LOCUS       NM_001396618            6471 bp    mRNA    linear   VRT 08-APR-2024
DEFINITION  Gallus gallus diencephalon/mesencephalon homeobox 1 (DMBX1), mRNA.
ACCESSION   NM_001396618 XM_001234035 XM_040678500
VERSION     NM_001396618.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 6471)
  AUTHORS   Tang,H., Finn,R.D. and Thomas,P.D.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 6471)
  AUTHORS   Burge,S., Kelly,E., Lonsdale,D., Mutowo-Muellenet,P., McAnulla,C.,
            Mitchell,A., Sangrador-Vegas,A., Yong,S.Y., Mulder,N. and Hunter,S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000239.1.
            
            On or before Oct 25, 2021 this sequence version replaced
            XM_001234035.4, XM_040678500.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13267655.160872.1,
                                           SRR13267659.241101.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA3109051, SAMN02738222
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-233               JAENSK010000239.1  10627850-10628082   c
            234-399             JAENSK010000239.1  10616320-10616485   c
            400-578             JAENSK010000239.1  10612738-10612916   c
            579-933             JAENSK010000239.1  10611204-10611558   c
            934-6471            JAENSK010000239.1  10605192-10610729   c
FEATURES             Location/Qualifiers
     source          1..6471
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="8"
                     /map="8"
     gene            1..6471
                     /gene="DMBX1"
                     /gene_synonym="ATX"
                     /note="diencephalon/mesencephalon homeobox 1"
                     /db_xref="CGNC:7944"
                     /db_xref="GeneID:395271"
     exon            1..233
                     /gene="DMBX1"
                     /gene_synonym="ATX"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    30..32
                     /gene="DMBX1"
                     /gene_synonym="ATX"
                     /note="upstream in-frame stop codon"
     CDS             75..1334
                     /gene="DMBX1"
                     /gene_synonym="ATX"
                     /note="paired-type homeobox Atx"
                     /codon_start=1
                     /product="diencephalon/mesencephalon homeobox protein 1"
                     /protein_id="NP_001383547.1"
                     /db_xref="CGNC:7944"
                     /db_xref="GeneID:395271"
                     /translation="

MLPPGRWQLRRARRQRGGNADGWSRAGRGAAPRPFPTRVPAPTAGGEASPPPQVDVAMQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLADIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKDCESSHSEGKTEPPVLETQSTIPDTEKTQSIPSEVSTDLNLTLSEQSASESAPEDQTDREEEFKSTLDEAKVDKSPGVDGKALNCKRASPKSESPISATVTPSSSSGLAQTHSYSSSPLSLFRLQEQFRQHMAATNNLVHYSSFEMGTPSAMPYLGMNVNMAPLSSLHCQSYYQSLSHAQQVWSSPILQASSSLPSLNSKTTSIENLRLRAKQHAASLGLDTLPN"

     misc_feature    444..614
                     /gene="DMBX1"
                     /gene_synonym="ATX"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            234..399
                     /gene="DMBX1"
                     /gene_synonym="ATX"
                     /inference="alignment:Splign:2.1.0"
     exon            400..578
                     /gene="DMBX1"
                     /gene_synonym="ATX"
                     /inference="alignment:Splign:2.1.0"
