2024-06-29 20:43:43, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_001031560 1675 bp mRNA linear VRT 08-APR-2024 DEFINITION Gallus gallus N-acetylneuraminate pyruvate lyase (NPL), mRNA. ACCESSION NM_001031560 XM_426630 VERSION NM_001031560.3 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 1675) AUTHORS Tang,H., Finn,R.D. and Thomas,P.D. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 1675) AUTHORS Caldwell,R.B., Kierzek,A.M., Arakawa,H., Bezzubov,Y., Zaim,J., Fiedler,P., Kutter,S., Blagodatski,A., Kostovska,D., Koter,M., Plachy,J., Carninci,P., Hayashizaki,Y. and Buerstedde,J.M. TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis JOURNAL Genome Biol 6 (1), R6 (2005) PUBMED 15642098 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JAENSK010000237.1. On Sep 23, 2021 this sequence version replaced NM_001031560.2. ##Evidence-Data-START## Transcript exon combination :: HAEK01007295.1, AJ720150.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-52 JAENSK010000237.1 7432545-7432596 53-121 JAENSK010000237.1 7432822-7432890 122-195 JAENSK010000237.1 7434317-7434390 196-283 JAENSK010000237.1 7435491-7435578 284-341 JAENSK010000237.1 7436003-7436060 342-417 JAENSK010000237.1 7436152-7436227 418-510 JAENSK010000237.1 7436785-7436877 511-659 JAENSK010000237.1 7437682-7437830 660-706 JAENSK010000237.1 7438193-7438239 707-791 JAENSK010000237.1 7439025-7439109 792-831 JAENSK010000237.1 7440247-7440286 832-1675 JAENSK010000237.1 7441396-7442239 FEATURES Location/Qualifiers source 1..1675 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="8" /map="8" gene 1..1675 /gene="NPL" /note="N-acetylneuraminate pyruvate lyase" /db_xref="CGNC:3411" /db_xref="GeneID:429074" exon 1..52 /gene="NPL" /inference="alignment:Splign:2.1.0" exon 53..121 /gene="NPL" /inference="alignment:Splign:2.1.0" CDS 57..983 /gene="NPL" /EC_number="4.1.3.3" /note="NALase; sialate lyase; sialic acid lyase; sialic acid aldolase; sialate-pyruvate lyase; N-acetylneuraminic acid aldolase; N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)" /codon_start=1 /product="N-acetylneuraminate lyase" /protein_id="NP_001026731.2" /db_xref="CGNC:3411" /db_xref="GeneID:429074" /translation="
MTPRKKLEGLVAATVTPMTPDGRINLSVIHQYVDYLVSEQNVKNIFVNGTTGEGLSLSIQERKQLAEEWMCQGKDKLDHVIIHVGALSLLESQELARHAAAIGASGIAVIAPSFFKPTNKDELLGFLQKVASEAPTVPFYYYHIPAMTGVKIRVEELLDGIREQIPTFQGVKFSDTDLLDLAQCINKKEREQFVFLYGVDEQLLSALAIGANGAVGSTYNYLGRKTNLMLQAFAKPDLALARKYQFLTGEFLSFVIKLGFGVAQTKAVMTSVSGIPMGPPRLPLVGASEEFIAKAKAKLESIVWPDGD"
misc_feature 75..947 /gene="NPL" /note="A large family of domains similar to triose phosphate isomerase (TIM) which, in general, share an eight beta/alpha closed barrel structure; Region: TIM-like beta/alpha barrel domains; cl21457" /db_xref="CDD:473867" misc_feature 570..572 /gene="NPL" /note="catalytic residue [active]" /db_xref="CDD:188634" exon 122..195 /gene="NPL" /inference="alignment:Splign:2.1.0" exon 196..283 /gene="NPL" /inference="alignment:Splign:2.1.0" exon 284..341 /gene="NPL" /inference="alignment:Splign:2.1.0" exon 342..417 /gene="NPL" /inference="alignment:Splign:2.1.0" exon 418..510 /gene="NPL" /inference="alignment:Splign:2.1.0" exon 511..659 /gene="NPL" /inference="alignment:Splign:2.1.0" exon 660..706 /gene="NPL" /inference="alignment:Splign:2.1.0" exon 707..791 /gene="NPL" /inference="alignment:Splign:2.1.0" exon 792..831 /gene="NPL" /inference="alignment:Splign:2.1.0" exon 832..1675 /gene="NPL" /inference="alignment:Splign:2.1.0" ORIGIN
gccccacagccgctccggagccggcggggcgcttcgggcgcgggttgtggagctcgatgacacccagaaagaagctggagggtctggtcgctgccacagtcaccccgatgactcctgacggacgaatcaacctttcagtgattcaccagtatgtggattacctggtaagcgagcagaatgtgaagaacatctttgtgaatggcaccacaggagaaggcctgtcccttagcatccaggagaggaagcagttggctgaagaatggatgtgccaagggaaagacaagctggatcatgtgataattcacgtgggagctttaagtctattggagtcccaagaactggccagacatgcagcagccataggtgctagtggcattgcagtaatagctccctccttcttcaaacccacaaacaaagatgaactccttggtttcttacagaaagttgcatctgaagcccctacagttccattttattactaccacattccagctatgacgggtgtaaagattcgtgttgaggagttgctggatggaataagagagcagatccccaccttccagggtgtgaagttcagcgacacggacctcttggaccttgcacagtgcataaacaagaaggagagagaacagttcgtgtttctctatggggtagatgagcaactgttgagtgcactggcaataggggcaaatggagcagttggaagtacctacaactacttaggtaggaaaaccaacctgatgttgcaggcttttgcaaagccagaccttgcattagcacggaaataccagtttctcacgggggaatttctcagctttgtcatcaaactaggttttggtgttgcacagacaaaagctgtaatgacttccgtttctggcatccccatgggacctccacggcttccacttgttggtgcctctgaggaattcatcgccaaggccaaagccaagctggagagcattgtgtggcctgatggtgactgacttcactcccacgtcagtgtgcaggggctccttttctgggattcactgtctcttggcatgctcctcatgtaatgggctggtttggctgtgatctccttcaggaaaatgaaagtaatcggcgtggaagggctggcacacgtgtagccagccacctgttctttaacttcactctgctcctctggagctctgcactgcccagcactggctgctgtcattaaacaaacacacaaagacaaaacaaaactggtttgctccagcagagggatcctgaccttcttttgtctagaaaggaaggtctgcctgcgctgccccaaactggaggggaataaacttttgacaagggtagacagtgattggacaagggggaatggttttaagctcaaggagggaaggtttagattacatgtcggaggaagttcttcacggagagagtgatgaggtgctggaacagcctgcccagagaggctgtgaatgctccatccctggaggtggtcaggaccaggttggatgggcagcatctggtctggtaccagatctggaggttggtggacctgcctgtgtcagggggttggaatttggtgatccttgggggtcctttccagcccaagccattctgtgattctatgttttgtcctctccctgagcatcactagcactagggtgtcactgctgtaatacaacctgtctgctca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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