2024-09-29 09:43:52, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001031539 6405 bp mRNA linear VRT 04-FEB-2024 DEFINITION Gallus gallus ELOVL fatty acid elongase 6 (ELOVL6), mRNA. ACCESSION NM_001031539 XM_426328 VERSION NM_001031539.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 6405) AUTHORS Zhang,D.D., Wang,D.D., Wang,Z., Wang,Y.B., Li,G.X., Sun,G.R., Tian,Y.D., Han,R.L., Li,Z.J., Jiang,R.R., Liu,X.J., Kang,X.T. and Li,H. TITLE Estrogen Abolishes the Repression Role of gga-miR-221-5p Targeting ELOVL6 and SQLE to Promote Lipid Synthesis in Chicken Liver JOURNAL Int J Mol Sci 21 (5), 1624 (2020) PUBMED 32120850 REMARK GeneRIF: Estrogen Abolishes the Repression Role of gga-miR-221-5p Targeting ELOVL6 and SQLE to Promote Lipid Synthesis in Chicken Liver. Publication Status: Online-Only REFERENCE 2 (bases 1 to 6405) AUTHORS Tang,H., Finn,R.D. and Thomas,P.D. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 3 (bases 1 to 6405) AUTHORS Burge,S., Kelly,E., Lonsdale,D., Mutowo-Muellenet,P., McAnulla,C., Mitchell,A., Sangrador-Vegas,A., Yong,S.Y., Mulder,N. and Hunter,S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 6405) AUTHORS Caldwell,R.B., Kierzek,A.M., Arakawa,H., Bezzubov,Y., Zaim,J., Fiedler,P., Kutter,S., Blagodatski,A., Kostovska,D., Koter,M., Plachy,J., Carninci,P., Hayashizaki,Y. and Buerstedde,J.M. TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis JOURNAL Genome Biol 6 (1), R6 (2005) PUBMED 15642098 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000074.1. On Nov 5, 2021 this sequence version replaced NM_001031539.1. ##Evidence-Data-START## Transcript exon combination :: AJ720366.1, SRR13267649.176987.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-237 JAENSK010000074.1 10474663-10474899 238-369 JAENSK010000074.1 10518516-10518647 370-521 JAENSK010000074.1 10535715-10535866 522-6405 JAENSK010000074.1 10538630-10544513 FEATURES Location/Qualifiers source 1..6405 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="4" /map="4" gene 1..6405 /gene="ELOVL6" /note="ELOVL fatty acid elongase 6" /db_xref="CGNC:53457" /db_xref="GeneID:428772" exon 1..237 /gene="ELOVL6" /inference="alignment:Splign:2.1.0" misc_feature 35..37 /gene="ELOVL6" /note="upstream in-frame stop codon" CDS 149..946 /gene="ELOVL6" /EC_number="2.3.1.199" /note="elongation of very long chain fatty acids protein 6; elongation of very long chain fatty acids family member protein 6; 3-keto acyl-CoA synthase ELOVL6; ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast); ELOVL FA elongase 6; very long chain 3-oxoacyl-CoA synthase 6; very long chain 3-ketoacyl-CoA synthase 6" /codon_start=1 /product="very long chain fatty acid elongase 6" /protein_id="NP_001026710.1" /db_xref="CGNC:53457" /db_xref="GeneID:428772" /translation="
