2024-07-06 08:26:37, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_001396480 3461 bp mRNA linear VRT 17-FEB-2024 DEFINITION Gallus gallus argonaute 4, RISC catalytic component (AGO4), transcript variant 1, mRNA. ACCESSION NM_001396480 VERSION NM_001396480.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 3461) AUTHORS Burge,S., Kelly,E., Lonsdale,D., Mutowo-Muellenet,P., McAnulla,C., Mitchell,A., Sangrador-Vegas,A., Yong,S.Y., Mulder,N. and Hunter,S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3461) AUTHORS Caldwell,R.B., Kierzek,A.M., Arakawa,H., Bezzubov,Y., Zaim,J., Fiedler,P., Kutter,S., Blagodatski,A., Kostovska,D., Koter,M., Plachy,J., Carninci,P., Hayashizaki,Y. and Buerstedde,J.M. TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis JOURNAL Genome Biol 6 (1), R6 (2005) PUBMED 15642098 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000339.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: SRR13267659.92860.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA103992290, SAMEA103992323 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-52 JAENSK010000339.1 4254019-4254070 c 53-218 JAENSK010000339.1 4250705-4250870 c 219-339 JAENSK010000339.1 4250117-4250237 c 340-521 JAENSK010000339.1 4249749-4249930 c 522-658 JAENSK010000339.1 4249238-4249374 c 659-793 JAENSK010000339.1 4249020-4249154 c 794-881 JAENSK010000339.1 4248755-4248842 c 882-1029 JAENSK010000339.1 4248226-4248373 c 1030-1149 JAENSK010000339.1 4248028-4248147 c 1150-1278 JAENSK010000339.1 4247677-4247805 c 1279-1412 JAENSK010000339.1 4247384-4247517 c 1413-1597 JAENSK010000339.1 4246792-4246976 c 1598-1757 JAENSK010000339.1 4246005-4246164 c 1758-2073 JAENSK010000339.1 4245244-4245559 c 2074-2208 JAENSK010000339.1 4244916-4245050 c 2209-2310 JAENSK010000339.1 4244014-4244115 c 2311-2510 JAENSK010000339.1 4243583-4243782 c 2511-3461 JAENSK010000339.1 4242534-4243484 c FEATURES Location/Qualifiers source 1..3461 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="23" /map="23" gene 1..3461 /gene="AGO4" /gene_synonym="EIF2C4" /note="argonaute 4, RISC catalytic component" /db_xref="CGNC:66346" /db_xref="GeneID:419629" exon 1..52 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" CDS 34..2619 /gene="AGO4" /gene_synonym="EIF2C4" /note="isoform 1 is encoded by transcript variant 1; protein argonaute-4; argonaute RISC catalytic component 4; eukaryotic translation initiation factor 2C, 4" /codon_start=1 /product="protein argonaute-4 isoform 1" /protein_id="NP_001383409.1" /db_xref="CGNC:66346" /db_xref="GeneID:419629" /translation="
MEALGPGPPASLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSIQWVSVVSLQLLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 109..498 /gene="AGO4" /gene_synonym="EIF2C4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 529..681 /gene="AGO4" /gene_synonym="EIF2C4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 682..1044 /gene="AGO4" /gene_synonym="EIF2C4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(838..840,883..885,925..927,937..939,991..993, 1012..1014,1018..1020) /gene="AGO4" /gene_synonym="EIF2C4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1183..2490 /gene="AGO4" /gene_synonym="EIF2C4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1594..1596,1606..1608,1642..1653,1660..1662, 1684..1686,1693..1695,1705..1707,1717..1719) /gene="AGO4" /gene_synonym="EIF2C4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1798..1800,1804..1806,2044..2046,2458..2460) /gene="AGO4" /gene_synonym="EIF2C4" /note="active site" /db_xref="CDD:240015" exon 53..218 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 219..339 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 340..521 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 522..658 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 659..793 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 794..881 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 882..1029 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1030..1149 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1150..1278 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1279..1412 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1413..1597 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1598..1757 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1758..2073 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 2074..2208 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 2209..2310 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 2311..2510 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 2511..3461 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" ORIGIN
