2024-09-29 09:29:55, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001305422 2958 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus required for meiotic nuclear division 5 homolog A (RMND5A), mRNA. ACCESSION NM_001305422 VERSION NM_001305422.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 2958) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 2958) AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C, Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2958) AUTHORS Savolainen P, Fitzsimmons C, Arvestad L, Andersson L and Lundeberg J. TITLE ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels JOURNAL Cytogenet Genome Res 111 (1), 79-87 (2005) PUBMED 16093725 REFERENCE 4 (bases 1 to 2958) AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P, Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci P, Hayashizaki Y and Buerstedde JM. TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis JOURNAL Genome Biol 6 (1), R6 (2005) PUBMED 15642098 REFERENCE 5 (bases 1 to 2958) AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ. TITLE A comprehensive collection of chicken cDNAs JOURNAL Curr Biol 12 (22), 1965-1969 (2002) PUBMED 12445392 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000074.1. On Sep 23, 2021 this sequence version replaced NM_001305422.1. ##Evidence-Data-START## Transcript exon combination :: CR385784.1, HAEK01029318.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-297 JAENSK010000074.1 38177155-38177451 298-440 JAENSK010000074.1 38181765-38181907 441-575 JAENSK010000074.1 38187772-38187906 576-676 JAENSK010000074.1 38188086-38188186 677-843 JAENSK010000074.1 38191373-38191539 844-1009 JAENSK010000074.1 38191845-38192010 1010-1112 JAENSK010000074.1 38194302-38194404 1113-1267 JAENSK010000074.1 38195871-38196025 1268-2958 JAENSK010000074.1 38197422-38199112 FEATURES Location/Qualifiers source 1..2958 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="4" /map="4" gene 1..2958 /gene="RMND5A" /note="required for meiotic nuclear division 5 homolog A" /db_xref="CGNC:51855" /db_xref="GeneID:422920" exon 1..297 /gene="RMND5A" /inference="alignment:Splign:2.1.0" CDS 156..1331 /gene="RMND5A" /EC_number="2.3.2.27" /codon_start=1 /product="E3 ubiquitin-protein transferase RMND5A" /protein_id="NP_001292351.1" /db_xref="CGNC:51855" /db_xref="GeneID:422920" /translation="
MDQCVTVERELEKVLQKFSGYGQLCERSLEELIQYAGGLRREILQTENQDGDLSGTISLVMTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRILNEVMVEHFFRQGMLDVAEELCQESGLSIDQSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTANQREALQYAKNFQPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALINIKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISRDALNKMFNGSKLKCPYCPMEQSPGDAKQIFF"
misc_feature 333..1328 /gene="RMND5A" /note="Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]; Region: COG5109" /db_xref="CDD:227440" exon 298..440 /gene="RMND5A" /inference="alignment:Splign:2.1.0" exon 441..575 /gene="RMND5A" /inference="alignment:Splign:2.1.0" exon 576..676 /gene="RMND5A" /inference="alignment:Splign:2.1.0" exon 677..843 /gene="RMND5A" /inference="alignment:Splign:2.1.0" exon 844..1009 /gene="RMND5A" /inference="alignment:Splign:2.1.0" exon 1010..1112 /gene="RMND5A" /inference="alignment:Splign:2.1.0" exon 1113..1267 /gene="RMND5A" /inference="alignment:Splign:2.1.0" exon 1268..2958 /gene="RMND5A" /inference="alignment:Splign:2.1.0" ORIGIN
