2024-06-29 21:48:34, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_001031474 6355 bp mRNA linear VRT 17-FEB-2024 DEFINITION Gallus gallus UBA domain containing 1 (UBAC1), mRNA. ACCESSION NM_001031474 XM_425327 VERSION NM_001031474.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 6355) AUTHORS Burge,S., Kelly,E., Lonsdale,D., Mutowo-Muellenet,P., McAnulla,C., Mitchell,A., Sangrador-Vegas,A., Yong,S.Y., Mulder,N. and Hunter,S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 6355) AUTHORS Caldwell,R.B., Kierzek,A.M., Arakawa,H., Bezzubov,Y., Zaim,J., Fiedler,P., Kutter,S., Blagodatski,A., Kostovska,D., Koter,M., Plachy,J., Carninci,P., Hayashizaki,Y. and Buerstedde,J.M. TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis JOURNAL Genome Biol 6 (1), R6 (2005) PUBMED 15642098 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JAENSK010000308.1. On Sep 23, 2021 this sequence version replaced NM_001031474.1. ##Evidence-Data-START## Transcript exon combination :: AJ720445.1, SRR13267662.11143.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-306 JAENSK010000308.1 7942809-7943114 307-427 JAENSK010000308.1 7948701-7948821 428-501 JAENSK010000308.1 7950292-7950365 502-609 JAENSK010000308.1 7951625-7951732 610-712 JAENSK010000308.1 7952245-7952347 713-821 JAENSK010000308.1 7953037-7953145 822-1053 JAENSK010000308.1 7954460-7954691 1054-1140 JAENSK010000308.1 7955784-7955870 1141-1279 JAENSK010000308.1 7956011-7956149 1280-6355 JAENSK010000308.1 7958409-7963484 FEATURES Location/Qualifiers source 1..6355 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="17" /map="17" gene 1..6355 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /note="UBA domain containing 1" /db_xref="CGNC:1198" /db_xref="GeneID:427754" exon 1..306 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /inference="alignment:Splign:2.1.0" misc_feature 103..105 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /note="upstream in-frame stop codon" CDS 169..1395 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /note="UBA domain-containing protein 1; E3 ubiquitin-protein ligase subunit KPC2; kip1 ubiquitination-promoting complex protein 2; ubiquitin associated domain containing 1" /codon_start=1 /product="ubiquitin-associated domain-containing protein 1" /protein_id="NP_001026645.1" /db_xref="CGNC:1198" /db_xref="GeneID:427754" /translation="
MFVQEEKIFAGKVLRLQVCTMEGAEWLEEVPEDTTVEKLKERCLKHCVPGSLEDPKTVTHHKLIHATSEKVLTDSKTVLEENIQDRDVLLLIKKRAPPPLPKMADVSAEEKRKQEQKAPDKDAILKATANLPSRNVDRTVAQHNMRDFQTELRKILVSLIEVAQKLLALNPDAVELFKKANAMLDEDEEDRVDEIALRQLTEMGFPESRAVKALRLNHMSVTQAMEWLIEHADDPAVDAPLPGQTPSEAAAEAGASSAEATAGPSSEAGGEEAKDELTEIFKKIRRKREFRPDPRAVIALMEMGFDEKEVVDALRVNNNQQNAACEWLLGDRKPSPEDLDKGIDTNSPLFQAILENPVVQLGLTNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRIFQTLNRT"
misc_feature 193..453 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /note="ubiquitin-like (Ubl) domain found in Kip1 ubiquitination-promoting complex protein 2 (KPC2) and similar proteins; Region: Ubl_KPC2; cd17066" /db_xref="CDD:340586" misc_feature 466..525 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /note="propagated from UniProtKB/Swiss-Prot (Q5ZJI9.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 751..864 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /note="UBA1 domain found in Kip1 ubiquitination-promoting complex protein 2 (KPC2) and similar proteins; Region: UBA1_KPC2; cd14303" /db_xref="CDD:270488" misc_feature 871..993 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /note="propagated from UniProtKB/Swiss-Prot (Q5ZJI9.