2024-09-29 09:36:11, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001293208 1600 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus reticulocalbin 2 (RCN2), transcript variant 1, mRNA. ACCESSION NM_001293208 XM_004943713 VERSION NM_001293208.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 1600) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 1600) AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C, Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1600) AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ. TITLE A comprehensive collection of chicken cDNAs JOURNAL Curr Biol 12 (22), 1965-1969 (2002) PUBMED 12445392 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000245.1. On Sep 23, 2021 this sequence version replaced NM_001293208.1. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). ##Evidence-Data-START## Transcript exon combination :: BX935102.2, HAEK01070605.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA103992290, SAMEA103992323 [ECO:0006172] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-126 JAENSK010000245.1 2766944-2767069 c 127-232 JAENSK010000245.1 2766755-2766860 c 233-429 JAENSK010000245.1 2764799-2764995 c 430-543 JAENSK010000245.1 2762547-2762660 c 544-640 JAENSK010000245.1 2761269-2761365 c 641-783 JAENSK010000245.1 2759277-2759419 c 784-1600 JAENSK010000245.1 2755622-2756438 c FEATURES Location/Qualifiers source 1..1600 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="10" /map="10" gene 1..1600 /gene="RCN2" /note="reticulocalbin 2" /db_xref="CGNC:2050" /db_xref="GeneID:415350" exon 1..126 /gene="RCN2" /inference="alignment:Splign:2.1.0" CDS 13..936 /gene="RCN2" /note="isoform 1 precursor is encoded by transcript variant 1; reticulocalbin 2, EF-hand calcium binding domain" /codon_start=1 /product="reticulocalbin-2 isoform 1 precursor" /protein_id="NP_001280137.2" /db_xref="CGNC:2050" /db_xref="GeneID:415350" /translation="
MRRRPRLALGLALVLAALGSAYGQHRADYDREALLGGQEEAEEYARLSPEEQQRRLKAIVRRIDADNDGLLSKDELSSWIQQSFKHYVTQEAKQHFHDYDKNGDGLVSWKEYNLQMYDRVIDFDENTVLEDQEEESFRQLHLKEKKRFEKANRDDDPDLNVDEFIAFEHPEEVEYMTDFVIEEALEEHDKDGDGFVSLEEFLGDYRRDPTAKEDPEWILVEKDRFVNDYDKDNDGKLNPQELLSWIVPNNQGIAQEEALHLIEEMDLNDDKKLSEAEVLKNQDLFLNSEATDYGRQLHDERFYHEEL"
sig_peptide 13..81 /gene="RCN2" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 79..870 /gene="RCN2" /note="EF-hand, calcium binding motif, found in reticulocalbin-2 (RCN2); Region: EFh_CREC_RCN2; cd16224" /db_xref="CDD:320022" misc_feature 79..159 /gene="RCN2" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320022" misc_feature 175..264 /gene="RCN2" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320022" misc_feature 283..372 /gene="RCN2" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320022" misc_feature 439..528 /gene="RCN2" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320022" misc_feature 550..639 /gene="RCN2" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320022" misc_feature 673..762 /gene="RCN2" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320022" misc_feature 781..870 /gene="RCN2" /note="EF-hand motif [structural motif]; Region: EF-hand motif" /db_xref="CDD:320022" exon 127..232 /gene="RCN2" /inference="alignment:Splign:2.1.0" exon 233..429 /gene="RCN2" /inference="alignment:Splign:2.1.0" exon 430..543 /gene="RCN2" /inference="alignment:Splign:2.1.0" exon 544..640 /gene="RCN2" /inference="alignment:Splign:2.1.0" exon 641..783 /gene="RCN2" /inference="alignment:Splign:2.1.0" exon 784..1600 /gene="RCN2" /inference="alignment:Splign:2.1.0" ORIGIN
ctcggcggcgcgatgcggcggcggccgcggctggcgctgggcctggccctggtcctggcggcgctgggctcggcgtacgggcagcaccgcgccgattatgaccgggaggcgctgctcggagggcaggaggaggcggaggagtacgcgcggctcagcccggaagagcagcagcggcggctgaaggccatcgtgcggaggatcgacgcggacaacgacggcctcctcagcaaggatgagctgagctcctggatacagcagtcattcaaacactatgttacacaagaagctaagcagcacttccacgactatgacaaaaatggtgatggattggtgtcttggaaggagtacaacttacaaatgtacgatcgtgtaattgattttgatgagaacactgtcctggaggatcaagaagaagaatcatttcggcagcttcatttaaaggagaagaagcgttttgaaaaagctaatagggatgatgatcctgatctaaatgtggatgaatttattgcctttgaacatcccgaagaagtggagtatatgacggactttgtcattgaggaggctttagaagaacatgataaagatggtgatggatttgtgagcctggaagaattccttggtgattacagaagagacccaactgccaaggaagatccagaatggatacttgttgagaaggatcgatttgtgaatgactatgacaaggataatgatgggaaactcaaccctcaagagctgttgtcctggatagtacctaataaccagggtattgcacaagaggaggctcttcacctgattgaagagatggatctgaatgatgataaaaagctttctgaggcagaagttcttaagaaccaggatttgtttcttaacagcgaagccacggattatggcaggcagcttcacgatgaacgtttctaccacgaagaactttagattatttattttgtaatctgtttttcttcccttcctttcattgggagcctttgttaaatgcactcacttttcagctttgttgcaagttttacgctgtaattacaatagaataacgtttgtgtaaatacttggcattcaaaattaaattgccctcctgcagacttccttaggcctcttctcgccttccaaattaatcttaaatacctactccaaaattacatagcaatgggaaaggaattagttaaggtacagtactgtattgtgcagggctgtgtgactgtacttcaaataaatggataatctaaacggttgtgaaggaattcaaaacagaaaatgagactactattttttctaatcagtttaattagggaggagagcggaggagatggagggaaggtgtttagagtgagtatcaactgtgttttatttaatacgtttggagaaacacttaggttaaatgcctcaattgtttaagaggtttctacttaatgttaaatggttcctataatgtgttttactgtattacggaaagaaaaacctgctatttttacatctacagacaataattgtttttatgtacaattctacaacactggcagtacgatggtattttacattgtcaagaccttcttcatttgttggattaaaaccaaaataaattcca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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