2024-09-29 09:38:11, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001398379 6760 bp mRNA linear VRT 08-APR-2024 DEFINITION Gallus gallus PLAG1 zinc finger (PLAG1), transcript variant 5, mRNA. ACCESSION NM_001398379 VERSION NM_001398379.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 6760) AUTHORS Tang,H., Finn,R.D. and Thomas,P.D. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 6760) AUTHORS Pajer,P., Pecenka,V., Kralova,J., Karafiat,V., Prukova,D., Zemanova,Z., Kodet,R. and Dvorak,M. TITLE Identification of potential human oncogenes by mapping the common viral integration sites in avian nephroblastoma JOURNAL Cancer Res 66 (1), 78-86 (2006) PUBMED 16397219 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000043.1. ##Evidence-Data-START## Transcript exon combination :: SRR13267648.8319.1, SRR13267649.190555.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-183 JAENSK010000043.1 13856148-13856330 c 184-283 JAENSK010000043.1 13815738-13815837 c 284-6760 JAENSK010000043.1 13804586-13811062 c FEATURES Location/Qualifiers source 1..6760 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="2" /map="2" gene 1..6760 /gene="PLAG1" /note="PLAG1 zinc finger" /db_xref="CGNC:53668" /db_xref="GeneID:429484" exon 1..183 /gene="PLAG1" /inference="alignment:Splign:2.1.0" exon 184..283 /gene="PLAG1" /inference="alignment:Splign:2.1.0" misc_feature 267..269 /gene="PLAG1" /note="upstream in-frame stop codon" exon 284..6760 /gene="PLAG1" /inference="alignment:Splign:2.1.0" CDS 288..1547 /gene="PLAG1" /note="isoform b is encoded by transcript variant 5; zinc finger protein PLAG1; pleiomorphic adenoma gene 1 protein" /codon_start=1 /product="zinc finger protein PLAG1 isoform b" /protein_id="NP_001385308.1" /db_xref="CGNC:53668" /db_xref="GeneID:429484" /translation="
MATHSPEKTHKCNYCEKMFHRKDHLKNHLHTHNPNKEAFKCEECGKNYNTKLGFKRHLALHAATSGDLTCKVCLQTFESTGVLLEHLKTHAGKSSGGVKEKKHQCEHCDRRFYTRKDVRRHMVVHTGRKDFLCQYCAQRFGRKDHLTRHMKKSHNQELLKVKTEPMDLLDPFTCNVSVPIKDELLPVMSLPSSELTSKPFTNTLQLNLYNTQIQSMQSSASAHQMVATSLPLGMPCPIDMESVHPSHQLSLKYPLSSTSYAVSMPEKEQPLKGEIESYLMELQSGMPSSSQDSQASSSKLGLDPQVGPLDDGSGEVSLSKGSVPISEPLNTPSLDFSQLFNFIPVNGPPYNPSVSVGNLGMSYTQEEAHSSMTQLPPQTQDPQDPSNSIGLGSLHSLSAAFTSSLSTTTTLPRFHQAFQ"
misc_feature 315..>461 /gene="PLAG1" /note="N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Region: SUF4-like; cd20908" /db_xref="CDD:411020" misc_feature 315..383 /gene="PLAG1" /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096" /db_xref="CDD:395048" misc_feature 321..398 /gene="PLAG1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 321..383 /gene="PLAG1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(336..338,366..368,387..389,393..395,405..407, 426..428) /gene="PLAG1" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:411020" misc_feature 408..461 /gene="PLAG1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 495..557 /gene="PLAG1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(510..512,516..518,522..524,528..533,540..545, 552..554,615..617,621..623,633..638,645..650,657..659, 699..701,705..707,711..713,717..722,729..734) /gene="PLAG1" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 600..662 /gene="PLAG1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 684..740 /gene="PLAG1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN
gtgtgcggcaggctgggctgcaccgcagcgcatacactacaatggctgctggaaggacgggaaagcaaacaatttccaggcccgccgcgtccagcccgaaatatggggaaaaaattacagaaaaatcggagaacactgtaaagggtggaaacggggcgcagaggggatgctgaggctcccgcgaccagtaaaaatgggaagtactggattctggtttcctccaagaagagtcagcggaactggttaagaccaaaatctgaggactttagtgggcaaacatcaggcatatggctactcattctcctgagaaaacccacaagtgtaattattgtgagaaaatgtttcaccgaaaagatcacctaaagaatcacctacatacacacaatcccaacaaagaggcctttaagtgtgaagaatgtggaaagaactacaataccaagcttgggttcaaacgtcacctggctttgcacgctgcaacaagcggtgacctcacctgtaaggtatgtttgcagacttttgaaagcacaggagtgctgctggagcacctaaaaactcatgcaggcaagtcatcgggtggagtgaaggagaaaaaacaccagtgtgaacactgtgatcgtcggttctacacccgaaaggatgtccgtagacacatggtagtgcacactggaagaaaggacttcctctgtcagtactgtgcacagagatttgggcgtaaggatcacctaacgcgccacatgaagaaaagtcacaaccaagaacttttgaaggtcaaaacagagccaatggaccttctagatccctttacctgcaacgtttctgtgcctatcaaggatgagctgcttccagtgatgtcgttaccttccagtgaactgacatcaaagccatttacaaacactttgcaattaaatctctacaacactcagattcagtccatgcagagttctgcatctgcacaccaaatggttgccacgtcgttaccattgggaatgccttgtccaatagatatggagtctgtccacccttcgcaccagctatcattgaaatatccgctcagttctacctcatacgcagtttctatgcctgaaaaagaacagcctttgaaaggggaaatcgaaagttacttaatggagttgcaaagtggtatgccttcttcgtcccaggattctcaagcatcttcatcaaaactagggctggatccacaagtagggccgctagatgatgggtctggggaggtttccctttccaagggctctgttcctattagtgaacctctaaacaccccgtcattggacttttctcagctgttcaacttcatacccgtcaacggccctccctataacccttctgtttcagtgggaaaccttggaatgagttatacgcaggaggaggcacattcttctatgactcaacttccaccacagacacaggatccacaagatcctagcaatagtataggtcttgggtctctgcactcgttgtcagcagctttcacgagcagtctaagcacaaccaccaccctaccacgatttcatcaagctttccaataggatgtacaaagctggcttgttactgtctatttgtagaaatgccttaggtgaccatttttaacttagtgcctactataagacattatcagttctctgcttttgtacagtaccaatctcatgaagccagtaagaaatttaaatctttaaaaatgttttggaagtgtttattctcagctgtgtttacttcattgtttttttgtttttgtttttttttttaagtctcattgtattgttttcattttcactgccaattgacacatttaaaatgtccactagaaaggcatcccaagcaaactttcaacacgcatcccttttttaaaaaccttttcaaccttacagccacttctgttctgttgatgtcagtggtggaactaccatttttaccttttatatattacagcatttgcaaaggatccagttcaaacgtgtatcacaaaggttcctgaagattcgggaaaaaagtttctccggtccctttccaaaaaaaccctcttcccaaatggtgacatctgatctgttctataatgacaaattgtaatttttaaataaaggtagaattcagatttttctgaaaatttggatgtgtatatatagaagtccatatatacacatgtacatatatataacgttttgacttatattgaagtcattataaaaggtgttaggaattttgccattttctggcttaaatctttgtggcttgttatgaatattggaagaaaaaaaatacagtttaattttctaaaatcatggctgaacagaacttcaacagagaatctctgcttgcctaactgacaaaagtttcaagttgaatttggaactgtgttgtgctttcatgactctggtagaggaaaacaggcaaatttaatggctgatcttgaaatataaaagtgttgtaatttagtaatgcagaatattttgtcgcagtttttgttttgattcttaacttgctgtttttttctctttagtagcatagaaagagtactgcataggaatcttccaatagtgtactgacatttgtaggcatcggtcttctcccagctgccaccaccaaagggtggatcaagtccagccagaaagtgtgtatctattttcagttcaatattagtgtgcggtcagagagtgaatgtaaatttacaaataccatttttggggctttttttttttttttttttctattggaatgaacttttcagctgtgttacatggtgtgttatgtcctcctaagcaacaagttagatgttaatcatactttctacacctgggtacttggttagggactttttgcccactgccaagatttaaagacaggactcttaggagtgaagtaaaagcatattgcttacaccacttttgcctaatgcaatattttctattccccaacccctaataaccaaaagaggaaaaaaggaaaaaaaaacaaaaacaaaaacaaacctgtgatgcatgaaagcaaactcgagttgctgtaattcaacaataacacgcttttccttgtcatttttgtacaaggaattaaaaaatagaaatcgagtacatttgtatctctcaaacaataatgaggattcatacgaggttttaagtggttaaactaaatatacttcacagaaacaaaagttgctcccatttaaggagctcgtgctccagatgttttatcagtagctcctacttttttttaattctaggagcaatatgcaggtgtagttttactattttatacatatatgtatttaaattttattactgaaagataacatttttataaatgtgtttgtgttccaaaggcattaaaataaggatgtattgataaggaaaataccttttgaaattctacaaactgctcctaaatgttgggtttaggagctcgttatctcaaagtgggcttttagctctgcttcatgactgcttcctctggtttctatgaaacagatcgcttgcttacttacatctttagttgaatgattcgttcaatattgctttttttttttttcttctttttctcatcacctttataaaggaaagaaaaacacaggtgaacagagcacaaggtgaacgccacagaatgtatttctggttaaaaatcagcaaccacaatgcacatagggacaacttggctttcctctgagtcttttcaggcaatttgggatgaagagcaacggcctcccttgctcctgtgagctctgatccacgtgaagcagagcccagcagctccccgtgagcggagggatgccgtgacgctcggctctggcagcggctgcggagtggataggccgcgctcttcttcctggcgatgatgcacacaggccttgggagcttcagctctgtgagcaatttttggatggcctggaggaagttccttggtcgagtgtcacaaataagttcagactcctctgccgctgccagatgcttggccaggctgctcgctgaggggacttgatgtggcacatgtaccgctcggcgcagggcagtgccacctgcttatcaggcccagctgccgatcagactcgattaaaaaaacccaacaaacgcttggccaacacccagttcttagtacttagccggagaccttactacttggttagtgccttagcttcctgagaaggggttgacatttcactttggagatagacgtacatttcagtggaggagcagggacctcagacaaggtattgaacctcattcagtcagggctgcggccggcggctgcactcggcctgtgccgctgagctaggatgtaggacggtgtggaagcagatgtgacactgtaagcaatattaacacattagtgcttttggatatcatttaggcagagtcagtattggccactactaaaacgtcacgttttaaaccctgttttctaggtttcagattggttctttgagggaggggggagggctggctgatcgtgcaccactctttgtgcaacttcgagacttctagtgaggtttgttgggttttttttttgtttgttttttcttttttttttttttctgttccgttctgtttgggttttgttgtgttttttttttttttttttaaatatatatatttttgtgtacttgttgcttgtgcttaatttagtagtaaattgtggaatagagtgatttattgttaatttggcagtagcggttttttaaaaccatatactgactgaaacatgagccagagctgattgctttattaagctaataatgaatgttaagagtacatattttcaggatcatttgcctagtgagctaaacatgtattataggccaatattttttaaaataaagcttggtcaacctctatgttacacatattacaagatatagcactttcaaaagaaaacctaaaccttttaagaaagtttcttacaggttatgctttttattataaaaccttttattataatttgtttcaagtgccattagattacatatatgtaggcctttggtataatgctttgtgtacaaaatggtagacattgtaattttaaacaggtacatttttacagtgttttcttatcaatttgctatattgcacagaaccagtgtgtctttcttaagggttttacaatggtttttactaggtttacacgtttcaaactacactgtcttctactgccattttgaataccagtcaaaaaaaaaaaaaaaaaaagaaaaagaaaaggaaaaagaaagagtttgtcctcaccaattgtaatttgtgtcctctggagttctgggtggtaactattgcaaaaatatttaacacgcagtatttgatgcagatgttttttttttatcatatgctctcaacactatgctgctgtctgaagttaacttagggcctgatcctgcatccgtaaacgtcaaggggagcagggctgcatccttcgttatgtctgtctcatacactggtttagcagctcatcctgtattcttctcagtctatagataagcctccaaagtaaatgtacttacctggtatgtagtaaactgtatagacttagctgcccattctgcatcttcccagtgtacaattaaaaccataggcattagcattacactcagcgtacaaacaatgccacagtagttcaaaatgtgtttggatagtcccaaagctttatgtaataagggtgtcttactttgttggaaggcagtgtcttttgataacagttatctagccctggaagtgacacagaactattgctaatcatatgtaaacacttttcagtataagcttcagtggtacagtcgaaccagagtgaatgtttatctcctcagaaacactcctgcaatattgttatattggatcatgctgctaatgtaacttgggatacaactcctctcatggtgctacaaacctccctgtctcattcagatgtatttttacccatagaaaaaaggactatactagacctatagttgtatgatatatttttatactgtgacttaatttgtcattaatgaactttgtacaacaccacaatgtattcatatgcacttgcagaagtaaaatgtcggacatgcaaatggaaacgctgacaagcccagctcttgttcacagaaacaggtggtttagttaaaattcattgcgggctttttatatggtgtggagtgaagaacctactatatattactaaaagcttctgaatttagacaaaaactgggaaagagtatattggggaatgatgacacacccaaacctgactcggattgctgaaattctattttttagctagtgggaaaattgttcggactcgaatgctaaaatgttttaatgataaaattttttttgagtcaaaaatagagaaaaaaaaaagaacacagaaaaccctgcattccagacagaatttgtgtatgtttcttgcatttaaaatttgctatcctgtgatatgggaaattgagttgcttatcatgtatatgtactttaaaatgtattcacaaactactgttgtatttgtataaaatatagacaaaaagattgcgtatatatttttgtgtataagctctgtaaaatagcaatcacattatgaagctgcagcagaacttcattttaaacattcacatccaaagaaacagactatttattgtccacataccctgattataaaatataccttgctgctattaaacaatagtgctgcagcttcttgtggcctacagtgttatgtttgctgtacaaaaatatgtgaactccacaaaatatatcaataaaattacagaatggttttagttaatgaataa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]