2024-09-29 09:43:56, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001396348 1386 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus proteasome 26S subunit, non-ATPase 9 (PSMD9), transcript variant 2, mRNA. ACCESSION NM_001396348 VERSION NM_001396348.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 1386) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 1386) AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C, Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1386) AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P, Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci P, Hayashizaki Y and Buerstedde JM. TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis JOURNAL Genome Biol 6 (1), R6 (2005) PUBMED 15642098 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000260.1. ##Evidence-Data-START## Transcript exon combination :: SRR12888546.343856.1, SRR12888493.143254.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-138 JAENSK010000260.1 5708048-5708185 139-241 JAENSK010000260.1 5708260-5708362 242-429 JAENSK010000260.1 5708542-5708729 430-522 JAENSK010000260.1 5709315-5709407 523-611 JAENSK010000260.1 5709559-5709647 612-1386 JAENSK010000260.1 5709979-5710753 FEATURES Location/Qualifiers source 1..1386 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="15" /map="15" gene 1..1386 /gene="PSMD9" /note="proteasome 26S subunit, non-ATPase 9" /db_xref="CGNC:3203" /db_xref="GeneID:416853" exon 1..138 /gene="PSMD9" /inference="alignment:Splign:2.1.0" CDS 25..639 /gene="PSMD9" /note="isoform 2 is encoded by transcript variant 2; 26S proteasome non-ATPase regulatory subunit 9; proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" /codon_start=1 /product="26S proteasome non-ATPase regulatory subunit 9 isoform 2" /protein_id="NP_001383277.1" /db_xref="CGNC:3203" /db_xref="GeneID:416853" /translation="
MSEDGSGRAMTLGEVQQLVRRKDELEAQIRACYQLLEDQKGVGMDGPLVDAEGFPRADIDLYQVRAARHSIACLQNDHKALMKQVEEALHQLHAREKEKHARDEAEARAEAMSQSLPPAFAKVNAVTPESPASTSVDDEIVEFGSVNVHNFKSLQNIATVVQHSEGRPLSVTVIRNGKKVHLGLTPKRWAGKGLLGCNIIPLQR"
misc_feature 67..306 /gene="PSMD9" /note="Nas2 N_terminal domain; Region: Nas2_N; pfam18265" /db_xref="CDD:465689" misc_feature <376..>612 /gene="PSMD9" /note="Membrane-associated protease RseP, regulator of RpoE activity [Posttranslational modification, protein turnover, chaperones, Transcription]; Region: RseP; COG0750" /db_xref="CDD:440513" exon 139..241 /gene="PSMD9" /inference="alignment:Splign:2.1.0" exon 242..429 /gene="PSMD9" /inference="alignment:Splign:2.1.0" exon 430..522 /gene="PSMD9" /inference="alignment:Splign:2.1.0" exon 523..611 /gene="PSMD9" /inference="alignment:Splign:2.1.0" exon 612..1386 /gene="PSMD9" /inference="alignment:Splign:2.1.0" ORIGIN
gcggcacggcgcggtgccgccgccatgtcggaggacgggtcgggccgcgccatgacgctgggcgaggtgcagcagctggtgcggcgtaaggacgagctggaggcgcagatccgggcctgctaccagctcctggaggaccaaaagggcgtgggtatggacgggccgctggtggacgccgagggcttcccccgggccgacatcgatctgtaccaagtgcgcgccgcgcggcacagcatcgcctgtctgcagaacgaccacaaggctctgatgaagcaggtggaggaggctcttcaccagctgcacgcccgggagaaggagaagcacgccagggatgaggcagaggcacgggctgaggccatgagccagagcctgccacctgcctttgccaaagtcaatgctgtgacgccggagtctcctgccagcacctcggttgatgatgagattgtggagtttggttccgtcaatgtgcacaacttcaagagcctgcagaacattgccacagtagtacagcacagtgaaggaagacctctgagtgtgactgtgatccgcaacggcaagaaagtgcacctggggctgactccaaagcgctgggctgggaagggcctcctgggctgcaatatcattcccttgcaaagatgaccacagctcagaagacaataaaaatgaagcttgtgcctgctttctggactctgatttggtttgaaagcttgccctaagatctttgtttttgctgaaatgagtgtttcggaggctgtgacctctaggtggctgggcttgcagagtctgaagaggttctgttggagcagggccttaatgcagatggaattgcactggtttgtggggagcaactcacagagttgcaggatgtggcttctcatctcttgtgccttgcatcagtttggagtaaggctggagtgtaactcagatttcacttgagacagatttggaggagcatagaatgcttttatgtggtgataacgtggcattccttcttttttgttgtttctctgtgaaattcctcactgaacatcttgtaaaataggataaaaagacctggaacaattttttcttttttttaaattagtagatcacagtcaaggaacgtgcaaatctggcactttgtccttcccatgtgagcacagctgttggaagtcactaaataagatagcatttttggaatgcctaattattttaagttaatgaaatcagcattggggttataactctgtcttttaatgtattgaagtactcttaaattttttatttgctgcagttgattttggggtgtatgaacacttcagggggggttggggtgatcttgtttgtaaggttgtttccagttgaactttgaaattctcatcccaatgaataaaactgagtgatgtc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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