2024-07-06 08:04:20, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_001039276 3579 bp mRNA linear VRT 17-FEB-2024 DEFINITION Gallus gallus argonaute 4, RISC catalytic component (AGO4), transcript variant 2, mRNA. ACCESSION NM_001039276 XM_417776 VERSION NM_001039276.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 3579) AUTHORS Burge,S., Kelly,E., Lonsdale,D., Mutowo-Muellenet,P., McAnulla,C., Mitchell,A., Sangrador-Vegas,A., Yong,S.Y., Mulder,N. and Hunter,S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3579) AUTHORS Caldwell,R.B., Kierzek,A.M., Arakawa,H., Bezzubov,Y., Zaim,J., Fiedler,P., Kutter,S., Blagodatski,A., Kostovska,D., Koter,M., Plachy,J., Carninci,P., Hayashizaki,Y. and Buerstedde,J.M. TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis JOURNAL Genome Biol 6 (1), R6 (2005) PUBMED 15642098 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000339.1. On Oct 18, 2021 this sequence version replaced NM_001039276.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: SRR13267659.315315.1, SRR13267654.245557.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA103992290, SAMEA103992323 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-170 JAENSK010000339.1 4255001-4255170 c 171-336 JAENSK010000339.1 4250705-4250870 c 337-457 JAENSK010000339.1 4250117-4250237 c 458-639 JAENSK010000339.1 4249749-4249930 c 640-776 JAENSK010000339.1 4249238-4249374 c 777-911 JAENSK010000339.1 4249020-4249154 c 912-999 JAENSK010000339.1 4248755-4248842 c 1000-1147 JAENSK010000339.1 4248226-4248373 c 1148-1267 JAENSK010000339.1 4248028-4248147 c 1268-1396 JAENSK010000339.1 4247677-4247805 c 1397-1530 JAENSK010000339.1 4247384-4247517 c 1531-1715 JAENSK010000339.1 4246792-4246976 c 1716-1875 JAENSK010000339.1 4246005-4246164 c 1876-2191 JAENSK010000339.1 4245244-4245559 c 2192-2326 JAENSK010000339.1 4244916-4245050 c 2327-2428 JAENSK010000339.1 4244014-4244115 c 2429-2628 JAENSK010000339.1 4243583-4243782 c 2629-3579 JAENSK010000339.1 4242534-4243484 c FEATURES Location/Qualifiers source 1..3579 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="23" /map="23" gene 1..3579 /gene="AGO4" /gene_synonym="EIF2C4" /note="argonaute 4, RISC catalytic component" /db_xref="CGNC:66346" /db_xref="GeneID:419629" exon 1..170 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 171..336 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 337..457 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" CDS 353..2737 /gene="AGO4" /gene_synonym="EIF2C4" /note="isoform 2 is encoded by transcript variant 2; protein argonaute-4; argonaute RISC catalytic component 4; eukaryotic translation initiation factor 2C, 4" /codon_start=1 /product="protein argonaute-4 isoform 2" /protein_id="NP_001034365.1" /db_xref="CGNC:66346" /db_xref="GeneID:419629" /translation="
MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSIQWVSVVSLQLLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 362..616 /gene="AGO4" /gene_synonym="EIF2C4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 647..799 /gene="AGO4" /gene_synonym="EIF2C4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 800..1162 /gene="AGO4" /gene_synonym="EIF2C4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(956..958,1001..1003,1043..1045,1055..1057, 1109..1111,1130..1132,1136..1138) /gene="AGO4" /gene_synonym="EIF2C4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1301..2608 /gene="AGO4" /gene_synonym="EIF2C4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1712..1714,1724..1726,1760..1771,1778..1780, 1802..1804,1811..1813,1823..1825,1835..1837) /gene="AGO4" /gene_synonym="EIF2C4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1916..1918,1922..1924,2162..2164,2576..2578) /gene="AGO4" /gene_synonym="EIF2C4" /note="active site" /db_xref="CDD:240015" misc_feature 2624..2689 /gene="AGO4" /gene_synonym="EIF2C4" /note="propagated from UniProtKB/Swiss-Prot (Q5ZMW0.