2024-09-29 09:36:15, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001396845 3260 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus UBX domain protein 2A (UBXN2A), transcript variant 2, mRNA. ACCESSION NM_001396845 XM_040697219 VERSION NM_001396845.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 3260) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 3260) AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P, Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci P, Hayashizaki Y and Buerstedde JM. TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis JOURNAL Genome Biol 6 (1), R6 (2005) PUBMED 15642098 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000070.1. On Oct 25, 2021 this sequence version replaced XM_040697219.1. ##Evidence-Data-START## Transcript exon combination :: SRR13267649.203270.1, SRR13267647.3445.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-72 JAENSK010000070.1 2315594-2315665 73-265 JAENSK010000070.1 2316228-2316420 266-318 JAENSK010000070.1 2318178-2318230 319-454 JAENSK010000070.1 2319612-2319747 455-564 JAENSK010000070.1 2321357-2321466 565-705 JAENSK010000070.1 2322978-2323118 706-870 JAENSK010000070.1 2328358-2328522 871-3260 JAENSK010000070.1 2331177-2333566 FEATURES Location/Qualifiers source 1..3260 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="3" /map="3" gene 1..3260 /gene="UBXN2A" /gene_synonym="UBXD4" /note="UBX domain protein 2A" /db_xref="CGNC:12353" /db_xref="GeneID:421973" exon 1..72 /gene="UBXN2A" /gene_synonym="UBXD4" /inference="alignment:Splign:2.1.0" exon 73..265 /gene="UBXN2A" /gene_synonym="UBXD4" /inference="alignment:Splign:2.1.0" misc_feature 260..262 /gene="UBXN2A" /gene_synonym="UBXD4" /note="upstream in-frame stop codon" exon 266..318 /gene="UBXN2A" /gene_synonym="UBXD4" /inference="alignment:Splign:2.1.0" CDS 287..1159 /gene="UBXN2A" /gene_synonym="UBXD4" /note="UBX domain containing 4" /codon_start=1 /product="UBX domain-containing protein 2A" /protein_id="NP_001383774.1" /db_xref="CGNC:12353" /db_xref="GeneID:421973" /translation="
MDNIKTVKEEWMCKSRTGDQILNGTEQNHDYFVDNLFEEAQKIGAICMSPTTVKNQVDVIIKLWKNGFTVNDGELRSYTDVGNQQFLDSVKKGELPFELQKVFEKEEVDVKVEDKKDELYLSSKKPIFHPFSGHGYRLGSATPRIISKAREDHQGAADKRCLPVVPLNDLEPITNIQIWLADGERIIQKFNVSHRISHVRDFITKYQGSEGGVPFMLTTSLPFRELQDETLTLQEAKLQNAVVVQRLRKTTEPFRLLAMKAPDDDCKTAATPNGRLKNEQKNAMKSTSSN"
misc_feature 467..694 /gene="UBXN2A" /gene_synonym="UBXD4" /note="SEP domain; Region: SEP; pfam08059" /db_xref="CDD:462348" misc_feature 785..1036 /gene="UBXN2A" /gene_synonym="UBXD4" /note="Ubiquitin regulatory domain X (UBX) found in UBX domain protein 2A (UBXN2A) and similar proteins; Region: UBX_UBXN2A; cd17160" /db_xref="CDD:340680" misc_feature order(809..811,815..817,821..826,833..838,842..844, 944..949,953..955,1001..1012,1016..1018,1022..1024) /gene="UBXN2A" /gene_synonym="UBXD4" /note="putative UBX-p97 interaction site [polypeptide binding]; other site" /db_xref="CDD:340680" exon 319..454 /gene="UBXN2A" /gene_synonym="UBXD4" /inference="alignment:Splign:2.1.0" exon 455..564 /gene="UBXN2A" /gene_synonym="UBXD4" /inference="alignment:Splign:2.1.0" exon 565..705 /gene="UBXN2A" /gene_synonym="UBXD4" /inference="alignment:Splign:2.1.0" exon 706..870 /gene="UBXN2A" /gene_synonym="UBXD4" /inference="alignment:Splign:2.1.0" exon 871..3260 /gene="UBXN2A" /gene_synonym="UBXD4" /inference="alignment:Splign:2.1.0" ORIGIN
