2024-06-29 21:17:48, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_001293230 1588 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus reticulocalbin 2 (RCN2), transcript variant 2, mRNA. ACCESSION NM_001293230 XM_413734 VERSION NM_001293230.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 1588) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 1588) AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C, Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1588) AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ. TITLE A comprehensive collection of chicken cDNAs JOURNAL Curr Biol 12 (22), 1965-1969 (2002) PUBMED 12445392 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000245.1. On Sep 23, 2021 this sequence version replaced NM_001293230.1. Transcript Variant: This variant (2) uses an alternate in-frame splice site in the central coding region compared to variant 1. The encoded isoform (2) is shorter than isoform 1. ##Evidence-Data-START## Transcript exon combination :: HAEK01016974.1, CO772753.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992432, SAMEA103992528 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-126 JAENSK010000245.1 2766944-2767069 c 127-232 JAENSK010000245.1 2766755-2766860 c 233-429 JAENSK010000245.1 2764799-2764995 c 430-531 JAENSK010000245.1 2762547-2762648 c 532-628 JAENSK010000245.1 2761269-2761365 c 629-771 JAENSK010000245.1 2759277-2759419 c 772-1588 JAENSK010000245.1 2755622-2756438 c FEATURES Location/Qualifiers source 1..1588 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="10" /map="10" gene 1..1588 /gene="RCN2" /note="reticulocalbin 2" /db_xref="CGNC:2050" /db_xref="GeneID:415350" exon 1..126 /gene="RCN2" /inference="alignment:Splign:2.1.0" CDS 13..924 /gene="RCN2" /note="isoform 2 precursor is encoded by transcript variant 2; reticulocalbin 2, EF-hand calcium binding domain" /codon_start=1 /product="reticulocalbin-2 isoform 2 precursor" /protein_id="NP_001280159.2" /db_xref="CGNC:2050" /db_xref="GeneID:415350" /translation="
MRRRPRLALGLALVLAALGSAYGQHRADYDREALLGGQEEAEEYARLSPEEQQRRLKAIVRRIDADNDGLLSKDELSSWIQQSFKHYVTQEAKQHFHDYDKNGDGLVSWKEYNLQMYDRVIDFDENTVLEDQEEESFRQEKKRFEKANRDDDPDLNVDEFIAFEHPEEVEYMTDFVIEEALEEHDKDGDGFVSLEEFLGDYRRDPTAKEDPEWILVEKDRFVNDYDKDNDGKLNPQELLSWIVPNNQGIAQEEALHLIEEMDLNDDKKLSEAEVLKNQDLFLNSEATDYGRQLHDERFYHEEL"
sig_peptide 13..81 /gene="RCN2" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 79..858 /gene="RCN2" /note="EF-hand, calcium binding motif, found in CREC-EF hand family; Region: EFh_CREC; cl25354" /db_xref="CDD:330175" misc_feature 79..156 /gene="RCN2" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320022" misc_feature 175..264 /gene="RCN2" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320022" misc_feature 283..372 /gene="RCN2" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320022" misc_feature 430..516 /gene="RCN2" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320022" misc_feature 538..627 /gene="RCN2" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320022" misc_feature 661..750 /gene="RCN2" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320022" misc_feature 769..858 /gene="RCN2" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320022" exon 127..232 /gene="RCN2" /inference="alignment:Splign:2.1.0" exon 233..429 /gene="RCN2" /inference="alignment:Splign:2.1.0" exon 430..531 /gene="RCN2" /inference="alignment:Splign:2.1.0" exon 532..628 /gene="RCN2" /inference="alignment:Splign:2.1.0" exon 629..771 /gene="RCN2" /inference="alignment:Splign:2.1.0" exon 772..1588 /gene="RCN2" /inference="alignment:Splign:2.1.0" ORIGIN
ctcggcggcgcgatgcggcggcggccgcggctggcgctgggcctggccctggtcctggcggcgctgggctcggcgtacgggcagcaccgcgccgattatgaccgggaggcgctgctcggagggcaggaggaggcggaggagtacgcgcggctcagcccggaagagcagcagcggcggctgaaggccatcgtgcggaggatcgacgcggacaacgacggcctcctcagcaaggatgagctgagctcctggatacagcagtcattcaaacactatgttacacaagaagctaagcagcacttccacgactatgacaaaaatggtgatggattggtgtcttggaaggagtacaacttacaaatgtacgatcgtgtaattgattttgatgagaacactgtcctggaggatcaagaagaagaatcatttcggcaggagaagaagcgttttgaaaaagctaatagggatgatgatcctgatctaaatgtggatgaatttattgcctttgaacatcccgaagaagtggagtatatgacggactttgtcattgaggaggctttagaagaacatgataaagatggtgatggatttgtgagcctggaagaattccttggtgattacagaagagacccaactgccaaggaagatccagaatggatacttgttgagaaggatcgatttgtgaatgactatgacaaggataatgatgggaaactcaaccctcaagagctgttgtcctggatagtacctaataaccagggtattgcacaagaggaggctcttcacctgattgaagagatggatctgaatgatgataaaaagctttctgaggcagaagttcttaagaaccaggatttgtttcttaacagcgaagccacggattatggcaggcagcttcacgatgaacgtttctaccacgaagaactttagattatttattttgtaatctgtttttcttcccttcctttcattgggagcctttgttaaatgcactcacttttcagctttgttgcaagttttacgctgtaattacaatagaataacgtttgtgtaaatacttggcattcaaaattaaattgccctcctgcagacttccttaggcctcttctcgccttccaaattaatcttaaatacctactccaaaattacatagcaatgggaaaggaattagttaaggtacagtactgtattgtgcagggctgtgtgactgtacttcaaataaatggataatctaaacggttgtgaaggaattcaaaacagaaaatgagactactattttttctaatcagtttaattagggaggagagcggaggagatggagggaaggtgtttagagtgagtatcaactgtgttttatttaatacgtttggagaaacacttaggttaaatgcctcaattgtttaagaggtttctacttaatgttaaatggttcctataatgtgttttactgtattacggaaagaaaaacctgctatttttacatctacagacaataattgtttttatgtacaattctacaacactggcagtacgatggtattttacattgtcaagaccttcttcatttgttggattaaaaccaaaataaattcca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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