LOCUS       NM_204759               2868 bp    mRNA    linear   VRT 08-APR-2024
DEFINITION  Gallus gallus POU class 4 homeobox 1 like (POU4F1L), mRNA.
ACCESSION   NM_204759
VERSION     NM_204759.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2868)
  AUTHORS   Tang,H., Finn,R.D. and Thomas,P.D.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 2868)
  AUTHORS   Burge,S., Kelly,E., Lonsdale,D., Mutowo-Muellenet,P., McAnulla,C.,
            Mitchell,A., Sangrador-Vegas,A., Yong,S.Y., Mulder,N. and Hunter,S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2868)
  AUTHORS   Lindeberg,J., Klint,P., Williams,R. and Ebendal,T.
  TITLE     Identification of a chicken homologue in the Brn-3 subfamily of
            POU-transcription factors
  JOURNAL   Brain Res Dev Brain Res 100 (2), 169-182 (1997)
   PUBMED   9205808
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000071.1.
            
            On Oct 25, 2021 this sequence version replaced NM_204759.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X91998.1, SRR13267649.252508.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992290, SAMEA3109051
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-187               JAENSK010000071.1  11043283-11043469
            188-2868            JAENSK010000071.1  11043863-11046543
FEATURES             Location/Qualifiers
     source          1..2868
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="4"
                     /map="4"
     gene            1..2868
                     /gene="POU4F1L"
                     /gene_synonym="BRN-3; Brn-3a; BRN-3BRN3; BRN3; BRN3A"
                     /note="POU class 4 homeobox 1 like"
                     /db_xref="GeneID:395521"
     exon            1..187
                     /gene="POU4F1L"
                     /gene_synonym="BRN-3; Brn-3a; BRN-3BRN3; BRN3; BRN3A"
                     /inference="alignment:Splign:2.1.0"
     CDS             68..1093
                     /gene="POU4F1L"
                     /gene_synonym="BRN-3; Brn-3a; BRN-3BRN3; BRN3; BRN3A"
                     /note="brain-3"
                     /codon_start=1
                     /product="brain-specific homeobox/POU domain protein 3"
                     /protein_id="NP_990090.1"
                     /db_xref="GeneID:395521"
                     /translation="

MMSMNSKQAFSMHPILHEPKYPHLHTSSEAIRRACLPAPQIQGNIFAGFDETLLRGAEALAAVDIVSQKTHPFKPDATYHTMSSVSCTPTSSSVHLHHPSVLTTHHPHHHHHQPAQGLEGELLDHLNSALPLGGVPGPDVGSTPSHPHSHMSAINHMAHHSQPMNMSHPHGLASHAVISGPETETDPRELESFAERFKQRRIKLGVTQADVGSALANLKIPGVGCLSQSTICRFESLTLSHNNMVALKPILEAWLEEAERAQREKMTKPEIYTGGDKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFSATY"