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 458..639 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 640..776 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 777..911 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 912..999 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1000..1147 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1148..1267 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1268..1396 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1397..1530 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1531..1715 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1716..1875 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1876..2191 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 2192..2326 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 2327..2428 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 2429..2628 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 2629..3579 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" ORIGIN
cccggtcagggcggagcgaggcgcccggtgcgcgggcggcgcggagctgcgcgaggtacttcgggtcccctcagccggggcgcgtgagggggccccggtgctgggtttgcggaggccgcagccacaccataacccgaacccgcacggtgtgggatccggctcacgtatagggcccccagcaagccttttccagcccccccgtcgcccaggcctgggaactgttgggaaacccatccgcctcctagccaaccactttcaggttcagatccccaagattgatgtttatcactatgatgtggatatcaaaccagaaaaacgaccccgaagagtgaacagagaagtggtggatactatggtgagacacttcaagatgcagatatttggtgaccggcagcctggatacgatgggaagcggaacatgtacactgcacacccattacccattggcagggacagagtggatatggaggtgacacttccaggagaggggaaggaccagactttcaaagtgtccattcagtgggtgtcagttgtcagccttcagttgctgttggaagctctggcagggcatttgaatgaagttcctgaagattctgtacaagcacttgatgtaattacacggcaccttccgtccatgaggtatactcctgtgggtcgctcctttttttccccccctgaaggctattaccaccctctgggtggtggcagggaggtctggtttggtttccaccagtctgtcaggcctgccatgtggaacatgatgctcaacattgatgtatcagcaactgctttctatcgtgctcagcctatcattgagttcatgtgtgaggtcttggacattcagaacatcaatgaacaaaccaagcctctgacagactcccaacgtgtcaagtttaccaaagaaatcagaggtctaaaagtagaggttactcactgtggccagatgaagagaaagtatcgagtttgcaatgttactcgtcgaccagccagccatcagacgtttcctctgcagttggaaaatgggcaggctatggagtgtacagtagctcagtattttaagcagaagtacagtctgcagctaaaatatcctcatcttccctgtctccaagtaggacaggagcagaaacacacatacttaccgcttgaggtgtgtaacatagtggcaggccagaggtgtatcaagaagttaacagacaatcagacatcaactatgataaaagcgactgcaagatctgcacccgaccgacaggaagaaatcagcagacttgtgaaaagtaacagtatggttggtggacctgatccatatctgaaggagtttggtattgttgtccataatgaaatgacagagttgacaggcagagttttgccagcgccaatgctgcaatatggaggcaggaacaagactgtggccacaccaaaccaaggtgtgtgggacatgagagggaaacagttctatgctggcattgagattaaagtttgggctgttgcctgttttgctcctcaaaaacaatgcagggaagacttactaaagagttttacagaccagctgcgcaagatctccaaggacgcagggatgccgatccaaggccagccctgtttctgtaaatacgcccagggtgcagacagtgtggagcccatgttcaaacatttaaaactgacttatgttggtctgcagctgattgtggtgattctacctggaaagacacccgtgtatgctgaagtaaagcgagttggcgacactcttcttggcatggccactcagtgtgttcaggtaaagaatgtggtgaaaacctcaccacaaacactgtccaacctgtgtctgaaaataaatgcaaagcttggaggaatcaacaacgtgctcgtacctcatcaaaggccctcggtgttccagcagccagtgatctttttgggagcagatgtcactcaccctcctgctggggatggaaagaagccttccatagctgctgtggtcggcagcatggatggccatcctagccgttactgtgccacagtgcgagtgcagacctcccgtcaggagacctcccaggaactgctgtacagccaggaggtgatacaggacctgacaaacatggtgcgagaactgctgatacagttttacaaatccacacgtttcaagcctacaagaatcatttactacagaggaggagtatcagaagggcagatgaagcaggtagcttggccagaacttatagcaatcagaaaggcctgtattagtttggaagaagactacagaccaggaataacctacatcgttgtgcagaaaagacaccacaccaggctgttctgtgccgacaaaactgaaagggtgggtaagagtggcaacgtaccagcgggcactactgtggacagcacgatcacgcacccttctgaatttgacttttacctctgtagccacgcaggaattcagggaaccagccggccctcccactatcaggtcctgtgggatgacaactgtttcactgcagatgagctacagctgctgacctatcagctgtgtcacacgtatgtgcgctgtacgcgatcagtctctattccagcacctgcatactatgccagactggtagcatttagggctagataccatcttgtggacaaggatcacgacagtgctgaaggcagccacgtgtcaggacagagcaatggccgtgatcctcaggctctggcaaaggcagtgcagatccaccatgatactcaacatacaatgtattttgcttgagagcatctgggaagatgaggcaaagccaacaactcgttcagtcctgacatgttttcaatgcctactgctatagctagggcccggtttctttcagactgcccactaccagcagctctgaacagtcgcactgaatctgtacttcaaacaatgtctgatgcaccgacacaattgagccattcgtttcgttattttacgtcatagaaattcatagactgtcttttctgatgcattggactaaatttttacctcaaagcgcaaaaggccgatcatcccgacgtttttaaaggacttggcacgaaaggtttctattgaatactttgctagctctggtctttaggttcccttctcatcccattagctgatggtgacgactgattctccgtcctcacgcgctgcttagtgagtatgcgtagtatggcgaagttctcctccagttcaatgtaatcgttctcttgtgtggggccatagatttttttaatggagattttagacttcactactgtaaatgccttttaacagacgtaactttcacaggtcttgcagtttttgtcggttttactaatgacctttttaacctgcagactcgggctgcaaagcaattgcactattctgcgagttcagatcggtggttcctgttgtgaatgtgtgacgtgcccaggtggtggtgcctggcagtagctttcaattgtaacgcctacagataatgctgccatggcgtcgtgacaaacactgaaccatcgttttcccccctctaaaaaaacaaaacaaaaaaaaaaacgaaaaaaaaaaaaacaaaaaaaggatttaaaaaaaaaatagaaaaaaaaatacaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]