2024-07-06 08:02:40, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_001389549 12501 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus argonaute 2, RISC catalytic component (AGO2), mRNA. ACCESSION NM_001389549 VERSION NM_001389549.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 12501) AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C, Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000044.1. On Dec 1, 2021 this sequence version replaced NM_001389549.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: SRR13267659.218747.1, SRR13267656.6950.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA103992290, SAMEA103992323 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-135 JAENSK010000044.1 24432055-24432189 c 136-331 JAENSK010000044.1 24414758-24414953 c 332-452 JAENSK010000044.1 24410420-24410540 c 453-634 JAENSK010000044.1 24405165-24405346 c 635-771 JAENSK010000044.1 24403730-24403866 c 772-906 JAENSK010000044.1 24403459-24403593 c 907-994 JAENSK010000044.1 24400543-24400630 c 995-1142 JAENSK010000044.1 24399334-24399481 c 1143-1262 JAENSK010000044.1 24399033-24399152 c 1263-1385 JAENSK010000044.1 24398723-24398845 c 1386-1519 JAENSK010000044.1 24397408-24397541 c 1520-1704 JAENSK010000044.1 24396368-24396552 c 1705-1864 JAENSK010000044.1 24394609-24394768 c 1865-1955 JAENSK010000044.1 24392780-24392870 c 1956-2150 JAENSK010000044.1 24391920-24392114 c 2151-2285 JAENSK010000044.1 24391248-24391382 c 2286-2387 JAENSK010000044.1 24389531-24389632 c 2388-2587 JAENSK010000044.1 24389026-24389225 c 2588-12501 JAENSK010000044.1 24378772-24388685 c FEATURES Location/Qualifiers source 1..12501 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="2" /map="2" gene 1..12501 /gene="AGO2" /note="argonaute 2, RISC catalytic component" /db_xref="CGNC:64972" /db_xref="GeneID:100858102" exon 1..135 /gene="AGO2" /inference="alignment:Splign:2.1.0" CDS 105..2696 /gene="AGO2" /EC_number="3.1.26.n2" /note="argonaute RISC catalytic component 2" /codon_start=1 /product="protein argonaute-2" /protein_id="NP_001376478.1" /db_xref="CGNC:64972" /db_xref="GeneID:100858102" /translation="
MYPGASTAGPVLAPPPPLPPPVQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVAIKWMSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQENGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKTFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYTGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 390..614 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 642..794 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 795..1157 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(951..953,996..998,1038..1040,1050..1052,1104..1106, 1125..1127,1131..1133) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1290..2567 /gene="AGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1701..1703,1713..1715,1749..1760,1767..1769, 1791..1793,1800..1802,1812..1814,1824..1826) /gene="AGO2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1905..1907,1911..1913,2121..2123,2535..2537) /gene="AGO2" /note="active site" /db_xref="CDD:240015" exon 136..331 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 332..452 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 453..634 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 635..771 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 772..906 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 907..994 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 995..1142 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 1143..1262 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 1263..1385 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 1386..1519 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 1520..1704 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 1705..1864 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 1865..1955 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 1956..2150 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 2151..2285 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 2286..2387 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 2388..2587 /gene="AGO2" /inference="alignment:Splign:2.1.0" exon 2588..12501 /gene="AGO2" /inference="alignment:Splign:2.1.0" ORIGIN