gcagtggagcgcgggacagtgaggacttggtgcgctgcggaggccgcgggcggtgctgcgctgcggggccggctggaagctcagctctgcgatacgtttgtcacaaaaggcgtaccgaagctcgcagcgctgtgggtgacgtgtgggcacgtctctgtgagaagttggcaggatggagccgcttcctccgcagcgccccgggttcggctggtcgctgtgccccagtggctccttgctcgtgaccaccaacacgacatattagcacgaggagcctcaggatgaaaacatggacaatatcaaaactgtgaaggaagaatggatgtgtaagtcaagaactggtgaccagattttgaatggtacagaacaaaaccatgactattttgtcgataacctttttgaagaagctcagaagatcggtgcgatatgcatgtctccaactacagtcaagaaccaggttgatgtgatcattaaactttggaaaaatgggtttacagtaaatgatggtgaacttagaagctacactgatgttggaaatcagcagttcttggactccgttaaaaaaggggaactgccttttgagctacagaaagtatttgagaaggaggaggtagatgtgaaggtggaagacaaaaaagatgagttgtatctgtcatcaaaaaagccaatatttcatcccttttctgggcacggttacagattaggaagcgctactccaaggataatctctaaagcaagagaggatcatcaaggagctgctgataaaagatgccttcctgtagtacccttaaatgacttggagcctatcactaacatccagatctggttagcggatggggagaggataattcagaaattcaacgtttcccacagaataagccatgtcagagacttcataacaaagtatcaaggatcagagggaggtgttcccttcatgctgactacttcgctgccctttcgagaactgcaagatgagacgctcacactacaggaagcaaagttgcaaaatgctgttgttgttcagagacttcggaaaacaaccgaaccttttagactgttagcaatgaaagctcctgatgacgactgtaaaactgctgctacacctaatggacggctcaagaatgagcaaaaaaatgctatgaaaagcacaagttcaaattagtttattactgactgaaagctacacacaggcagaactagacaaaatgtaatcagcaatatctggatgcactaccattcttacctagtgtgatcttagagagcaaatgtgtgctgtgctgtaatctgctgtaacaaaaatattttcaactaattttggtgatcagagcctggctgaataatgcagcagaggtaactgtacggcagggattgtccttatgatttccttggctttgctagcatgttcttcaatgagtatacttaggtagaatggtactctgagacttaattactactggtaacacattttaggggaaaaaaaatatttatttttgcactttagattaaagagaaactgaactggttgacttaatttatacttcaatataaattgctccagtttccctttgtgttttagtaacaggcaatagatgctgcagggaagttcacatttgaactcctcgaagtattttgaaaatcattgtaagtatcattagtatttaacttcatcacgagatccgcagtgtgaatgtcctattaagtcttcacatgatggtaggtgcatgtgtaagaagattgaaattagctagcatggtgcatactggatatgaagtgcctcaaagtaagctctgaaggaatcgttactcctagtggttgaagtgttttctgtctctcatgttctgctacagatgtcttacagacagggtgatgttagactgcctggctcactaggatagagatctgcttttagcctcgtcacagagaaacttcactttttctgcagtttgccaagaggctgtagtggcttaggaggacacagttgtttttgtactacatatctgtctctgtcctgaactagccatctgatgagatgtcaactgcatgtagacaaacttcaaagatatctaaaatccatatttgaaaatcgcgacttcttctccactcttccactccctttccatccaaattctattttttttttgtccttgtattttggcgtaagatttatacccaaccatcccatgttttgctaaaggagaacattaaggactaaatatatatattttgtactggttgtgttaaatcacacatgggtttgtgtatggaactagagtctcttggtaaagactttcttggggtcttcaataaatgctgactagtttgtgctacctacacaaatgggtgattgtcagagttgaatttcttttgcatggttaaagataactttgggcttctctgttcttgttttgtatagaaaattatttaattgagatgacttgaattttttctaaaagtcctgttacttcatgctaaggatgcacttatttcatttacaggaatgtaaaactgtcaattttgtttcagaatctctctcacagtcacagtatggctgaggttggcaggggcctcacagggtctgtctgatccaaccagaggaactcagagaactcaaagcagaacacccagcaccacatccaggtggctcttaagagatctccagggagattccacagcctccctgggcaactttgcatgtgctgaagcactgagaagtacatttgaggacagtcaaatcaaagtcaactgcacaaataactgctcagtgtattcaaaaagtgaatatctgaaagctatgcagcctggtatgcactgttttcagtgctgtggacttgacgggtttatatcattcaggtttgtgtagcaaattatacaactgaattttgttttctcttccattctctcctctgttacatgtgaagcctgcctgatctctagtggtaggaaaaaatatccagacaaatcccttgataaaactgaagagacacgtcacctacgggcatatattctacccttagcttgcagggcttcctggacagtggcttttattcatcagtgcttttggatttgtcttaatggaaaaccaaatattggagaaacacacatttgattgtgaacacagttattcttacctaaaaagattaatgtaacctcgaagtagcagtacactgttcctgcgtttacagtggaaattaaatgaaaagattatgaaatgtttatgtaagatggaatttaaaaggaggaaatacagtgttgagataggtaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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