2024-06-29 21:22:03, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_001198654 1166 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus peroxisomal biogenesis factor 10 (PEX10), mRNA. ACCESSION NM_001198654 XM_417558 VERSION NM_001198654.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 1166) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000329.1. On Sep 23, 2021 this sequence version replaced NM_001198654.1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data because no single transcript from the same strain was available for the full length of the gene. The extent of this transcript is supported by transcript alignments. ##Evidence-Data-START## Transcript exon combination :: HAEL01000774.1, BX933966.2 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-127 JAENSK010000329.1 1544921-1545047 128-208 JAENSK010000329.1 1545269-1545349 209-615 JAENSK010000329.1 1545650-1546056 616-791 JAENSK010000329.1 1546276-1546451 792-927 JAENSK010000329.1 1546741-1546876 928-1166 JAENSK010000329.1 1548285-1548523 FEATURES Location/Qualifiers source 1..1166 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="21" /map="21" gene 1..1166 /gene="PEX10" /note="peroxisomal biogenesis factor 10" /db_xref="CGNC:834" /db_xref="GeneID:419396" exon 1..127 /gene="PEX10" /inference="alignment:Splign:2.1.0" CDS 16..999 /gene="PEX10" /EC_number="2.3.2.27" /codon_start=1 /product="peroxisome biogenesis factor 10" /protein_id="NP_001185583.1" /db_xref="CGNC:834" /db_xref="GeneID:419396" /translation="
MALGPAGPARLVRCGQKDELYRSGLRSGAGTALHGIAGAKKWLEWRREIELLSDVAYFALTTLSGYQTLGEEYVNIVQVDSTKKRVPSFLRRAIFVSLHTIVPYYLEKGLQHLEHELQIEDDGARTLQSNPALGLSSRTLIRNWIQKQVRELTEQQKKTILQVVYILKQSIPLLHRLHLAVFYIHGTFYHLSKRIAGIRYLHFGGLQGEDQSIRSSYKFLGIISLFHLLLTIGVQIYSFQQKQRARQEWKLHRNLALQKNTIKEGTTGRQSRCTLCLEERRHATATPCGHLFCWECITEWCNTRTECPLCREKFHPQKLIYLRHYQL"
misc_feature 67..744 /gene="PEX10" /note="Pex2 / Pex12 amino terminal region; Region: Pex2_Pex12; pfam04757" /db_xref="CDD:398431" misc_feature 826..981 /gene="PEX10" /note="RING finger, HC subclass, found in peroxin-10 (PEX10) and similar proteins; Region: RING-HC_PEX10; cd16527" /db_xref="CDD:438190" exon 128..208 /gene="PEX10" /inference="alignment:Splign:2.1.0" exon 209..615 /gene="PEX10" /inference="alignment:Splign:2.1.0" exon 616..791 /gene="PEX10" /inference="alignment:Splign:2.1.0" exon 792..927 /gene="PEX10" /inference="alignment:Splign:2.1.0" exon 928..1166 /gene="PEX10" /inference="alignment:Splign:2.1.0" ORIGIN
accctgcgccgcgccatggcgctgggccccgccgggccggctcggctggtgcgctgcgggcagaaggacgagctgtaccggagcggcctgcgcagcggggccggcaccgcgctgcacgggatcgcgggggctaagaagtggctggagtggaggagggagatcgagctgctctccgacgttgcctacttcgccctcaccaccctgtcaggttatcagactctgggtgaagaatatgtcaacattgttcaagttgactccaccaagaaaagggtaccttcttttcttcgacgggccatcttcgtttctctccataccatagtaccctattacttagaaaagggattgcagcatctggaacatgagttgcagatagaagatgatggggcaagaaccttgcaaagcaacccagcacttggcttatccagtaggaccttaatacgaaactggattcagaaacaagtcagggaacttacagaacaacagaagaaaacaatcctacaagttgtgtacatccttaaacagtccatccctttgcttcaccgactacatctggcagtgttctacatacatggcactttttatcacctatctaaaagaattgcaggaatcagatatctgcactttggaggactacaaggagaagatcagagcattcgatcaagttacaagttccttggaataatttcactcttccatcttcttctgacaattggtgttcagatatacagcttccaacaaaagcagagagcaaggcaggaatggaaactacaccgcaacctagctctccagaaaaatacgataaaggaaggaactactgggcgccagtcccgctgcactttgtgtttggaggaacggagacatgcaacagccacaccttgtgggcacctgttctgctgggaatgcatcaccgagtggtgtaacaccagaacagaatgtccactgtgcagagagaaatttcatcctcagaagctgatctacctacgccactatcaactgtaaggaaaaatcctgtctcattacaagggcctctgctctcataccttcatacagagtggtcatacagttcaggttagtccaagaacaagactttattgtaaaactggtaactgcctgtacaaggtggcacttcattcctgttttacaaaataaatctctttctgcctctt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]