LOCUS       NM_001396623            1449 bp    mRNA    linear   VRT 12-JUN-2024
DEFINITION  Gallus gallus homeobox D10 (HOXD10), mRNA.
ACCESSION   NM_001396623 XM_001234538 XM_040675618
VERSION     NM_001396623.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1449)
  AUTHORS   Tang,H., Finn,R.D. and Thomas,P.D.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 1449)
  AUTHORS   Burge,S., Kelly,E., Lonsdale,D., Mutowo-Muellenet,P., McAnulla,C.,
            Mitchell,A., Sangrador-Vegas,A., Yong,S.Y., Mulder,N. and Hunter,S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1449)
  AUTHORS   Boardman,P.E., Sanz-Ezquerro,J., Overton,I.M., Burt,D.W., Bosch,E.,
            Fong,W.T., Tickle,C., Brown,W.R., Wilson,S.A. and Hubbard,S.J.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr Biol 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000236.1, JF317543.1, BU294021.1 and CR353211.1.
            
            On or before Oct 25, 2021 this sequence version replaced
            XM_001234538.6, XM_040675618.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13267650.1311.1,
                                           SRR13267657.17875.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992290, SAMEA103992428
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-188               JAENSK010000236.1  8564672-8564859     c
            189-339             JF317543.1         1-151
            340-342             BU294021.1         51-53
            343-746             JF317543.1         155-558
            747-978             BU294021.1         458-689
            979-1113            JAENSK010000236.1  8562387-8562521     c
            1114-1449           CR353211.1         1-336
FEATURES             Location/Qualifiers
     source          1..1449
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="7"
                     /map="7"
     gene            1..1449
                     /gene="HOXD10"
                     /gene_synonym="Chox-4d"
                     /note="homeobox D10"
                     /db_xref="CGNC:56632"
                     /db_xref="GeneID:771246"
     exon            1..796
                     /gene="HOXD10"
                     /gene_synonym="Chox-4d"
                     /inference="alignment:Splign:2.1.0"
     CDS             55..1074
                     /gene="HOXD10"
                     /gene_synonym="Chox-4d"
                     /note="Hox D10; chox-4.5; homeobox protein Hox-4.5"
                     /codon_start=1
                     /product="homeobox protein Hox-D10"
                     /protein_id="NP_001383552.1"
                     /db_xref="CGNC:56632"
                     /db_xref="GeneID:771246"
                     /translation="

MSFPNSSPAANTFLVDSLISACRSDSFYSNSASMYMPPSTDIGTYGMQTCGLLPSLAKREVNHQNMGMNVHPYIPQVDSWTDPNRSCRIEQPVTQQVPTCSFTTNIKEESNCCMYSDKRTKLISSDVPSYQRLVSESCPIENPEVPVPGYFRLSQTYATGKTQEYNNSPETSSTVMLQLNPRGSSKPQLSSQLQMEKKMNENPNGQDGAAKVSQVESPEPKSTLQDERSCLPEGSVSSPEVQEKETKEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENRIRELTANLTFS"

     misc_feature    850..1020
                     /gene="HOXD10"
                     /gene_synonym="Chox-4d"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            797..1449
                     /gene="HOXD10"
                     /gene_synonym="Chox-4d"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agagatgtcagcctacaaaggacacaatctctcttcctcaaattcctccccaaaatgtcctttcccaacagctctcctgccgctaatacttttttagtagattctctcatcagtgcgtgcaggagtgacagtttctactccaacagcgccagcatgtatatgccacctagcacagacattgggacttatgggatgcaaacctgtggactcctaccgtctctggctaaaagagaagttaatcaccaaaatatgggtatgaatgtacatccttatatacctcaagtagacagttggacagatccgaacagatcttgtcgaatagagcaacctgttacacagcaggtccccacttgttccttcactacaaatattaaggaagaaagcaattgctgcatgtattccgataagagaaccaaactcatttcttcagacgtcccttcctaccagaggctggtgtctgaatcatgccccattgagaaccccgaggttcccgtcccaggatattttagactgagccagacctacgccactgggaaaacccaagagtacaataatagccctgaaacgagttcaaccgtaatgttacagttaaaccctcgcggcagctccaaaccgcagctatcttctcaacttcagatggaaaagaaaatgaatgaaaacccgaacggccaggacggcgcggctaaagtctctcaagtggaaagtcccgagcccaagtccacgttgcaagacgagaggagctgcctgcccgaaggctccgtgtccagccccgaggtccaggagaaggagactaaagaggaaatcaagtctgatactccaacgagcaattggctaactgcaaagagtggcagaaagaagaggtgcccttacactaaacaccaaacactggaattagagaaagagttcttattcaatatgtatctcacccgagagcgccgcctagagatcagtaagagcgtaaacctcactgacaggcaggtcaagatttggtttcaaaaccgcagaatgaagctcaagaagatgagcagggagaaccgaatccgagaactgaccgctaatctgaccttctcctaaggcgttcccgggggtggcaacagcgagcagtgggcacggcaccgccggtgccacgtgggggagagactgtggcagaaccgtccttttccttttattttctggtagaatgtgactcttcgtccttcttttagcgctgcaagtgaatatgtattactatgacgagtatatataaaacctagcacgtgtaatttatttttgttctcatcgtaatgcagggtaactattattgaatattatcatttggtcttaacttattggaactgtcgaacatccaagcaatgtgactttttttttcatgtttttactaacaaaatggtatttatgtggggctgttacacgggccataacgtttggagtacgttcactactttaaga

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