LOCUS       NM_205150               1673 bp    mRNA    linear   VRT 12-JUN-2024
DEFINITION  Gallus gallus homeobox A2 (HOXA2), mRNA.
ACCESSION   NM_205150 XM_429285
VERSION     NM_205150.3
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1673)
  AUTHORS   Burge,S., Kelly,E., Lonsdale,D., Mutowo-Muellenet,P., McAnulla,C.,
            Mitchell,A., Sangrador-Vegas,A., Yong,S.Y., Mulder,N. and Hunter,S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1673)
  AUTHORS   Prince,V. and Lumsden,A.
  TITLE     Hoxa-2 expression in normal and transposed rhombomeres: independent
            regulation in the neural tube and neural crest
  JOURNAL   Development 120 (4), 911-923 (1994)
   PUBMED   7600967
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAENSK010000037.1.
            
            On Sep 23, 2021 this sequence version replaced NM_205150.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X74323.1, SRR13267654.194728.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992432 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-563               JAENSK010000037.1  1514931-1515493     c
            564-1673            JAENSK010000037.1  1513221-1514330     c
FEATURES             Location/Qualifiers
     source          1..1673
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="2"
                     /map="2"
     gene            1..1673
                     /gene="HOXA2"
                     /gene_synonym="HOXA-2"
                     /note="homeobox A2"
                     /db_xref="CGNC:49629"
                     /db_xref="GeneID:396055"
     exon            1..563
                     /gene="HOXA2"
                     /gene_synonym="HOXA-2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    77..79
                     /gene="HOXA2"
                     /gene_synonym="HOXA-2"
                     /note="upstream in-frame stop codon"
     CDS             182..1309
                     /gene="HOXA2"
                     /gene_synonym="HOXA-2"
                     /codon_start=1
                     /product="homeobox protein Hox-A2"
                     /protein_id="NP_990481.1"
                     /db_xref="CGNC:49629"
                     /db_xref="GeneID:396055"
                     /translation="

MNFEFEREIGFINSQPSLAECLTSFPPVGDTFQSSSIKNSTLSHSTLIPPPFEQTIPSLNPGGHPRHSGGGRPKASPRARSGSPGPAGAPPPPEYPWMKEKKASKRSSLPPASASASAAGPACLSHKDPLEIPDSGSGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNGEGKFKGSEDPEKAAEDDEEEKALFEQALGTVSGALLEREGYAFQQNALSQQQAQNAHNGESQSFPVSPLTSNEKNLKHFQHQSPTVQNCLSTMAQNCAAGLNNDSPEALEVPSLQDFNVFSTDSCLQLSDAVSPSLPGSLDSPVDISADSFDFFTDTLTTIDLQHLNY"

     misc_feature    266..607
                     /gene="HOXA2"
                     /gene_synonym="HOXA-2"
                     /note="propagated from UniProtKB/Swiss-Prot (Q08727.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    461..478
                     /gene="HOXA2"
                     /gene_synonym="HOXA-2"
                     /note="propagated from UniProtKB/Swiss-Prot (Q08727.1);
                     Region: Antp-type hexapeptide"
     misc_feature    602..772
                     /gene="HOXA2"
                     /gene_synonym="HOXA-2"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    758..850
                     /gene="HOXA2"
                     /gene_synonym="HOXA-2"
                     /note="propagated from UniProtKB/Swiss-Prot (Q08727.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    944..1012
                     /gene="HOXA2"
                     /gene_synonym="HOXA-2"
                     /note="propagated from UniProtKB/Swiss-Prot (Q08727.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            564..1673
                     /gene="HOXA2"
                     /gene_synonym="HOXA-2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agtttaatagtagcgcggtccccatacggccgtaatcagtgaattagaaaaaaaacaccccgccagcgatcttctatgatatatttttttctcctctctctcctttttcccgggccttccccccccgagcccccggcatccgagggaactttttctccgcgggggctgcgagttgaaggccatgaatttcgaattcgagcgagagatcggttttatcaatagtcagccatcgcttgctgagtgcctgacatcttttccccctgtcggtgatacatttcaaagttcatcaatcaagaactcgacgctttcacactcgacactgattcctcctcctttcgagcagaccatccccagcctgaaccccggcggccaccctcgccacagcggcggcggccgccccaaggcgagcccccgcgcccgcagcggcagcccgggccccgccggcgccccgccgcccccggagtacccctggatgaaagagaaaaaggcgtccaagcgatcctcgctgccgcccgcctcggcctccgcctcagccgccggacccgcctgcctcagccacaaagacccccttgaaatccccgatagtggcagcggtggatctaggcggctgaggacggcctacaccaacacgcagctcttggagctggagaaagaattccacttcaacaagtacctctgcagaccgcgccgggtcgagatcgcagcgctgctggatctgaccgagaggcaagtgaaggtctggttccagaaccgcaggatgaagcacaagaggcagacccagtgcaaggagaaccagaacggcgaggggaaatttaagggctcggaggaccccgagaaggcggcggaggacgacgaggaggagaaagctctcttcgagcaagccctgggcaccgtctcgggagcgctgctggagagggagggctacgcgtttcagcagaatgcgctctcgcagcagcaggcgcagaatgcgcacaatggcgaatcccaaagtttccccgtttcgcctttaacgagcaatgagaaaaatctgaaacattttcaacaccagtcacccactgttcaaaactgcctctcaacaatggcccagaactgcgcagctggcctcaacaatgacagtcctgaggccctcgaggtcccctctttacaggactttaacgttttctccacagattcctgcctgcagctttcagacgcggtttcccccagtttgccgggctctctggacagccccgtagatatctccgctgacagctttgacttttttacagacacgctcaccacgattgacttacagcatctgaattactgagaaattaaagacgtcctctcccagggtcctgccttctcctcctcattcctcccctttatgttttttttttccctgtgaattaattttatttcctctcccccccccccccccccccccccctcccggtcgatttgttctgtttgtcccctcccttcgccatgccgttttaccgattctgaccgagttttagctgtcttcggttttaacccagccacgttctaggtccttcgacgaaagcaatatatgaggtctgtaagaaagtgatcgtatagggatcgtatcgtcactttctttttatttttgtattgcattaggatgcgttgtcataagtatttttggtagaataaattcttgtttggtacaa

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