gctcgggcttctctccctcccttccctccctttccctccccttcggccgccgccgcggtagggacctggagcgaggcgccgcctccgccgccgcacacggagccatgtacccgggagccagcaccgccggacccgtgcttgcacctcctccaccgttgccaccaccagtacagggatatgccttcaaacctcctcctcgcccagattttgggacttctgggagaacaatcaaactgcaggccaacttctttgaaatggacattcctaaaatagatatctaccattacgagttggatataaagccagaaaaatgtcctagaagagttaatagagaaatagtggagcatatggttcagcactttaaaacacagatttttggggatcgcaagccagtgtttgatggaagaaaaaacctttatacagctatgccacttcccattggaagagataaagtggagttggaggtcacgttgccaggagaagggaaggacagaatatttaaggtggctataaagtggatgtcctgtgtgagtttgcaggcgttacatgatgctctttctggccggctgccgagcgtcccatttgaaaccatccaggcactggatgtagtgatgaggcacttgccttccatgagatatactccagtggggcgatctttttttacagcatcagaagggtgctcaaatccattaggtggtggcagagaggtttggtttggattccatcaatcagtcagaccttccttatggaaaatgatgttaaacattgatgtatcggcaactgcattttacaaagcacagccagttattgagtttgtatgtgaagttttggatttcaaaagcattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaataaaaggtctaaaggtggagataacacactgtggacaaatgaaaagaaagtacagagtgtgcaacgtcaccagacgaccagcaagtcaccaaacattcccacttcagcaggagaatggacaaacagttgaatgcactgtagctcagtattttaaggacaggcacaaattagttttacgctatcctcaccttccatgtttacaagttgggcaggagcagaagcacacgtaccttcctcttgaggtgtgcaacatagtggcaggacaaagatgcataaaaaaactcactgacaatcagacttccactatgattcgagcaacagccagatcagcacctgaccgtcaggaagagattagcaaattgatgcggagtgcgagttttaacactgacccttatgttcgtgaatttgggataatggtgaaggatgaaatgacagatgtgactggtagagtcctacagcctccctcaatcctctatggaggcaggaataaagcaattgctacaccagttcaaggagtttgggacatgaggaataaacagtttcacactggaattgaaataaaggtttgggcaattgcatgctttgctccccagcgccaatgcactgaagtgcatcttaagaccttcacagagcaactgaggaagatttccagagatgcaggaatgccaatccaagggcagccatgcttctgtaaatatgcccagggagctgacagcgtggagcccatgttcaggcatctcaagaacacttacaccggactgcagctcgttgtagtaattttaccaggaaaaacaccagtctatgcggaggtgaagcgtgttggtgacacagtgctgggaatggctacgcagtgtgttcagatgaagaatgtgcagaggacaacacctcagactctgtctaacctctgcttaaaaataaacgtcaaattaggaggtgtaaataatattttactgccacagggaagaccaccagtattccaacagcctgtcatattccttggtgcagatgtaacccatcctccagctggagatggaaaaaagccctccattgctgcagttgtaggaagtatggatgctcatcccaatcgctactgtgccactgttcgggtccagcagcaccgccaagaaatcatccaagatttggctgccatggtcagagagctgctgattcagttctacaaatcaaccagatttaaaccaactcgtatcattttctacagagatggagtttccgaggggcagtttcagcaggttctccatcatgaattgctggctatcagagaagcatgtattaaactagagaaggattaccagcctggaattacatttatagttgtgcagaaaaggcatcacaccagactcttctgtacagataaaaatgagcgggttggaaaaagtgggaacattccagctggtaccacagtggacacaaaaatcacccatccatcagagtttgacttctacctgtgtagtcacgctggtattcagggaacaagcagaccttcgcattaccacgtcctctgggatgacaatcgtttctcttcagatgagctgcagattcttacctaccagctgtgtcatacatacgtacgctgcactcgttctgtttccatccctgcaccagcatattacgcgcacctggttgccttcagagccaggtatcatctggtggataaagaacacgacagtgctgaaggcagccacacttcgggtcagagtaatggcagagatcatcaagcacttgcaaaagcagttcaggttcaccaggacacgttgcgcactatgtactttgcttgacatgttttaatgtttagcgactcagtacagtaccgagttggattcacatgagaccagctgcacttagaccaacagttgcccaagctccagtgacagtcagcaatgagtgatgtatcttcatttttttttcccccctttttttgcaagaaagccttccgtccagaatttcagacttggttatgaactgcattcttctacaaagccccacgattgttggaaatgtggtttgccaaaatctctaagctgcctgttataaaacagacccatattttataattaaatcaagagctgtgatctcagggcttaggggaaaaaacaaaacacaaaactctccattgtttgctattcgtttaattgcttttaataatttggagagatctaattcattctaaagttaatgggctaaaatgctgcgaattagcttttaatacaaaggaaagcaaagcgtttttttgactatttatgaagccttgatttcattctggatgtatttccaatagttttcttctcaaaagaaaattgtgacaaaattctgctttccaactgtcttacaaagatttttctctccgtgtctaagggcaaatgtattttctgaagcttgttcttgaatgttttttatcgtgctgcatttaaaaatgtttttcatagacaaaaagaagaattttaaagcagaacgaacgaacttgtacctgaacttttagtaggtgcagtcagattggcaaaagagaaggtgccatttttaagaaaagaaaaagaatttaaagattttttttttttttttaatcatactgacagctaactttagaatttgtcatacaggactgtgacactctccaaagtctctaaggaatacgggtctgtggtgataaatacagtacaatcctctttcactgttatgtttgaattaatgtaaattttatatgtgtttcacagtattaatgtgatagactagatgctattatttatttttatttactaaggagtgctcattatacttctgttaacatatcaagaatgctttggatttagaaattaaaaccttatcgtgaggacgttactattcaaaagcaaaaatatgcaattgactttgatgcgggagttcagagctgcgtgcagaggacattgtgtagcccgtcctttggagaaaggcttttcgaagcgtacacacaacgtagcaggctttacctgtgcagtcaaagacgcacacgagaccaacgttctgcatccattcaagcacaagcaattgtatttaatttatgtgttggcggtcggtgaagctggagctctaagagagggaagtggtttgatgtttgtcgcgtggacagaagtcagagaatctatgcagtaaaggtaaatcttaggaaactgaagtttacttaggaagggaggtgaaaccttcattatgcgtgagagtttggccgttctcttaggagaagcattaattaactgataattattagacagacacttctgttagtttgcacactgggttcataaaaaaccgtagtacatatgaaaaccattgcactaatgatgatgccacaagcaggtgtagaagaaaaagaaaaaagcccaggaaatgtgtttatgctgactttgtttttgtttattttcataggaaaacttaaaatctgccctctcagtgtgtatgtaaggatgtcgttcttttccattttgctttgtcttttcccttttctcttagcagatgctcagtcactgttgtgcgtccatatacctctagctgctgagctgggccaggagctgtaaccaaggcagaggtctgtgccacgcagcagggagcctgtagctggctgcttagtaagctaggaagtgcccagcctttgctgcatgaagagttctaggtacgtaactcagtgcagattccaagcatcagcttgtagcagcgtgttggtgttgtttaggtgaaacaacgatgtcaatcctattagcagatgaagtgtgtttgtgttgttgtcatttgttggttagcctgccaggtcagacctttgtctcatgattgaatctagcttttcagtgatagacagtataacagaaagcaaactccgcgtcacgttgtctgtcttcccattttccagcagccaggctgtacgtacctctctcacatgtaccgctcacctgcaaaagcttttccacagttgacatgttgcacttctgtgtgtttgcttaatgcgtttcggatttcagattttaattcggcagagttttatatatgaatttatttttatatgaattactcttgacaaatacaaggaagatcaagcattttaaaactccagttatgtt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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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