MNMSVLTLQEYEFEKQFNEHEAIQWMQENWKKSFLFSALYAAFIFGGRHLMNKRAKFELRKPLVLWSLSLAVFSIFGAVRTAPYMLYILMTKGLKQSVCDQSFYIGPVSKFWAYAFVLSKAPELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHAVMYSYYALRAAGFRVSRKFAMFITLSQITQMLVGCVINYLVFSWMQHGQCHSHVQNIIWSSLMYLSYFVLFCHFFFEAYIGKTTKARKVD"
misc_feature 152..154 /gene="ELOVL6" /note="N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255|HAMAP-Rule:MF_03206; propagated from UniProtKB/Swiss-Prot (Q5ZJR8.1); glycosylation site" misc_feature 221..931 /gene="ELOVL6" /note="GNS1/SUR4 family; Region: ELO; pfam01151" /db_xref="CDD:460083" misc_feature 248..301 /gene="ELOVL6" /note="propagated from UniProtKB/Swiss-Prot (Q5ZJR8.1); transmembrane region" misc_feature 356..418 /gene="ELOVL6" /note="propagated from UniProtKB/Swiss-Prot (Q5ZJR8.1); transmembrane region" misc_feature 479..541 /gene="ELOVL6" /note="propagated from UniProtKB/Swiss-Prot (Q5ZJR8.1); transmembrane region" misc_feature 557..616 /gene="ELOVL6" /note="propagated from UniProtKB/Swiss-Prot (Q5ZJR8.1); transmembrane region" misc_feature 623..685 /gene="ELOVL6" /note="propagated from UniProtKB/Swiss-Prot (Q5ZJR8.1); transmembrane region" misc_feature 737..799 /gene="ELOVL6" /note="propagated from UniProtKB/Swiss-Prot (Q5ZJR8.1); transmembrane region" misc_feature 842..904 /gene="ELOVL6" /note="propagated from UniProtKB/Swiss-Prot (Q5ZJR8.1); transmembrane region" exon 238..369 /gene="ELOVL6" /inference="alignment:Splign:2.1.0" exon 370..521 /gene="ELOVL6" /inference="alignment:Splign:2.1.0" exon 522..6405 /gene="ELOVL6" /inference="alignment:Splign:2.1.0" ORIGIN
gggaggagaggcgcggaggggagcggagctatgctaaacctggggtaccgctgaggcggggcagccaggccggaggcgggagctctccggctcccgaggcggcaggcggcatttcggcgcggggagcggctccgcagccaccgggccaatgaacatgtccgtgttgactttgcaggaatacgaattcgagaagcagttcaacgagcatgaggccatccagtggatgcaggagaactggaagaaatcttttctattttcagcactgtacgctgccttcatatttggtggtcggcacctaatgaataaacgagcaaaatttgaactgaggaaaccactagtgctctggtccctgagccttgctgtcttcagtatattcggtgctgttcgaactgctccttacatgctgtacattttgatgaccaaaggcctgaagcagtcagtgtgtgaccagagtttttacattggacctgtcagcaaattctgggcatatgcatttgtgctaagcaaagcacctgaactaggagatacaatattcattattcttaggaaacagaagctcatcttcttacactggtaccaccacattactgtgttactttattcttggtattcctacaaggacatggtggctggcggtggctggtttatgaccatgaactatggagtgcacgccgttatgtactcttactatgccttgcgggctgctggcttcagagtctcacgcaagtttgccatgttcatcaccttgtcgcagatcacccagatgttggtcggctgtgtaatcaactatctggtcttctcctggatgcagcatggccagtgccattcccacgtgcagaatatcatctggtcctctctcatgtacctcagctactttgtgctcttctgccattttttctttgaggcctatatcggcaaaaccacaaaagcaaggaaggttgactagtggtaagaatgagacagaagccatagctcagggtcatcaagaaaaacaaaactacaagaaaagaaaatggcacaaggaaacacatatatgtatggtgcagctaaaacttggcagcttagggaaagttagcttggtttaacccagtaagtttatgatcctatcatggtgaggactcactgaaatctactctaactcaaaggactgctgacaaaagactccttccttcttgtacctgcctgctccagaaaagaaaggagaaaaggagaaacagaaaaaaagtgagaagaaaagagaagaaaagcagaaaggaataatattgagaggaaaaaatatagtacattaaataaactgtgtttccctgggatggaaaaaaaatttattgtgaaaaaaagtttctaaattctttctaatagtttttcagcattaaagttgaacaagacattgacattaatggtaggattgtgaaattaaaatcttttctgtaaaaggtttataccttcagccagaatgaaatccaagaggatgtcacgtacacctatgcggaaagcggttgaactccattgtggtcatgaatggcagcaagaagagattgagtgctctgttctgtcctgtgccaagggagtagagctgggaggcaggcacctctctggagtgcaggaaggagcaggacttgtacaagagcctaacatgaaaacaagtgctgttgcaatacatatctcagcaagtgcattttccaagtgcgcttttcagctaaaggcaaggagtttctgcagcaggataagacatagagggttaaatcaactgatatttgctaaattaccaggggctaatagcagatgaatgttcaggaaggagagggaggcaactactgaaacgtgatttttaagaattatccattaatctcaaattaacccacagcaacacggaatggaatgaggggaaatgagaagccactcttgccagcgagcggcccctcttcccattgattcccaagccgtgcgtcaggtggacctgggaggcaaggcaaggggaagaggcgcaggaccaggcagcgctgggtggctctgtgcctctgcacgcacctgccaggctgggcgaagatgtgccaagagccctcccctggtcacatggagatactactgcaaaacatgcccggaataagattttcttggcatcggtataggaaatcagtctgagcggagtgattttgctgcaatggcttagctctaatgtccagagagaattgttcttcattaaacgtgtatctctctctctgcagagtctgtactgtaacatcagactgaccactaaagaagacgctcttcttctccacagtcggctacagaaataaggagaaacgtatttcactctgaaccttagagagctagttgataacagccatattctctcaaagacggatagattgcattatctgtgatattccagtccttacaaagccaaataaaatgtgtaaaagttcctagtatttcaaagacgcaagtatgtaaacttgatgttaaatgtgttaatgtagtactctaaattgtatcagttaggtagcttaactaaacaattagaagaactagatcaacaaaataggggctgctgttctgcgtagaatacacacacctataactacacccatatacacgttctgtgaattgtcagcaagaaaaaagcccagcggcagagaatcacatttcctggctaacgcaaaagattgtcattatctttcttgttttaatttgagattgtacagtgcaaagggtttggttttttttttaattacgatttttagctttaattgtgctgtcattcatgaaacagagctgctttagtatcctgttaagagatgacaagggcttttggtgtctcattatatacaaaagaaaaacaaataaagttacattccatgttatgtgaatggtcttacaaatcaaaaagcctccgtaggccgaaatcataattataacaagcagaaaagatgtttacatttgtgttatttaagttattgatgtgctgacgttattttatggtacacaacaaacagcaaaatgtgatatccagtaatgaagctatgatattcattaataggactactgtatacatggaaacaataggcaaaaccaattaaatgtgtaaaccatcttgttttacagcttgggagtagataactgtaatgctgagtaagcctttatcctcacgcttaattttgccctggctaagaaccaggttatgaagactgagtaacagggaaaacccaaatttcaagttccctaccccgcagatgggaagtgttggtagaagccccatcgtgccacgcaaggagctgcacgcaacccctggtagctggaagattgcaggtaaaggctaaaaagcccaagaagctttacaagtaggaagtgatactgcagctaggtgaagacctgtggcccaagttttacacagacagaaaacagagcgggttgctaacaagtgtgcaaacaacccactgtgttttgtacactgtgttccttaattgcatgaggggaaaaaaaaaaaaaagaaagaaaaaaaagcattgtgtgtgtgccagatggagatgctggcaatgccaacactgagttgagcagagcaggcattttacccgttccctgaaagtcctcacaggtgctgtttgctcccaacctgcctgcatccctgtgagcactcacgttagacctggaggtgtccccacacatcccaaggatcaggttcctcctctgctgcctggtcagtagctccagagcaagggctgacctacaggcctcctccagatgcagtataggtgtgccccacgtgtgcagggaaaagtgggggcgtccagtgggaggataggtttgcgggcgagtatgtgtatagggaagggacagcaagatcagacacgtaaggaacaaatgaggatacctctgccatcagaagttggaactgccatgtcacagaggcatttctacaggtcctatggccatagggcttctcctctgagatttttcactggaggcaagtgtggcaactaacattaaagaagttgaggataagaccaaagtcaacatacgctgtttttcttttttggttgttttgttttgtttttccctttaaaaagtgcatacttgatagttagacatcacttttaacccatacacctaaacagcaaggcagtcatccctaagctaatgacacctctaatattctagctgttccaacccaaacacagctaattgggtcctacttatttcccctgatttaagccttggggccacacttgcacactattctgtcactaccagaaccctttttttttggcaataacttttaagtaaagttgcagttctgccatattcacacataccttgggggactccagcttgcagagtgcgccaaacattatgggactgtgacagtgaccacaatgctgtcaggggattcactgctgaagtcaggcaagttacactgatgataaggtcagtctgccagggccgaggtctgtgcttgatgtctgacacatttatccagtgtactgaaataaaaacagtagggttgtgcaggtttacctgtaagcaaccgtgagcaggatttggtaggaaaacatcaagaagccggctaagagcaaagttccttcaagctatgcctgtgaggagaaggaaagccctcatgctgacaagccttctgtaagtcagtcacagatgatgtgcatctcagctcactggtaacatgtaagtggctgcttcccaaagacatctttcagcacaatttcaaaggaaactaataaaagcattatcttaccataagggtttaagcatgcgaaaggaatcagtcaaagaggtccagctgaacagcagggataaataaagcctgttttgtaggggagcacaaactgcaggcgaggtggcagcggagaccagtcggtgccttggtagggaggaagcttcgaggacagggctgaaccactgctggactgactcgtgcccagtggcctgcttgccatgagggtgggccgtgatggaaggaggctgcagccaaagacctgcggtctgctggtctgtgctttaacagccggcccactgctgggcacgtcgtttctttatcctagaaagaaaaacgtaggagaatggattaactgagagcaacgacacctaggggatcaatatcaggttttcaggtaacagccagtgaaaggcgccaattaccgtggccatgacacagcagcctttgtaagcatgtgccataacgtctccagtatttgcattctgtctctgtacttcagaaccagaaaaagagctattgatacacaagccgtaaatgcagaaccacttttaagtaacaaaagtggcactggttgaggaagaaagctcagcagagtgcggtttgtgccacataagctcagcacacggctgaatacctgcagaaaatgagattgctagtcaggtgcctggagatgtgcaccagctttgcttcagtcgattgcagtgtggttggttcagagggcagtgacacaaactgccaaggccctggcgttagtcctcagtcctatttcccagccccacctcaatgagccttctaaaagagaagaaatacagctcagcactctcagcgtgtttctactcttttatttcaatacattttcatggaatcccacagaatggcaggggttggaagggacctctagcgaccgttgagtccaacccccctgataaagcaggtaaaatatagcagaggatggttgcccatcccatttattttattaaaaaacaagctacaagatgagtccctgatcctgctattacaaatgctccattgtggtcagtgtacacgggcacagaaaccctttgcttacaggggcaaggacaggatcagtgccttgttaaagacttactctctagcagagcaacaaccacacacagactagaattaatttgatttcttaaacacatataaggtgagatctgcacaagagccctacaccgaagggagaccagggacctcccagtgcaccataaagctcaataaaatgctgcatggagtggggtcagagggtatttcccaatgggtatgaaatgatattcccctgaaatagtgaccttcctgagaagtctcacgtctgtccggccctggacagcttcagacagggctgactgctggaaaaacacagctctgattgacttatctgctttctctaaagagccactacatgctttaggctttgaggagccttaaagctcgagctagatttctattcagaaaaaagaaaaaaaaagaaaaaaaaaacaagggaaaataatacatgtacaatagctacgagagaatagtatgagaaatacctttattttaccattttcaaatggctatttcactacataaaaggaagtttttatttttattttttttttcttttggtatattgatattccaaataaaattttaacttttggttcaaaagaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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