gggggggaccgcagcgaggccgccgccgccgccatggaagcgctgggacccgggcccccagcaagccttttccagcccccccgtcgcccaggcctgggaactgttgggaaacccatccgcctcctagccaaccactttcaggttcagatccccaagattgatgtttatcactatgatgtggatatcaaaccagaaaaacgaccccgaagagtgaacagagaagtggtggatactatggtgagacacttcaagatgcagatatttggtgaccggcagcctggatacgatgggaagcggaacatgtacactgcacacccattacccattggcagggacagagtggatatggaggtgacacttccaggagaggggaaggaccagactttcaaagtgtccattcagtgggtgtcagttgtcagccttcagttgctgttggaagctctggcagggcatttgaatgaagttcctgaagattctgtacaagcacttgatgtaattacacggcaccttccgtccatgaggtatactcctgtgggtcgctcctttttttccccccctgaaggctattaccaccctctgggtggtggcagggaggtctggtttggtttccaccagtctgtcaggcctgccatgtggaacatgatgctcaacattgatgtatcagcaactgctttctatcgtgctcagcctatcattgagttcatgtgtgaggtcttggacattcagaacatcaatgaacaaaccaagcctctgacagactcccaacgtgtcaagtttaccaaagaaatcagaggtctaaaagtagaggttactcactgtggccagatgaagagaaagtatcgagtttgcaatgttactcgtcgaccagccagccatcagacgtttcctctgcagttggaaaatgggcaggctatggagtgtacagtagctcagtattttaagcagaagtacagtctgcagctaaaatatcctcatcttccctgtctccaagtaggacaggagcagaaacacacatacttaccgcttgaggtgtgtaacatagtggcaggccagaggtgtatcaagaagttaacagacaatcagacatcaactatgataaaagcgactgcaagatctgcacccgaccgacaggaagaaatcagcagacttgtgaaaagtaacagtatggttggtggacctgatccatatctgaaggagtttggtattgttgtccataatgaaatgacagagttgacaggcagagttttgccagcgccaatgctgcaatatggaggcaggaacaagactgtggccacaccaaaccaaggtgtgtgggacatgagagggaaacagttctatgctggcattgagattaaagtttgggctgttgcctgttttgctcctcaaaaacaatgcagggaagacttactaaagagttttacagaccagctgcgcaagatctccaaggacgcagggatgccgatccaaggccagccctgtttctgtaaatacgcccagggtgcagacagtgtggagcccatgttcaaacatttaaaactgacttatgttggtctgcagctgattgtggtgattctacctggaaagacacccgtgtatgctgaagtaaagcgagttggcgacactcttcttggcatggccactcagtgtgttcaggtaaagaatgtggtgaaaacctcaccacaaacactgtccaacctgtgtctgaaaataaatgcaaagcttggaggaatcaacaacgtgctcgtacctcatcaaaggccctcggtgttccagcagccagtgatctttttgggagcagatgtcactcaccctcctgctggggatggaaagaagccttccatagctgctgtggtcggcagcatggatggccatcctagccgttactgtgccacagtgcgagtgcagacctcccgtcaggagacctcccaggaactgctgtacagccaggaggtgatacaggacctgacaaacatggtgcgagaactgctgatacagttttacaaatccacacgtttcaagcctacaagaatcatttactacagaggaggagtatcagaagggcagatgaagcaggtagcttggccagaacttatagcaatcagaaaggcctgtattagtttggaagaagactacagaccaggaataacctacatcgttgtgcagaaaagacaccacaccaggctgttctgtgccgacaaaactgaaagggtgggtaagagtggcaacgtaccagcgggcactactgtggacagcacgatcacgcacccttctgaatttgacttttacctctgtagccacgcaggaattcagggaaccagccggccctcccactatcaggtcctgtgggatgacaactgtttcactgcagatgagctacagctgctgacctatcagctgtgtcacacgtatgtgcgctgtacgcgatcagtctctattccagcacctgcatactatgccagactggtagcatttagggctagataccatcttgtggacaaggatcacgacagtgctgaaggcagccacgtgtcaggacagagcaatggccgtgatcctcaggctctggcaaaggcagtgcagatccaccatgatactcaacatacaatgtattttgcttgagagcatctgggaagatgaggcaaagccaacaactcgttcagtcctgacatgttttcaatgcctactgctatagctagggcccggtttctttcagactgcccactaccagcagctctgaacagtcgcactgaatctgtacttcaaacaatgtctgatgcaccgacacaattgagccattcgtttcgttattttacgtcatagaaattcatagactgtcttttctgatgcattggactaaatttttacctcaaagcgcaaaaggccgatcatcccgacgtttttaaaggacttggcacgaaaggtttctattgaatactttgctagctctggtctttaggttcccttctcatcccattagctgatggtgacgactgattctccgtcctcacgcgctgcttagtgagtatgcgtagtatggcgaagttctcctccagttcaatgtaatcgttctcttgtgtggggccatagatttttttaatggagattttagacttcactactgtaaatgccttttaacagacgtaactttcacaggtcttgcagtttttgtcggttttactaatgacctttttaacctgcagactcgggctgcaaagcaattgcactattctgcgagttcagatcggtggttcctgttgtgaatgtgtgacgtgcccaggtggtggtgcctggcagtagctttcaattgtaacgcctacagataatgctgccatggcgtcgtgacaaacactgaaccatcgttttcccccctctaaaaaaacaaaacaaaaaaaaaaacgaaaaaaaaaaaaacaaaaaaaggatttaaaaaaaaaatagaaaaaaaaatacaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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