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 1042..1158 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /note="UBA2 domain found in Kip1 ubiquitination-promoting complex protein 2 (KPC2) and similar proteins; Region: UBA2_KPC2; cd14304" /db_xref="CDD:270489" misc_feature 1234..1353 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /note="Heat shock chaperonin-binding motif; Region: STI1; smart00727" /db_xref="CDD:128966" exon 307..427 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /inference="alignment:Splign:2.1.0" exon 428..501 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /inference="alignment:Splign:2.1.0" exon 502..609 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /inference="alignment:Splign:2.1.0" exon 610..712 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /inference="alignment:Splign:2.1.0" exon 713..821 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /inference="alignment:Splign:2.1.0" exon 822..1053 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /inference="alignment:Splign:2.1.0" exon 1054..1140 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /inference="alignment:Splign:2.1.0" exon 1141..1279 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /inference="alignment:Splign:2.1.0" exon 1280..6355 /gene="UBAC1" /gene_synonym="KPC2; UBADC1" /inference="alignment:Splign:2.1.0" ORIGIN
gtcccctcagcgcagcgccgggcccagccgtgccggcgacgcggggtcctcgcagctcccccgggctctcggcctcccggggtcaccttcatgggccggcggtagcgcggcggggcccggggccgtgctgaggcgtcggcggggcggggaggagcggggccggcggcgatgttcgtgcaggaggagaagatcttcgcggggaaggtgctgcggctgcaggtgtgcaccatggagggcgccgagtggctggaggaggtccccgaggacaccacggtggagaagctgaaggagcgctgcctgaagcactgtgtacctgggagcttggaggatccaaagactgtgacacatcataagttgatacatgctacttctgagaaggtgctaacagactcaaaaacagtgttggaggaaaacattcaagacagagatgtcttgctcttaataaagaagcgtgcaccacctccactccccaaaatggcagatgtgtccgcagaggagaaaaggaaacaagagcagaaagctcctgataaggatgctattctcaaagcaactgcaaatctgccctctcgcaacgtagatcgcactgtggcccagcacaacatgagggatttccagacagagctccggaagatcttagtttccctcattgaagttgcacagaaattgctagcactgaacccagatgcagttgaactatttaagaaggcaaacgccatgctggatgaggatgaggaagacagagtggatgagatagctctgcggcaacttacagaaatggggtttccagagagcagagctgtcaaagcccttcgattaaatcatatgtcagtgacacaggccatggagtggttgatagaacatgcagatgaccctgcagtggatgctccactgccaggtcagactccatccgaagctgcagctgaagctggtgcatcctctgctgaagcaactgcaggtccaagttcagaagcaggtggggaagaagccaaagatgagctgactgaaatatttaagaagatacgaaggaaaagagagtttcgcccagacccacgggctgtcatcgccctaatggagatgggatttgatgaaaaagaagtggtagatgcactcagagtaaacaacaaccagcaaaatgcagcttgtgaatggctgctgggagacagaaagccttctccagaggacttagataagggaattgacacaaacagccctctcttccaagccatcttagaaaacccagtagtacagttagggttaaccaaccctaaaactctactagccttcgaagatatgcttgaaaaccccttgaacagcactcagtggatgaatgatccagaaactgggcctgtcatgctacagatctctcgaatcttccagacactgaatcgcacatagaggggaatgccagaccactgtgccacttcctgctgtcccttgtgtcaccttctcaatggggagggtgcatggattgtttggggaggggggagggatgctgtctgagtaggggtctcatgtgagagcttatgtagttatggccaactgaagttaattgccttgtgaatttagtgttagtggaagaggtttgaagacttgtatatgttttcaggtgttaggttaaaaataaagtatatcaaaaataggaaaaggttttgtgaaaacaattaagaatctgcttgtcagaaagaaatatgatattgcttgataaaaaaaaaaggcctgtgacagtagttttctagccagttttactagcatctggctagtgtttacaaaaggtcactgaccactagcataggatattaatcatctccatgcagtattaatttatggctatatcaaattataaaatgcttttaaaaattgattcttaggaaatattttttaaaagtccaaatattgggagagcaagcacatttctatccagacttgttcgtcttgcattatgattcaaacagaataattcgtagatggaattcatttaataaatagcattactttttcctatttattttctgcgttagtgttcttccagtccaatggtaggtacacttctcagagattgtcagctatgttaaagatgcagtatctctttcatggcaggacttgttacaccaacacttggattctccagtaggctgcagttcctaagtttatcctatgccatatcttagtgcaaggaggatatcttcaaatggtgtttgtttttccatatttatgtgcacggttttgcagaggggaacttgtgttgttgactgtttcaaactgtttacaaaaaagcaattcatttgcatgggttttccccaaatggtgacctgcaaagaagcagaaacactttgggttttttattttttttaacatattcaaaagcacgctcagaattaattactttggatagaagtggttatccttgaagcttttactttggaaataccaaggaagtcaggctatgtcactcctagttttgttggaagactgactggagatttcagacaggtgccgtgagcttttaagaaaagaactggtgaatgttcagcttctttcttgtgattgggccatgcaggcttttgttttcaaggcagtgaaacacagctgacatctgtcacaatccctgctgcaccttgtgtttcgtagccttttttctgtttgaaaggtgtctgtcagatagatcccaaatagctctgccaagttcctttctaagtgtatgttttacacagttgtgtttttgtttcaaaaaggaaaatgctacaagatgcaacctgaaaccctatgacaagttttagcctgaacttggcacctcgtctgtgctattgtgcagtcgaggcactgaagttgccaatttctcataattaatacgaagggtggggaaacaaaacagcatgagattttatcttgacttactatcccaggatttttttttaatttgttatctgtagtttcatgttaagttttacagttcacagctgctgaaatatttacttttgtgtttagaaattccagggtttatagaggtgtttgttcggattggttgttccaacacccagctgctcctgggactgcctgctgccactggcaaggcagtgtgggtgatgaatttgagcaggctctccagttttcacgtggttgaagctgaatgctgtctgacctccttcacaggagcagagtggctcctcctaagcatgaagattctgctacttgtgtgtttctgcagtgtggtattggcaggatctgctactgaacttgttctctctgcgtcggattggtaagagcggtaaaagttatcagagttgcctcccttggaatgccagaacagagtcagggccactgctggcttataaggaaaaatagtatgagtaaaacaaggcatgcatgtgtaatagatgaagataaggatgctgaggttcaacaacataacctagtgatgtagcagcaattaaaaactgtacagataaaggaatactgcatctttaaaacgcatgaaggcttgagaatatgtggttgtttctggctttgcttatttcagagctcaaagcttatgtagctgaagtgtcggagagattaaggttccagtggccagtctctgaaagaggccagaacgtaggaggtgtgatgtttgcagcaaggctaaagagttgaactaaatgaaaccaaaactgcccttaaggttgaacaaaccctttgaggagctgatcaagacaccagtattgttctgtgggtatgaatcagcagcagacttacggagctgtgtgtccctgtgacacctgggtgtattgttgcttgattagttaccagtgggaggatggatgctaagttcgttatgcttgcagaagcgttgatttatcccaatctttacaaaacctgcaaaaatcttgaatgatcactgcttttagtcagaacatgtgtaggcaggtctccaggccagaggagtctgtgttaagagtgcttcctgggcacaaaccttcctgttccatggctaaaggttaaaaggctgatggatctgctctgtaagcaagtgagaggtccataagcatattggaatataagtttttcttttaataaataagttaattttgtgaagaactactcctgggagtaagggtttacaagttcaggtcctatgcttgcatctctggtgttcacgttgtaactagtaaagatatgccatgtgtaagtgtctcataacatggccaaaggagcgttggaagcctgtgaaatcaagaagtaaggaaatgaaacagtaggtggttcttacaatgcagtgtctattccttacaactcttctagctctttgccctatccattgatcaagacaatcttctgtcttttgatattacgtgactttgaaagctagctagctatttatttaaatatatataatttatgatttttgtcatcaaaacactgatatttttaatagaaatgtactatatggaagtttgttctcagggctttgtgtttatactcaacggggggtgcacttaaagggatgtatttggaagaaattccagtggccactttgcagcttggaccttggttagttgtgacctatgagactgagatagcttaatgctcctgttaaacctctaggtgcaatccaaagaaaatgccattcttttctctccgtgtgagcagtggcatgagtcttcctttcagattgctgcgtcactgtatggaaatggccacaccagattatccatccctttcacagtttgatctttaccaccatttcagggacacctctgttctccatgcagctggaaaataatcttgcactgtttccaaagcagtcatcactgcactcgtgctcttctgggaaagtgcaaggttcgctcctgcaagagctctgaaagctgcagctaattgcttggtttgggctgtcccagatgtgtcccagaaccctgacccccattgctctcctcgctctcctggaaccaacttgtctttcagagattgatgttcatatccaagatacttgggtgcttatggaaatcctttgtagttgagactgttagtttgtttgacattgcgattcacagctgaggacctcgaatatgttctgcaagcattgcaccaaacgaatgtactgtaacactgtcagcaaatgttgcctgtagcggagatatggaggttcccagtgacttcagcagcagttttcttgaaatacagtgagtgtttcatccaaagttatcccccgtttttctactttcagtaagtagcatttttattaactggcagaatagcagcacttggagctgggtctttccatccagttgtaagtcattatgctttaaggcataagcagaccactgactgtgccctctcctctgggacaattgttttgctgtcagaattaggacagtcagtgaacttggccaggagggcggccccagtgctcctgcagaggaaagagcaagcagtgtacattgtgtctatgtgaacgtgtcctcatggcggttgttctcacttgcatcctgatatccaggtacaacaacagggggtttaagggcctctttccctagatttaaagatcttcaatgcagatcctgtttgcagcatgtgaacttcaataaatatagatgcattgaattctttctgaatttaggtatggttttatatcatgttctggggagagggaagaaattgaatcatgttttaaacggagccccacaaaacgaagtgtctttgcagtgggtaacagaggcctgtagagatctttaatttgcagatttttattgtaatttaacaacctgtacaagaatgtgatttgccattcagcacttaccacagagtagcaccagtaaaactatactgcgaggtactgacttcagcgtttttcatttcacctgtgtatgaaatcatgaggtatggcatatgataatttttatatgaagctgacactggtgtgtggcatgcacagctgtttctaagatgtaacattacttttatgaagcttaactagggcggacatcactgagcctgtggaattcagggttcattctggacacgctgatgtgggtcactgacttctccctggctggggagcccagcagcaggctttgcttcaatacagagcccttcaggcagcaagtaagaagtgctactgacttgtttttcttctaaacatttgctgttgtctattgaaatattttcctagaggttattgaggtcattagctaagccagacctgttcagattggaacagttatgtacctttagcatgtggagaagtcatacccatgagcaagactagaatgaatgctgagtctttaagcctgctcacacatacacactaaagacactgatgttatgtgtgctgtaaatttatattataacttaaaaataaaggttttttgatttatta
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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