ggtccccgcctgtcctcggcgctgcctgcgcacagctgggggagaccgggaagttggacgccgggccggggctggcggagggcggccgggacaggccgcggagcccgggggtggggggagacgaagaagaagaaggcggcccggtgccggccgctatggaccagtgcgtgacggtggagcgggagctggagaaggtgctgcagaagttctcgggctacgggcagctctgcgagcggagcctggaggagctcatccagtacgcgggagggctgcggcgggagatcctccagaccgagaatcaagatggagacctgtcagggacaatttcacttgttatgacgcagtgttgtaaaagaataaaggacacagttcaaaaactggcctcagatcacaaagacattcacagcagtgtatcccgagttggaaaagccattgataagaattttgactctgacatcagcagcgtggggatagatgggtgctggcaggctgacagccagcggatcctcaacgaggtgatggtagagcacttcttccggcaaggcatgttggatgtggccgaggaactgtgtcaggaatctggtctatcaatagatcagagtcagaaagaaccatttgtggaattaaatcgaatattggaagcattaaaagttagagttctgagacctgcattagagtgggcggtatccaacagagaaatgcttatggcacagaatagttcactggagttcaaactacacagattatatttcattagtttattgatgggtggaacagcaaatcaaagagaagcgcttcagtatgcaaaaaacttccagccgtttgccctaaaccatcagaaagatattcaggttttgatgggcagcctggtgtatctgaggcaaggtatagagaactcgccgtacgttcatctattagatgcaaatcagtgggcggacatctgtgacatcttcacaagagatgcctgtgctcttctgggtctctcagttgaatcaccgctcagtgttagtttttcagcaggttgtgtagcattaccagctctaattaatatcaaggcagttattgaacaaaggcagtgcacaggtgtttggaaccagaaggatgaactaccgattgaagtggaccttggtaaaaagtgctggtaccattcaatatttgcctgtcccattctccgtcagcaaacaacagataataatccacctatgaaattagtctgtggtcatattatatcaagagatgctttgaataaaatgtttaatggcagcaaattaaaatgcccctattgtccgatggaacagagtcctggagatgccaaacagatatttttctgaagaaaagcttcattatgcggtctgtaagtgacactctgcaattcaggtgcatttcaggagaattaaaacacacctgttccattttatgcagcagactgaggactccaatgtttgtataagctaatgctacagaaactttgccaacatttagtatatacataccaagtggaaatgctacagaaatattattaccatagggctttactatactcttggtctccatacctgatcaagttactacaccagcagttgtcattcaatgcaggtttttgtactcaattatatggtgactttttactttttaaaagcagaaatggatcacccccatttgtttaatattcctcctgctatcatctatcggtaactgtcaccttagagaatgtttgtgcaagaggttttatttcctgtaatgtgtacataattaaaggtaaatacttcaggaaaaaaaaaaagtttgataaattgaatagtggttataaaactaatttgtattttttttgctgaaagagctgtgatatattctgagtttttctttcaaacattttttcaacttttacatagaattcaaagtaaatgtgcatatatataaaatatataaatatatagccctaaggggctacctgttaaaatccatcactaatttataagggtgatgtgtggatagattactgctggaacagagggaataggaaatcctgttccctaggtttcaaatgtttgtgtaaaagaatactcaataaaaggaaattctgaagtggaaatgcttttagttgatgacgtttgctctctggccttcgtagtcatgttctttggactttgtattcgggattaggctataaatgtcatgttgctgtatagtttaatagtcattatagtgtgctatttataaacagttatcaaaaccaaataaattgtataagtattcattgttaaatgggggaaaagcatgttctgatgcagtcttctggtcacgacgctgcacttggcagaattgggccctacgtcacgtattaggaggtagcaaattttctgtagcttgagaacactttgcttctagccttgtttttgtagtagactattactgccattgccactttttctgctcaatttgtcatattgttgactaggtaaatttgtactcatgaacaaggtgtagatcatggcagttcaatctttttctagtgtgcagatatttgtatttattgcactgtcctatagtagggcaagcagccataaggcatgcgaagctacgtgtaaaatcctatttctgtattgtggagtaaaaaacctgagcttacatggttgaatactgacacactggttgaatgcactagcacaatgcactacaaagaagaccgtctgtgagacatctccaccttttgaatctgtgtgccacctgacttgagagactgagttggactctgtcggatcagtgacaacggacatcctgaaagagacactaagagcaacaagtcaaggcacacacgttttgagcctgaaatgtgtttggcacgtgtgaacaatgcaggtgtgtgactttctgcaaaacttctattgtattcacactgagttccaaccaaccaggttaccgagtggtaaaattaacaataaacaggtgaggatatta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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