     exon            579..933
                     /gene="DMBX1"
                     /gene_synonym="ATX"
                     /inference="alignment:Splign:2.1.0"
     exon            934..6471
                     /gene="DMBX1"
                     /gene_synonym="ATX"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggtggaggaccattgaaaatcctgctgggtagctcccgggtcgttctgaagctccttttaaaaatccttcttcaatgctgcctcccggtagatggcagctccgccgggcgcggaggcagcgcggaggcaacgcggacggatggagtagggcgggccggggcgccgcgccgcgcccgttccccacgcgtgtccccgctcccaccgcgggcggagaggcttcgccgccgccccaggttgatgtcgccatgcagcactatggggtgaacggatactccctgcatgccatgaactcactgagcgccatgtacaacctgcaccagcaggcagcccagcaagcacagcacgcgcccgactaccggccctcagtgcacgccctcaccctggcggagagactggctgacatcattttggaggcacgttatggatcccagcaccgcaaacaaaggcgaagtcgcacggccttcactgcccaacagctggaggcactggagaagaccttccagaagacacactatccagatgtagtgatgagagagcggctggctatgtgcacaaatctgcctgaagccagggtccaggtttggttcaagaaccgaagggccaaattccggaagaagcagcgtagcctccagaaggagcagctgcagaagcagaaggactgtgaaagcagccacagtgaggggaagacggaaccacctgtgctggagacccagtccacaatacctgacactgagaagactcagagcatcccaagtgaggtgagcacagacctcaacctaaccctgtcggagcagtcagccagtgaatcagcgcctgaggaccagactgacagagaggaggagtttaagagcaccttggatgaggctaaagtggacaagagtcctggtgtggacggcaaggctttgaactgcaagagagcgagcccaaaatcagagtctcccatcagcgcgaccgtgactccttcatctagcagtggcctggctcaaactcactcctactcctcctcacccctgagcctcttccgcctgcaggagcaattccgccagcacatggcagctaccaacaacttggtccattactcctccttcgaaatggggacaccgtctgccatgccctacttgggcatgaatgtcaacatggcgcctctgagctccctgcactgtcagtcgtactaccaatctctctcccacgctcagcaggtctggtcctcacccatcctgcaggcctccagctctcttccaagcctgaacagtaaaacaacaagtattgagaacctaaggctccgggcaaagcagcatgcagcatcccttgggcttgacaccctacccaactgactgccagatgggcaaccgttgcccataagaagatgcaccggaggtcagcaccagacatgtcactcctggaaccccttccaccctcatctcttcctggagtaaggtgctccctatcagggaaaactttgcattaactaatgtcttactagcaccgcaattgcatcagacactgctactggcttggtcttctttaaatatttgaggaggaagagggagaggatgtgtgtttagacagatgaactgtccctttggactgctgtgagttaagcctgtaacattcagaaagagctccctcacctcatccctgcgataatgtgccaaccgtgttatatacacccttttttgttgtcgatgcattctttgggaaaacaaagagtcctgctttgtcttgtacatagtttacaatgttgaaagcatccaccgcccgtgtgttactgtcagtgttacagaactgtggcctcttttgcttttattcccccttctctctcagttttggtagctagtcccaaagtcacaaatcagccacgctcccaacacagctagttgctcttcttgggttcagagtcttaatggtgcttagagcaaagaaaaaccattatgcaattcactgctccacttctctcttctctgctaaagctgatattataacggccaggaaatgatgcaacagtgaatttcctgtttaagcacttccaaaaaggcaagtgttttttcctttactttctaatagcacttgttcacagacagaggacaaaatgctggccaaatgctgctggctggggagaaaaatgaaagccaaattcacatggttacttttgacttgattgtttcctctttggtcttcagtgaagtgtaaactcccccatttacaaattatggggttttctttttggagagcattttggtctagcttcgacaatagagaacaataaaaacttggtatgaactcccactgtgttcatacaccatgaattatatggttccttgacaaaaccacgattaatgcaagctgttcttagaaaaacgctccgatcaccaaattctaccctcaagctgtgcagcttcagaccctgcttagcaagtgagaatgtaacaagtgaaaaatgctgcaatgctggaggccaagcggggtgataatcgggggctttctattccctgcagcgaggagtagattggcttgccaaaagtaccatgtccccaagcaaccaaaactcaccaactgcaaagtgatttcagtccacagttttggcctcatttctctggaatgacccttcattttagtaatccacccagagtgtttttccttcttgagaagcgacttttctaccaacccaaaggacttttttatttatcttctccaaaccaaataaatcctttgaactcaccataccaagaagcagggagggaggaaacccagatctaatctagtattgcctaggaccaaaaatgcagactggctctgtggcaggtgctaggttggaatccaaagggtgtcaggcgggtctgccactaacacgcagcagagctgggctaattcactgcaggccatcatctggtccctgctcgatttaaagaagaaatggagaggcaacgtgtgcatagcctacataacttcttgctcccatcttacttcataccaatgcagaagccgtgggttgagttacctctttaaacacgagggggaaagggtgttttcaactgcaataatgcatcttaaaaaagcatctaaaatcccttaaactgaggcataagaatagccaaatgtggtgggaaatgatgctttatccctcttaaaattggagcaagaaagggaagggcagctcatcgaccgcacaaacttccaaggtaaatggaacatcttccctaaatagttctgctctgccaaatgcttcagtttggggctttctttccttcctcagttttcctgactttgtcagatcaggtcccgtgaccagcagaattttatgctttgccaaaaccaaatgcatttgtgggatgtcgatttttggctgccactttcaaaggactccaatgaaattaaaaccaccaaagcacatttactgtctccaagaagatcctttgaacaccccagctttcacttcggtagcactgggtgcctgtcacccaaaccagggacatcagaacaaagctttcgtttttgtcctccccttctccaaaaagccataagccccttttttgtcaccagggcagatgcagcctttccatgggaaaagctgctcatctgcctccatctgatgcagccacatcacatttcttatgttgagattattaacagaaaaaaaaaaaaaaatccatataccattgcctcacatctatataagcccaccaaaacatttaacgccaatttttcttttaaatttttatttccctatggccaaaattaagtaaaacttccataacgagagtaagcttacgcataatgcagaaactgatttggaagtacaaaaagcaagaattcaggctcccagcttgtacaacttctgtaaagaattatctgtcaaaacagaccctttcctgcaaattgttttaatgcctctgagaatttggaaaaaaaaataggaaaaaaaaaaatatatatataaagaggaactccccaaccaactcaaggctatatatagtatatagtatatacagtggaaagattgagggggatggtactgtgtcattcctcttcacattttaaaagcctgaaaacgttattgagtgaaaaggacagatgcaaacctcccccgactgctgatggtgaaggtgaggtctgctcgttccctgtcctttccgagctatttgggaaagtgaatctgttgatggagtctcagaaacagaacagaaagaggattccctccccttgctgtccctgaagagatctgatccacttcctttccttggtgaaccagccatggcttcagcccttgcttattgaatttgtaagggttttagctacggtccatgcagcataatggcccatgagaaaacaagtcatgatattcagggtaagagtttgcagcaaaatttctcctgctctgcaagagaagtctgatatgtattaataaaatgaaagaggcattcaaatggtgcagtagaaataccagtaatgatgctgggaggaagaaaaaaatctgcttttttttttccttttatacattatttttcttttcacatcagacaagtggaaatatcctttatgttttaccctttatcctttgttcccatatgggaacaatgggcaacgcaagtttttcctccacttcccccgtcaaaaatcatcatttaatgtgcaggtaatacaaaaatgctcccaaacataaaaataagcctcaacaaatggaccactccctgcacctcttttctcactgaggcatttcgtaacaaggaattctagcagctccagatctctgttcccattgcagccagccaagggcagatggacacagagggaactggatctgtttttgtcccatgtgccacgcatggttatttccattagcatgacaacttacagcaacttcagggcacttctgaagagttcacacgaaaaggattaaacaaacctctgcagagaagaaacgtgaattcaaatctaccatattctattagtttaattacagtagctacgaaacataactcaattaggcttaaaaaaattcaattacagaaatttcctgctggtttttacaagctgtgttgatttttctatccctccttccttaatcctccatgtaccccttgctgattttttacgatctgtcccagagcaatgcaatacacctcctgtgtttactgttgagcgaaaaaaagctatttctctaagtagatctgctttcaatccaaacttgtgatagtaggataggaagagattgttgcaatgaggaaaaaaagaatatccagcaaagcgcaaacgaacaaacaaaatctgtgtgtggattctcaccatgtcccaaatcattaaacatcctttgctttccagacctctcagatgcactgtttcatccccagctatgacgacagtgatggtcacgttgtcccctggtttctagagctgcctgaggaagggatatacaagccaagctgccagtgtcacctcttccataaatggatgcctctctttgatgagggctctgattaatgccaacactgattgtgccactgggacctgtgagttcagatatgtcccaggtcatgaaatctttctcgtttcagaagaacctaccaaggagctgcagatgctttttccctggaggtgttgaaggccaggttggatgggactcagggcagtctcatctggtgcctgctttagtggttggcattcctgttcagggcaaaggggtggatttagatgatctttgaggttcctttcaacccaacccattctatgattctatgactttaaagtaagaccccaacactgctctgaactgctctgacgccacggtggagcaattgtactgatttcaaacaaaatttagccccagcattaatttgtaaagaataaaaaatctgtcatataggaacagaatcatataatttatttttatttttggagcagtctgggccccaggctaaaagccttctgcaaaagctgagaaagacacaaacaaaacccatagtgcatctgctgccctacagatggccaaagcctttttaaactattctagttattgagcaggtctatctcatgctggagaaatttaggtgtgtctgtgcaaaagaaaacgacttcttggtttcttttctcatgccaggaggcaatcaatctttttccagcttctgacccaaggtatacagttagctccaatgtgtaaatgtgtttgtgtgtcaaacctatcttgcaaaggaacaaaggcttctaaaggaaaacaaaaaggaaaacaaagtaaaatactgtacagattgctgtaaaattgagctgtagtgtaagaatttgtgctttagaattcactatcgaggaactcaaacttgtatcatatttatttattctgataggtaaaagaagaagaagaaaaaaaaagagtttatattcatttcagaaaagctgcagcatgatgctatgtaccaattgtgccagtcctgctttctgtaaaattattgcctgttttcatacaccactaataaaaagggg

//