     misc_feature    230..262
                     /gene="POU4F1L"
                     /gene_synonym="BRN-3; Brn-3a; BRN-3BRN3; BRN3; BRN3A"
                     /note="propagated from UniProtKB/Swiss-Prot (Q91998.1);
                     Region: POU-IV box"
     misc_feature    611..844
                     /gene="POU4F1L"
                     /gene_synonym="BRN-3; Brn-3a; BRN-3BRN3; BRN3; BRN3A"
                     /note="Found in Pit-Oct-Unc transcription factors; Region:
                     POU; smart00352"
                     /db_xref="CDD:197673"
     misc_feature    899..1069
                     /gene="POU4F1L"
                     /gene_synonym="BRN-3; Brn-3a; BRN-3BRN3; BRN3; BRN3A"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            188..2868
                     /gene="POU4F1L"
                     /gene_synonym="BRN-3; Brn-3a; BRN-3BRN3; BRN3; BRN3A"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggcagacaataccgcgcccccggagccgggcagcccggagcgcccctgccccgctcccagcccaatcatgatgtccatgaacagcaagcaggctttcagcatgcaccccatcctgcacgagcccaagtacccccacctgcacaccagctccgaagccatccgcagagcctgcctgcccgccccccagatccagggtaacatttttgcgggctttgatgagaccttgctacggggcgccgaggctctggccgctgtggatatagtatcgcagaaaacccatccgttcaagccggatgccacctaccacaccatgagcagcgtgtcctgcactcctacctcgtcctctgtgcacctgcaccacccgtccgtgctgaccacccaccacccccaccaccaccaccatcagcccgcgcagggcctggagggagagctcctggaccacctcaactctgccctccccctgggaggggtgccgggtcccgacgtgggctccacgccgtcccaccctcattcccacatgtcggccattaaccacatggcccaccactcccaacctatgaacatgtcccacccccacggcctggcgtcccacgccgtcatctcgggccccgagacagagacggacccacgggagctggagtccttcgccgagcgcttcaagcagcggaggatcaagctgggggtgacccaggcagatgttggatctgcgttggccaacctgaagatcccgggggtgggctgccttagccaaagcacaatctgtaggttcgagtctctcaccttgtcccacaacaacatggtggccctcaaacccattttagaagcctggctggaggaggccgagcgggcccagagggagaaaatgaccaaaccggagatctacacgggaggtgacaagaaacgcaagcgcacctccatcgctgctcccgaaaagcgctcgctggaggcttactttgccgtgcagccacggccctcctcggagaaaatcgccgccatcgccgagaagttagacttgaagaagaacgtggtgagggtctggttttgcaatcagagacagaagcagaaaaggatgaaattttctgccacttactgaagatggggctgggaaggcggcgggggcagtgcctggctctccggctgacgtggcccccccccccccccccagccaatattccccccagaactgggcagggtttgggttgattttttttttgtttgttttgtttacaaaaattgaaaaggaaaaaaaaataggggggggaaaaaaaaaaaacaaaccttaaaagggaaacccacccaaagcgatgcgaacggctcagctcagtgcccgctcctcgccgccgcgggcacagtggccccgctgtcatgactggtacagactgcttttgtagactaaactggaggggggaaaaagtggagaaaatggagaagctgaaatgaaaggtccgggtggggggggggggttggggaggggggagctatgggggtgctcagggccagggcagcggcggtgagagcccgacggggctttgtcgcagcctcttcctggcttgggtaggcaaagggtttggggcaccgctccctcctcagtgtcccgtcttcttctttttaaaaacgaaaaggaaaaaaaaaataacttaaaaaaaaaaaaaaaaaacaaatagaaaagaaagggaacgagctgaagccgccccgacggctgtaaatacgaaggcgccggcccgtgccccccccctccccctaccctgcgctcgctgcccggtccctgcgcgcacacacacacacacgcacttgcatggttttgttcgctgtcccctcgcatttttgcaataatgtttctgtttctacctcatcagctacattaaaaaaaaaaaaaagtttaaaaaaaaaagaaaaaaaaaaaacggaaagaaaaaaaaaataattgtttttggcacttccctggaagtcaccgtttattcggggggaaaaaaagaaaaaaaaaaggaaatttatttcgctttggtttttgcccgtatggtttcactgtaacgtatcctacgcttcgacaatcaaaccagtggggctcccgggggcggcccggggcagcggtgcgcggcgtccccggcagtaccgaactgtgcactttctaaggcaagaatactctttttttttcttcttcttctttgcatatttaagagagaaatttgcctccgaatcctttgttattggcgggtttttcttttttcttttttctttttttttttcgttttattttattattgttattttttaaaacttctgattattattatttaaacgagatttcgtttcgctgtgtgtgtgctgaatgaaatttggtgtctgtgtacgctgcagcatttcaaataaaccatgcacgttttacctcacccccccctcctgcctcctgcacttactgcgcccgggggcgacgccggctccgccgcgggaccccaccgcgtatctccgtccttcctcctccgggccggggagcaacgaaataaggcgagaagcatcgaaagtagcgcttaagcagcgttcagagcccggggctgattttttcccacgcaagccatgcgcgcagcgaagccccacgcgcggatatggggacggagcgaggaacgctcaccgaccgctgtgcctctgagacggaggagtaactccgctcgcatcgaaaccgcaccgaaaaacgcactgcagctgccccgccgccgggctgggggggccgggaggagctgtcagcgggtggggggcacggcacgcaccgagggggtgacggctcctcgggcttttgttttgtaacttcttatttttccaggagaaataaaagcgaacgcaccgcgcgcatcgcggggcggtgctgcaccc

//