-May-2019" /collected_by="Nick Anthony" gene 1..3262 /gene="ERC1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 96 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="CGNC:9835" /db_xref="GeneID:418153" misc_feature 1 /gene="ERC1" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 235..3084 /gene="ERC1" /codon_start=1 /product="ELKS/Rab6-interacting/CAST family member 1 isoform X12" /protein_id="XP_040515191.1" /db_xref="GeneID:418153" /db_xref="CGNC:9835" /translation="
MYGSARSVGKAEPSNQSPGRSPRLPRSPRLGHRRTNSTGGSSGSSTGGGSGKTLSMENIQSLNAAYATSGPMYLSDHENVGADTPKSTMTLGRSGGRLPYGVRMTAMGSSPNIASSGVASDTIAFGEHHLPPVSMASTVPHSLRQARDNTIMDLQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVLQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTSEPFVAELTEENFQRLHTEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEIHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQEIAEEKGTQAGEIHDLKDMLEVKERKVNVLQKKIENLQEQLRDKEKQMSSLKDRVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDTYKKDIKDLKEKVGILQGDLTEKESSLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMETQLKKAHEATLEARASPELSDRMQQLEREVTRYREESSKAQAEVDRLLEILKEMENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQVEELMMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQDEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDHLKSSSHSNQTNHKPSPDQDEEEGIWA"
misc_feature 694..2976 /gene="ERC1" /note="RIM-binding protein of the cytomatrix active zone; Region: Cast; pfam10174" /db_xref="CDD:431111" ORIGIN
ggggacggcggggggggagggagaggcggaggcggaggcgaccgggctcgccgtggcgctgacgggcagatgtggtcctggacgttgtgagcatgtgacttcaaagatggacaactggatctattacaaattctgattggccttaagctgacttacaaacactgaagagcttcacgggatttctctcattcctaatttatgcctgtctaattgcctcacaccaccagcttaatcatgtatggaagtgctcggtcagttggcaaggctgagccaagcaaccagagtccagggcgttcaccaaggctgccacggtcaccacgcttgggccatcgtcgaaccaacagcactggaggcagttctggcagtagtactgggggcggcagtgggaaaaccctctctatggaaaatattcagtccttaaatgctgcctatgctacgtctggccctatgtatctaagtgaccatgagaacgtcggtgcagacaccccgaaaagcaccatgactttgggccggtctggggggcggctgccttatggcgttaggatgactgcaatgggtagcagccctaacattgccagtagtggagtcgccagtgatactatcgcgtttggagagcaccaccttcctccagtgagtatggcgtccactgtgcctcactcacttcgccaggccagggataacacaatcatggatctgcagacacaacttaaagaagtattaagggaaaatgatctgcttcgcaaggatgtggaagtgaaagaaagcaagctgagctcttccatgaacagcatcaagaccttctggagtcctgagctgaaaaaagaaagagctctgaggaaagatgaagcttcaaaaatcaccatttggaaggaacagtatagagttttgcaagaagaaaaccagcatatgcagatgactatccaggctcttcaagatgaacttcggatccagcgggacctgaaccaactgttccagcaggacagcagctcgagaaccagtgagccctttgtggcagagctgacagaggaaaactttcagcggcttcacacggagcatgagcgccaggccaaggaactcttcctcctacgtaaaaccttagaagagatggaactgcgtattgagacacagaaacagaccttaaatgcacgtgatgagtccatcaaaaagctgctagagatgctgcagagtaaaggtctgtcagcaaaagccactgaggaagatcacgaacgaacaagacggttggctgaggcagagatgcatgtacaccacttggagagccttctcgaacagaaggaaaaggaaaacaacatgctgagagaggagatacatcgacggtttgaaaatgctcctgactcagccaagacaaaggctctgcaaactgttattgagatgaaggattcaaaaatttcttccatggagcgtggcctccgggatttggaagaggagattcagatgttgaagtcaaatggagctctgagcacagaggagcgtgaagaagaaatgaagcaaatggaggtgtaccgtagtcattccaaattcatgaaaaataagattggtcaggtgaagcaggagctgtcacgcaaagacacagagttgctagccttgcagacaaagctggagaccctcacaaatcagttctctgacagcaagcagcatattgaagttctgaaagagtctcttacagctaaagagcaaagagcggccattctgcagacagaggtggatgcattacgcttacgtttggaggagaaagagaccatgctaaataagaagacaaagcagattcaggagattgcagaagagaaaggcactcaagcaggagagatccatgatctcaaggatatgttagaggtgaaggaacgcaaagttaacgttcttcagaagaagattgaaaatcttcaagagcagctaagagacaaggaaaagcaaatgagcagtttaaaggatcgagtgaaatccttgcaggctgacaccaccaatactgatactgccttgaccacgctggaagaagcacttgcagaaaaagaaaggaccattgagcgcctaaaggagcagcgggacagagatgaacgagaaaaacaagaagagattgacacctacaaaaaagacattaaggacctgaaagagaaagtcggcattttacaaggagatctcacagagaaagagtcatccttactggatctgaaggagcatgcttcatccttagcttcatcgggactgaagaaagattcaaggctcaagacactggaaatcgcattggaacagaaaaaggaagaatgtttgaaaatggaaactcaattgaagaaggcccatgaggcaactcttgaggcgagggccagcccagagctgagtgatcgcatgcagcagctggagcgggaggtaacgaggtatcgggaagagtcaagtaaggctcaagctgaagtggatcgtcttctggaaatcttgaaggagatggaaaatgagaagaatgataaggataagaaaattgcagaactggagagtctcacgtcaaggcaagttaaagatcaaaataagaaagtagcaaatctgaagcataaagagcaagtggagaagaagaagagtgcacaaatgctggaggaggccaggagacgagaagataatcttaatgacagctcccaacagcttcaggtagaagagctgatgatggccatggagaaggttaagcaggagctggagtcaatgaaagcaaaattgtcttctacacagcagtctttggctgagaaggaaacccatctgaccaacctacgagcagaaagaagaaaacatttggaggaagtcctggagatgaaacaagaagcccttcttgctgccattagtgaaaaagatgccaatattgctctgctagaactttcatcctctaagaagaagactcaggatgaagtggctgccctcaaacgagagaaagaccgccttgtgcaacagctcaagcagcagacacagaaccgtatgaagctgatggctgacaactatgaggatgatcacctcaaatcctcatcccattccaaccaaaccaaccacaaaccctccccagaccaggatgaggaggagggtatttgggcataaccagtcagatgctcttagctcagccattttgttcagaacgataattcagcccctcttagaacttgatcagaatcgcagcaagttgaagctgtacattggacatctgacagccctctgccatgaccgtgaccccttgattctgcgtggactcaccccacctgcttcctaccacttggat
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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